Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq30476 96.9 2e-18 seq15056 87.8 8e-16 seq14370 86.0 3e-15 seq14894 80.6 1e-13 seq6452 80.6 1e-13 seq12250 78.8 4e-13 seq26061 77.0 1e-12 seq11771 73.4 2e-11 >seq30476 Length=1689 Score = 96.9 bits (106), Expect = 2e-18 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| Sbjct 947 GGAAAAGAAACTAACCAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAATAGCCCAGCA 1006 Query 61 CCGAATCC 68 ||||| || Sbjct 1007 CCGAAGCC 1014 >seq15056 Length=8950 Score = 87.8 bits (96), Expect = 8e-16 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||| |||||||||||||||| ||||| ||| |||| Sbjct 8390 GGAAAAGAAACTAACCAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGATTAGCTCAGCA 8331 Query 61 CCGAATCC 68 ||||| || Sbjct 8330 CCGAAGCC 8323 >seq14370 Length=9647 Score = 86.0 bits (94), Expect = 3e-15 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||| ||||||||||||| ||||||||||||| || |||||| |||||||| Sbjct 4507 GGAAAAGAAACAAACCAGGATTCCCCTAGTAACGGCGAGTAAAGAGGGAATAGCCCAGCA 4448 Query 61 CCGAA 65 ||||| Sbjct 4447 CCGAA 4443 Score = 73.4 bits (80), Expect = 2e-11 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||| ||||| ||||||||||||| ||||| |||||||||| |||||| |||| ||| Sbjct 209 GGAAACGAAACAAACCAGGATTCCCCTAGTAATGGCGAGTGAAGAGGGAATAGCCAAGCA 268 Query 61 CCGAA 65 || || Sbjct 269 CCAAA 273 >seq14894 Length=9118 Score = 80.6 bits (88), Expect = 1e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||| |||||||||||||||| |||||||||||||||| ||||| || |||| Sbjct 8149 GGAAAAGATACTAACCAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGATTAGATCAGCA 8090 Query 61 CCGAATCCC 69 ||||| ||| Sbjct 8089 CCGAAGCCC 8081 >seq6452 Length=25202 Score = 80.6 bits (88), Expect = 1e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||| |||||||||||||||| |||||||||||||||| ||||| || |||| Sbjct 1104 GGAAAAGATACTAACCAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGATTAGATCAGCA 1045 Query 61 CCGAATCCC 69 ||||| ||| Sbjct 1044 CCGAAGCCC 1036 >seq12250 Length=12257 Score = 78.8 bits (86), Expect = 4e-13 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||| |||||||||||||||||||| |||||||||||||||| ||||| ||| |||| Sbjct 6967 GGAACAGAAACTAACCAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGATTAGCTCAGCA 7026 Query 61 CCGAATCC 68 | ||| || Sbjct 7027 CTGAAGCC 7034 >seq26061 Length=2792 Score = 77.0 bits (84), Expect = 1e-12 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||| ||||||||||| | || | |||| |||||||| Sbjct 537 GGAAAAGAAACTAACCAGGATTCCCCAAGTAACGGCGATTAAAGATGGAAAAGCCCAGCA 478 Query 61 CC 62 || Sbjct 477 CC 476 >seq11771 Length=12966 Score = 73.4 bits (80), Expect = 2e-11 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||| ||||| || ||||||||| || |||||||||||| |||||| |||||||| Sbjct 506 GGAAAATAAACTTACGAGGATTCCCCTTGTTACGGCGAGTGAAGAGGGAATAGCCCAGCA 565 Query 61 CCGAATCC 68 ||||| || Sbjct 566 CCGAAGCC 573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230277359520