Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq59048 257 4e-66 >seq59048 Length=3006 Score = 257 bits (284), Expect = 4e-66 Identities = 307/415 (74%), Gaps = 24/415 (6%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| ||||||||| ||| ||| ||| || |||| ||||||||| ||||||| Sbjct 1382 CTTTACAACCCTAAGGCCTTCGTCACCCACTCGGTATTGCTGGATCAGGCTTTCGCCCAT 1323 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 1322 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 1263 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| |||||| | || ||| ||||||||||| || Sbjct 1262 TGGCTGATCATCCTCTCAGACCAGCTACAGATCGTTGGCTTGGTAGGCCATTACCCTACC 1203 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 ||||| |||||| | ||| |||||| || || | || ||||| Sbjct 1202 AACTACCTAATCTGACGCGGGCTCATCCATCAGCGATA------AA--------TCTTTC 1157 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 || || ||| |||||||||| |||| | ||||| || | || Sbjct 1156 CTCCGAAGAGAATATACGGTATTAGCATTTATTTCTAAATGTTATTCCGTACTGATGGGT 1097 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 || |||||| ||||||||||||| |||||| | || ||||||| ||| Sbjct 1096 AGATTCCCACGTGTTACTCACCCGTCTGCCACTAACTAATTTAG-AGCAAGC-----CCT 1043 Query 364 --GTTA--CCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| ||||||||||||||||||||| || | ||| ||||||| |||||| Sbjct 1042 AAATTAGCCCGTTCGACTTGCATGTGTTAAGCATACCGAAAGCGTTCGTTCTGAG 988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1218532350848