Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3635 147 4e-33 seq6494 118 2e-24 seq50297 111 3e-22 seq6823 95.1 2e-17 seq17928 86.0 1e-14 seq25503 80.6 5e-13 >seq3635 Length=37909 Score = 147 bits (162), Expect = 4e-33 Identities = 208/285 (73%), Gaps = 8/285 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97 |||||||||| ||||| ||| | || || ||||||||||| ||||| ||||| Sbjct 37384 ATGCCCTTCAAAAGGTGTCTATGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 37325 Query 98 TCAAAGCAGGCCTTTG---CTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||| |||||| || | ||| | || |||||||||||| ||||||||| | ||| Sbjct 37324 TCAAACCAGGCCGATGTCGCCTGAAAAGTTTTGCATGGAATAATGGAATAGGACTT-CGG 37266 Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||| |||||||| | ||| ||| |||||||| || || || || ||||| || Sbjct 37265 TTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACAGGCGGGGACGTT 37207 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| | ||||||||||||| |||| |||| ||||| |||||||| Sbjct 37206 TGTATGGTTGCGCTAGAGGTGAAATTCATGGACCGTAACCAGACAAACTAAAGCGAAAGC 37147 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| |||| ||||||||||| || ||| ||||||| || || Sbjct 37146 ATTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAGAGG 37103 >seq6494 Length=25048 Score = 118 bits (130), Expect = 2e-24 Identities = 184/254 (72%), Gaps = 12/254 (5%) Strand=Plus/Plus Query 68 AGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACAT 124 || || |||||||| || ||||| ||||| ||||| |||||| || | ||| | Sbjct 24254 AGCACGTTTACTTTTAACAAATTTGAGTGCTCAAACCAGGCCGATGTTACCTGAAACGTT 24313 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 | |||| ||||||| ||||||||| | |||||||||||||||||||| | | ||| || Sbjct 24314 TTGCATAGAATAATTGAATAGGACTT-CGGTTCTATTTTGTTGGTTT-TTGATCCGAAGT 24371 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTG--TCAGAGGTGAAATTC-T 241 |||||| || || || || ||||| || | || |||| ||||||||||||| | Sbjct 24372 AATGATCAAGAGAGACAGGCGGGGACGTTTGCAT--GATTGCACTAGAGGTGAAATTCAT 24429 Query 242 TGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 || || |||| |||| ||| |||| ||| |||| ||||||||||| || Sbjct 24430 AGGCCATA-ACCAGACAGACTAAAGCGTAAGCATTCTTCAAGCATGTTTTCATTGGCCA- 24487 Query 302 TGAACGAAAGTTAG 315 ||| ||||||| || Sbjct 24488 TGAGCGAAAGTCAG 24501 >seq50297 Length=604 Score = 111 bits (122), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAA-ATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTA 126 || |||||||||||||| ||| | ||| ||||| |||||| || | ||| || Sbjct 59 ACGTTTACTTTGAAAAACATTTGGGTGCTCAAACCAGGCCGATGTTGACTGAAACGTTTT 118 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186 |||||||||||| ||||||||| | ||||||| || ||| |||| | | ||| |||| Sbjct 119 GCATGGAATAATGGAATAGGACTTA-GGTTCTACTTCGTTTGTTTTTGGATCCGAAGTAA 177 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 |||||| || | || ||||| || |||| || ||||||||||||| |||| Sbjct 178 AGATTAAAAGAGGCAGGCGGGGACGTTTGTATGGTTGTGATAGAGGTGAAATTCATGGAC 237 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATT 295 |||| ||||| |||||||| ||| |||| |||||||||| Sbjct 238 CGTAACCAGACAAACTAAAGCGAAAGCATTCGTCAAGCCTGTTTTCATT 286 >seq6823 Length=23986 Score = 95.1 bits (104), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 5/137 (4%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97 |||||||||| ||||| ||| | || || ||||||||||| ||||| ||||| Sbjct 142 ATGCCCTTCAAAAGGTGTCTATGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 83 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||| |||||| | || ||| | || |||||||||||| ||||||||| | ||| Sbjct 82 TCAAACCAGGCCGATGTCGCCTGAAAAGTTTTGCATGGAATAATGGAATAGGAC-TTCGG 24 Query 155 TTCTATTTTGTTGGTTT 171 |||||||| |||||||| Sbjct 23 TTCTATTTCGTTGGTTT 7 >seq17928 Length=6617 Score = 86.0 bits (94), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC--TTTGCTC-GAATACATTAG 127 || ||||||||||| ||||| || | || || || ||| | || || ||| | | Sbjct 1836 ACGTTTACTTTGAACAAATTTGAATTCTCGAACCACGCCAATGTGGTCTGAAAATTGTTA 1777 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAA 186 ||||||||||| |||||||| | |||| ||||| ||||||| | ||| ||| |||| Sbjct 1776 CATGGAATAATGAAATAGGACTTA-GGTTTTATTTCTTTGGTTT-TCGGATCCGAAGTAA 1719 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 |||| || | || || ||| || ||||| | ||||||||||||| |||| Sbjct 1718 TGATCAAGGGAGACAGGTAGGGACGTTGGTATTGTTGCGCTAGAGGTGAAATTCATGGAC 1659 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATT 295 |||| ||||| |||||||| || |||| ||||||||||| Sbjct 1658 CGTAACCAGACGAACTAAAGCGAAAGCACGCAACAAGCATGTTTTCATT 1610 >seq25503 Length=3017 Score = 80.6 bits (88), Expect = 5e-13 Identities = 192/283 (68%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 38 CATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTG 96 ||||||||| | |||||| ||| | ||| || ||||||||||| |||| |||| Sbjct 1540 CATGCCCTTAAAAGGGTGTCTTTGGGCGGAAGGCACGTTTACTTTGAACAAATGTGAGTT 1481 Query 97 TTCAAAGCAGGCCTTT---GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCG 153 ||||| ||||| || || ||| || |||||||||| | ||||||||| | | Sbjct 1480 CTCAAACCAGGCAATTGTGGCATGAAACGTTTTGCATGGAATAGTGGAATAGGAC-TTCA 1422 Query 154 GTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||||| ||| |||| | ||| ||| ||| ||| || || || || | || || Sbjct 1421 GTTCTATTTCGTTTGTTT-TCGGATCCGAAGTATCGATCAAAAGAGACAGGCAAGGACGT 1363 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||| | |||||||||||| |||| |||| ||||| ||||||| Sbjct 1362 TTTTATGGTTGCGCTGGAGGTGAAATTCATGGACCGTAACCAGACAAACTAAAGCGAAAG 1303 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 | || ||| |||| || ||| || ||| ||||||| || Sbjct 1302 CATTTGTAAAGCATGTATTTATT-ATATATGAGCGAAAGTCAG 1261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914680367744