Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09-
25] 56,778 sequences; 539,424,504 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq26061 170 3e-40
seq25503 143 4e-32
seq19647 143 4e-32
seq47650 127 3e-27
seq33564 107 3e-21
seq11011 107 3e-21
seq12450 102 1e-19
seq1714 102 1e-19
seq13778 95.1 2e-17
seq10131 95.1 2e-17
seq7445 95.1 2e-17
seq21262 91.5 2e-16
seq53422 89.7 8e-16
seq6452 87.8 3e-15
seq11991 82.4 1e-13
seq28945 80.6 4e-13
seq54669 77.0 5e-12
seq24567 75.2 2e-11
seq20233 75.2 2e-11
seq17661 75.2 2e-11
seq880 75.2 2e-11
>seq26061
Length=2792
Score = 170 bits (188), Expect = 3e-40
Identities = 108/117 (92%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||||| || |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 939 CTAATTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 998
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 999 ACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAAGAGCTATCAATCTGTC 1055
Score = 107 bits (118), Expect = 3e-21
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| |||||| ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 617 ACTCGTTGGCACCGTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 676
Query 62 CCTGTTATTGCCTCAA 77
|||||||||| |||||
Sbjct 677 CCTGTTATTG-CTCAA 691
>seq25503
Length=3017
Score = 143 bits (158), Expect = 4e-32
Identities = 102/117 (87%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| ||| |||| || |||||| ||||||||||||||||||| |||||| || |||||
Sbjct 892 CTAATTATCAGGCTAGAGTCTCGGTCGTTATCGGAATTAACCAACCAAATCGCTTCACCA 951
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 952 ACTAAGAACGGCCATGCACCATTAACCATTAAATCAAGAAAGAGCTATCAATCTGTC 1008
>seq19647
Length=5558
Score = 143 bits (158), Expect = 4e-32
Identities = 102/117 (87%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| | |||| | || |||||||||||||||||||||||||||||||||| ||||| |
Sbjct 2286 CTAATAAGCAAGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCATTA 2227
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||| ||| |||||||||| ||||||| |||||||
Sbjct 2226 ACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAACAGCTATCTATCTGTC 2170
Score = 75.2 bits (82), Expect = 2e-11
Identities = 63/76 (83%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| |||||| |||||||||| | ||| | | |||||||||||||||||| |
Sbjct 2608 ACTCGTTGGCACCGTCATTGTAGCGCGCATACGGTTCCGGACATCTAAGGGCATCACAAA 2549
Query 62 CCTGTTATTGCCTCAA 77
||| || ||| |||||
Sbjct 2548 CCTATTTTTG-CTCAA 2534
>seq47650
Length=667
Score = 127 bits (140), Expect = 3e-27
Identities = 94/110 (85%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 148 AGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAG 207
|||| | || |||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct 49 AGCAAGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCATTATCTAAG 108
Query 208 AACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257
||||||||||||| |||| |||| |||||||||||| |||||| |||
Sbjct 109 AACGGCCATGCACAACCAACCATCAAATCAAGAAAGACTCATCAATTTGT 158
>seq33564
Length=1329
Score = 107 bits (118), Expect = 3e-21
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| |||||| ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1037 ACTCGTTGGCACCGTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 1096
Query 62 CCTGTTATTGCCTCAA 77
|||||||||| |||||
Sbjct 1097 CCTGTTATTG-CTCAA 1111
>seq11011
Length=14151
Score = 107 bits (118), Expect = 3e-21
Identities = 94/117 (80%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| | |||||| || |||||||| ||||||||| |||||||||| || || | |||
Sbjct 11492 CTAATCAGCAGGCTAGAATCTCGTTCATTATCGGAAGTAACCAGACAGATTGCTACGCCA 11433
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
| |||||||||||||||| |||| | | |||||||| ||||||| |||||||||
Sbjct 11432 AGTAAGAACGGCCATGCATTACCAACAACCAAATCAAGAGAGAGCTAGCAATCTGTC 11376
>seq12450
Length=11984
Score = 102 bits (112), Expect = 1e-19
Identities = 91/113 (81%), Gaps = 1/113 (1%)
Strand=Plus/Plus
Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205
|||||||| || ||||||||||||||| || ||||||||| ||| | |||||| ||
Sbjct 8530 TTAGCAGGCTAGAATCTCGTTCGTTATCGAAAGTAACCAGACGAATTGCAACACCAAGTA 8589
Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
| |||||||||||| |||| ||| ||||| || ||||||| |||||||||
Sbjct 8590 A-AACGGCCATGCATTACCAACCACCAAATCAGGAGAGAGCTAGCAATCTGTC 8641
Score = 80.6 bits (88), Expect = 4e-13
Identities = 64/76 (84%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| ||||| || ||| |||||| ||||| | |||| | |||||||||||||
Sbjct 8206 ACTCGTTGGCAGCGTCATTGAAGCACGCGTGTGGCCCTGTACATTTCAGGGCATCACAGA 8265
Query 62 CCTGTTATTGCCTCAA 77
|||||||||| |||||
Sbjct 8266 CCTGTTATTG-CTCAA 8280
>seq1714
Length=55938
Score = 102 bits (112), Expect = 1e-19
Identities = 79/94 (84%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 163 CGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222
|||||||||||||||| ||||||||||| ||||||| | ||||||||||||||||
Sbjct 19662 CGTTCGTTATCGGAATATACCAGACAAATGTCTCCACCGAGTAAGAACGGCCATGCATTG 19603
Query 223 CCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256
||| ||| ||||||||||| |||| |||||||
Sbjct 19602 CCAACCACCAAATCAAGAAAGGGCTAGCAATCTG 19569
Score = 80.6 bits (88), Expect = 4e-13
Identities = 64/76 (84%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
|| || |||| ||||| ||||| |||||||| |||| | | |||||||||| |||||||
Sbjct 19961 ACACGTTGGCAGCGTCATTGTAGGGCGCGTGCAGCCCCGGAGATCTAAGGGCTTCACAGA 19902
Query 62 CCTGTTATTGCCTCAA 77
|||||||||| |||||
Sbjct 19901 CCTGTTATTG-CTCAA 19887
>seq13778
Length=10297
Score = 95.1 bits (104), Expect = 2e-17
Identities = 92/117 (79%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||||| || ||||| ||||||||| || ||||||||||||| | |||||
Sbjct 6250 CTAATTAGCAGGCTAGAATCTCGATCGTTATCGAAAGTAACCAGACAAATTGCAACACCA 6191
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
| ||| || ||||||||| ||| ||| |||||| | ||||||| |||||||||
Sbjct 6190 AGTAA-AATGGCCATGCATTCCCAACCACCAAATCAACAGAGAGCTAGCAATCTGTC 6135
Score = 84.2 bits (92), Expect = 3e-14
Identities = 65/76 (86%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| ||||| || | ||||||| ||||| |||||||| |||||||||||||
Sbjct 6570 ACTCGTTGGCAGCGTCATTGAATTGCGCGTGTGGCCCTGAACATCTCAGGGCATCACAGA 6511
Query 62 CCTGTTATTGCCTCAA 77
|||||||||| |||||
Sbjct 6510 CCTGTTATTG-CTCAA 6496
>seq10131
Length=15762
Score = 95.1 bits (104), Expect = 2e-17
Identities = 81/100 (81%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
|| ||||||||||| ||||||||||||||||| ||||| | | ||||||||| |||||
Sbjct 15722 GTGTCGTTCGTTATATGAATTAACCAGACAAATTGCTCCATCGAGTAAGAACGGTCATGC 15663
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
| | || ||| ||||||||||| ||| |||||||||
Sbjct 15662 ATTAACAACCACCAAATCAAGAAAGGACTAGCAATCTGTC 15623
>seq7445
Length=22135
Score = 95.1 bits (104), Expect = 2e-17
Identities = 92/117 (79%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| | || ||| || ||||||||||||||| || ||||||||||||| | |||||
Sbjct 16763 CTAATAAGAAGGCTAGAATCTCGTTCGTTATCGAAAGTAACCAGACAAATTGCAACACCA 16704
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
| ||| |||||||||||| | || ||| |||||||| ||||| | |||||||||
Sbjct 16703 AGTAA-AACGGCCATGCATTAACAACCACCAAATCAAGAGAGAGCGAGCAATCTGTC 16648
Score = 84.2 bits (92), Expect = 3e-14
Identities = 65/76 (86%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| ||||| || |||||||||| ||||| | |||||| ||||||||| |||
Sbjct 17083 ACTCGTTGGCAGCGTCATTGAAGCGCGCGTGTGGCCCTGGACATCTCAGGGCATCAAAGA 17024
Query 62 CCTGTTATTGCCTCAA 77
|||||||||| |||||
Sbjct 17023 CCTGTTATTG-CTCAA 17009
>seq21262
Length=4742
Score = 91.5 bits (100), Expect = 2e-16
Identities = 91/117 (78%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||| ||| || |||| | ||||||| ||||| ||||||||| || ||||||||
Sbjct 2759 CTAATTAGAAGGATAGAGTCTAGGTCGTTATAAGAATTTACCAGACAA-TCGCTCCACCA 2701
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
| |||||| || |||| || || ||| |||||| || |||||||||||||||
Sbjct 2700 AATAAGAAAATCCCTGCATCAGCAACCACCAAATCAATCAAAAGCTATCAATCTGTC 2644
>seq53422
Length=546
Score = 89.7 bits (98), Expect = 8e-16
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
|||| ||| |||||| ||||||||||||||||||| | | ||||| ||||||||||||
Sbjct 439 ACTCTTTGGTACCGTCATTGTAGCGCGCGTGCGGCCCCGGAGATCTATGGGCATCACAGA 498
Query 62 CCTGTTATTGCCTCAA 77
|||||||||| |||||
Sbjct 499 CCTGTTATTG-CTCAA 513
>seq6452
Length=25202
Score = 87.8 bits (96), Expect = 3e-15
Identities = 57/63 (90%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||||| || |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 10087 CTAATTAGCAGGCTAGAGTCTCGTTTGTTATAGGAATTAACCAGACAAATCACTCCACCA 10146
Query 202 ACT 204
|||
Sbjct 10147 ACT 10149
Score = 80.6 bits (88), Expect = 4e-13
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||||||| || || ||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 1897 CTATTTAGCAGGCTAGAGTATCGTTTGTTATAGGAATCAACCAGACAAATCACTCCACCA 1956
Query 202 AC 203
||
Sbjct 1957 AC 1958
>seq11991
Length=12637
Score = 82.4 bits (90), Expect = 1e-13
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| |||||| |||||||||| ||| |||| ||||||||||||||||||||
Sbjct 7699 ACTCGTTGGCACCGTCATTGTAGCGCGCATGCAGCCCCAGACATCTAAGGGCATCACAGA 7758
Query 62 CCTGTTATTG 71
||| || |||
Sbjct 7759 CCTCTTCTTG 7768
>seq28945
Length=1958
Score = 80.6 bits (88), Expect = 4e-13
Identities = 59/69 (86%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 4 TCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 63
||| |||| |||||| ||||||| |||||||| | | ||||||||||||||||||||||
Sbjct 622 TCGTTGGCACCGTCATTGTAGCGTTCGTGCGGCTCCGGACATCTAAGGGCATCACAGACC 563
Query 64 TGTTATTGC 72
||| ||||
Sbjct 562 TGTGGTTGC 554
>seq54669
Length=528
Score = 77.0 bits (84), Expect = 5e-12
Identities = 51/57 (89%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||| |||||||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct 1 ACTAAAAACGGCCATGCACCACCAACCACCAAATCAAGAAATAGCTATCAATCTGTC 57
>seq24567
Length=3406
Score = 75.2 bits (82), Expect = 2e-11
Identities = 65/77 (84%), Gaps = 3/77 (4%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCC-CAGAACATCTAAGGGCATCACAG 60
||||| || |||||| ||||||||||| || ||| |||| ||||||||||||||||||
Sbjct 2327 ACTCGTTGCGACCGTCATTGTAGCGCGCGCGCAGCCTCAGA-CATCTAAGGGCATCACAG 2269
Query 61 ACCTGTTATTGCCTCAA 77
|||| || ||| |||||
Sbjct 2268 ACCTCTTCTTG-CTCAA 2253
>seq20233
Length=5247
Score = 75.2 bits (82), Expect = 2e-11
Identities = 63/76 (83%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| || ||| ||||||||||| || |||| ||||||||||||| ||||||
Sbjct 1799 ACTCGTTGGCACCATCATTGTAGCGCGCGCGCAGCCCCAGACATCTAAGGGCACCACAGA 1858
Query 62 CCTGTTATTGCCTCAA 77
||| || ||| |||||
Sbjct 1859 CCTATTCTTG-CTCAA 1873
>seq17661
Length=6812
Score = 75.2 bits (82), Expect = 2e-11
Identities = 63/76 (83%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| || || ||||||||||| || |||| ||||||||||||||||||||
Sbjct 1465 ACTCGTTGGCACCAGCATTGTAGCGCGCGCGCAGCCCCAGACATCTAAGGGCATCACAGA 1524
Query 62 CCTGTTATTGCCTCAA 77
||| || ||| |||||
Sbjct 1525 CCTCTTCTTG-CTCAA 1539
Score = 73.4 bits (80), Expect = 6e-11
Identities = 92/119 (77%), Gaps = 12/119 (10%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCC-CAGAACATCTAAGGGCATCACAG 60
||||| || | |||||| ||| |||||||||| ||| ||||| ||||||| |||||||||
Sbjct 3756 ACTCGTTGCCACCGTCATTGTTGCGCGCGTGCAGCCGCAGAA-ATCTAAGTGCATCACAG 3814
Query 61 ACCTGTTATTGCCTCAA---ACTTC-CATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
|||| || ||| |||| |||| |||| || | || | ||||||||||||||
Sbjct 3815 ACCTCTTCTTG-TTCAATTTCCTTCACATT--CTTAATGC---TTGTCCCTCTAAGAAG 3867
>seq880
Length=72848
Score = 75.2 bits (82), Expect = 2e-11
Identities = 75/96 (78%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 163 CGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222
|||||| || |||||| | ||| ||||| || | |||| |||||||||| |||||||
Sbjct 7496 CGTTCGATAGTGGAATTGAACAGCTAAATCGCTTCCCCAATTAAGAACGGCTATGCACCG 7437
Query 223 CCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|| || | ||| |||||||||||||||| ||||
Sbjct 7436 CCGGTCACA-AATGCAGAAAGAGCTATCAATATGTC 7402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796361730618
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |