Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09-
25] 56,778 sequences; 539,424,504 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq3635 147 4e-33
seq6494 118 2e-24
seq50297 111 3e-22
seq6823 95.1 2e-17
seq17928 86.0 1e-14
seq25503 80.6 5e-13
>seq3635
Length=37909
Score = 147 bits (162), Expect = 4e-33
Identities = 208/285 (73%), Gaps = 8/285 (3%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97
|||||||||| ||||| ||| | || || ||||||||||| ||||| |||||
Sbjct 37384 ATGCCCTTCAAAAGGTGTCTATGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 37325
Query 98 TCAAAGCAGGCCTTTG---CTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
||||| |||||| || | ||| | || |||||||||||| ||||||||| | |||
Sbjct 37324 TCAAACCAGGCCGATGTCGCCTGAAAAGTTTTGCATGGAATAATGGAATAGGACTT-CGG 37266
Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213
|||||||| |||||||| | ||| ||| |||||||| || || || || ||||| ||
Sbjct 37265 TTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACAGGCGGGGACGTT 37207
Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273
|||| | ||||||||||||| |||| |||| ||||| ||||||||
Sbjct 37206 TGTATGGTTGCGCTAGAGGTGAAATTCATGGACCGTAACCAGACAAACTAAAGCGAAAGC 37147
Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
||| |||| ||||||||||| || ||| ||||||| || ||
Sbjct 37146 ATTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAGAGG 37103
>seq6494
Length=25048
Score = 118 bits (130), Expect = 2e-24
Identities = 184/254 (72%), Gaps = 12/254 (5%)
Strand=Plus/Plus
Query 68 AGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACAT 124
|| || |||||||| || ||||| ||||| ||||| |||||| || | ||| |
Sbjct 24254 AGCACGTTTACTTTTAACAAATTTGAGTGCTCAAACCAGGCCGATGTTACCTGAAACGTT 24313
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
| |||| ||||||| ||||||||| | |||||||||||||||||||| | | ||| ||
Sbjct 24314 TTGCATAGAATAATTGAATAGGACTT-CGGTTCTATTTTGTTGGTTT-TTGATCCGAAGT 24371
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTG--TCAGAGGTGAAATTC-T 241
|||||| || || || || ||||| || | || |||| ||||||||||||| |
Sbjct 24372 AATGATCAAGAGAGACAGGCGGGGACGTTTGCAT--GATTGCACTAGAGGTGAAATTCAT 24429
Query 242 TGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301
|| || |||| |||| ||| |||| ||| |||| ||||||||||| ||
Sbjct 24430 AGGCCATA-ACCAGACAGACTAAAGCGTAAGCATTCTTCAAGCATGTTTTCATTGGCCA- 24487
Query 302 TGAACGAAAGTTAG 315
||| ||||||| ||
Sbjct 24488 TGAGCGAAAGTCAG 24501
>seq50297
Length=604
Score = 111 bits (122), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 5/229 (2%)
Strand=Plus/Plus
Query 71 ACTTTTACTTTGAAAAA-ATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTA 126
|| |||||||||||||| ||| | ||| ||||| |||||| || | ||| ||
Sbjct 59 ACGTTTACTTTGAAAAACATTTGGGTGCTCAAACCAGGCCGATGTTGACTGAAACGTTTT 118
Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186
|||||||||||| ||||||||| | ||||||| || ||| |||| | | ||| ||||
Sbjct 119 GCATGGAATAATGGAATAGGACTTA-GGTTCTACTTCGTTTGTTTTTGGATCCGAAGTAA 177
Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246
|||||| || | || ||||| || |||| || ||||||||||||| ||||
Sbjct 178 AGATTAAAAGAGGCAGGCGGGGACGTTTGTATGGTTGTGATAGAGGTGAAATTCATGGAC 237
Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATT 295
|||| ||||| |||||||| ||| |||| ||||||||||
Sbjct 238 CGTAACCAGACAAACTAAAGCGAAAGCATTCGTCAAGCCTGTTTTCATT 286
>seq6823
Length=23986
Score = 95.1 bits (104), Expect = 2e-17
Identities = 105/137 (77%), Gaps = 5/137 (4%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97
|||||||||| ||||| ||| | || || ||||||||||| ||||| |||||
Sbjct 142 ATGCCCTTCAAAAGGTGTCTATGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 83
Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
||||| |||||| | || ||| | || |||||||||||| ||||||||| | |||
Sbjct 82 TCAAACCAGGCCGATGTCGCCTGAAAAGTTTTGCATGGAATAATGGAATAGGAC-TTCGG 24
Query 155 TTCTATTTTGTTGGTTT 171
|||||||| ||||||||
Sbjct 23 TTCTATTTCGTTGGTTT 7
>seq17928
Length=6617
Score = 86.0 bits (94), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC--TTTGCTC-GAATACATTAG 127
|| ||||||||||| ||||| || | || || || ||| | || || ||| | |
Sbjct 1836 ACGTTTACTTTGAACAAATTTGAATTCTCGAACCACGCCAATGTGGTCTGAAAATTGTTA 1777
Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAA 186
||||||||||| |||||||| | |||| ||||| ||||||| | ||| ||| ||||
Sbjct 1776 CATGGAATAATGAAATAGGACTTA-GGTTTTATTTCTTTGGTTT-TCGGATCCGAAGTAA 1719
Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246
|||| || | || || ||| || ||||| | ||||||||||||| ||||
Sbjct 1718 TGATCAAGGGAGACAGGTAGGGACGTTGGTATTGTTGCGCTAGAGGTGAAATTCATGGAC 1659
Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATT 295
|||| ||||| |||||||| || |||| |||||||||||
Sbjct 1658 CGTAACCAGACGAACTAAAGCGAAAGCACGCAACAAGCATGTTTTCATT 1610
>seq25503
Length=3017
Score = 80.6 bits (88), Expect = 5e-13
Identities = 192/283 (68%), Gaps = 8/283 (3%)
Strand=Plus/Minus
Query 38 CATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTG 96
||||||||| | |||||| ||| | ||| || ||||||||||| |||| ||||
Sbjct 1540 CATGCCCTTAAAAGGGTGTCTTTGGGCGGAAGGCACGTTTACTTTGAACAAATGTGAGTT 1481
Query 97 TTCAAAGCAGGCCTTT---GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCG 153
||||| ||||| || || ||| || |||||||||| | ||||||||| | |
Sbjct 1480 CTCAAACCAGGCAATTGTGGCATGAAACGTTTTGCATGGAATAGTGGAATAGGAC-TTCA 1422
Query 154 GTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212
||||||||| ||| |||| | ||| ||| ||| ||| || || || || | || ||
Sbjct 1421 GTTCTATTTCGTTTGTTT-TCGGATCCGAAGTATCGATCAAAAGAGACAGGCAAGGACGT 1363
Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272
||| | |||||||||||| |||| |||| ||||| |||||||
Sbjct 1362 TTTTATGGTTGCGCTGGAGGTGAAATTCATGGACCGTAACCAGACAAACTAAAGCGAAAG 1303
Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315
| || ||| |||| || ||| || ||| ||||||| ||
Sbjct 1302 CATTTGTAAAGCATGTATTTATT-ATATATGAGCGAAAGTCAG 1261
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914680367744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |