Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq26061 170 3e-40 seq25503 143 4e-32 seq19647 143 4e-32 seq47650 127 3e-27 seq33564 107 3e-21 seq11011 107 3e-21 seq12450 102 1e-19 seq1714 102 1e-19 seq13778 95.1 2e-17 seq10131 95.1 2e-17 seq7445 95.1 2e-17 seq21262 91.5 2e-16 seq53422 89.7 8e-16 seq6452 87.8 3e-15 seq11991 82.4 1e-13 seq28945 80.6 4e-13 seq54669 77.0 5e-12 seq24567 75.2 2e-11 seq20233 75.2 2e-11 seq17661 75.2 2e-11 seq880 75.2 2e-11 >seq26061 Length=2792 Score = 170 bits (188), Expect = 3e-40 Identities = 108/117 (92%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| || |||||||||||||||||||||||||||||||||| |||||||| Sbjct 939 CTAATTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 998 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 999 ACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAAGAGCTATCAATCTGTC 1055 Score = 107 bits (118), Expect = 3e-21 Identities = 70/76 (92%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 617 ACTCGTTGGCACCGTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 676 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 677 CCTGTTATTG-CTCAA 691 >seq25503 Length=3017 Score = 143 bits (158), Expect = 4e-32 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| ||| |||| || |||||| ||||||||||||||||||| |||||| || ||||| Sbjct 892 CTAATTATCAGGCTAGAGTCTCGGTCGTTATCGGAATTAACCAACCAAATCGCTTCACCA 951 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||| | |||| |||||||||||||||||||||||||| Sbjct 952 ACTAAGAACGGCCATGCACCATTAACCATTAAATCAAGAAAGAGCTATCAATCTGTC 1008 >seq19647 Length=5558 Score = 143 bits (158), Expect = 4e-32 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| | |||| | || |||||||||||||||||||||||||||||||||| ||||| | Sbjct 2286 CTAATAAGCAAGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCATTA 2227 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||| Sbjct 2226 ACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAACAGCTATCTATCTGTC 2170 Score = 75.2 bits (82), Expect = 2e-11 Identities = 63/76 (83%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| |||||||||| | ||| | | |||||||||||||||||| | Sbjct 2608 ACTCGTTGGCACCGTCATTGTAGCGCGCATACGGTTCCGGACATCTAAGGGCATCACAAA 2549 Query 62 CCTGTTATTGCCTCAA 77 ||| || ||| ||||| Sbjct 2548 CCTATTTTTG-CTCAA 2534 >seq47650 Length=667 Score = 127 bits (140), Expect = 3e-27 Identities = 94/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 148 AGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAG 207 |||| | || |||||||||||||||||||||||||||||||||| ||||| | ||||| Sbjct 49 AGCAAGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCATTATCTAAG 108 Query 208 AACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||||||||||||| |||| |||| |||||||||||| |||||| ||| Sbjct 109 AACGGCCATGCACAACCAACCATCAAATCAAGAAAGACTCATCAATTTGT 158 >seq33564 Length=1329 Score = 107 bits (118), Expect = 3e-21 Identities = 70/76 (92%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 1037 ACTCGTTGGCACCGTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 1096 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 1097 CCTGTTATTG-CTCAA 1111 >seq11011 Length=14151 Score = 107 bits (118), Expect = 3e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| | |||||| || |||||||| ||||||||| |||||||||| || || | ||| Sbjct 11492 CTAATCAGCAGGCTAGAATCTCGTTCATTATCGGAAGTAACCAGACAGATTGCTACGCCA 11433 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||||||||||||| |||| | | |||||||| ||||||| ||||||||| Sbjct 11432 AGTAAGAACGGCCATGCATTACCAACAACCAAATCAAGAGAGAGCTAGCAATCTGTC 11376 >seq12450 Length=11984 Score = 102 bits (112), Expect = 1e-19 Identities = 91/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||||| || ||||||||||||||| || ||||||||| ||| | |||||| || Sbjct 8530 TTAGCAGGCTAGAATCTCGTTCGTTATCGAAAGTAACCAGACGAATTGCAACACCAAGTA 8589 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||||||||| |||| ||| ||||| || ||||||| ||||||||| Sbjct 8590 A-AACGGCCATGCATTACCAACCACCAAATCAGGAGAGAGCTAGCAATCTGTC 8641 Score = 80.6 bits (88), Expect = 4e-13 Identities = 64/76 (84%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| ||||| || ||| |||||| ||||| | |||| | ||||||||||||| Sbjct 8206 ACTCGTTGGCAGCGTCATTGAAGCACGCGTGTGGCCCTGTACATTTCAGGGCATCACAGA 8265 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 8266 CCTGTTATTG-CTCAA 8280 >seq1714 Length=55938 Score = 102 bits (112), Expect = 1e-19 Identities = 79/94 (84%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 163 CGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222 |||||||||||||||| ||||||||||| ||||||| | |||||||||||||||| Sbjct 19662 CGTTCGTTATCGGAATATACCAGACAAATGTCTCCACCGAGTAAGAACGGCCATGCATTG 19603 Query 223 CCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 ||| ||| ||||||||||| |||| ||||||| Sbjct 19602 CCAACCACCAAATCAAGAAAGGGCTAGCAATCTG 19569 Score = 80.6 bits (88), Expect = 4e-13 Identities = 64/76 (84%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 || || |||| ||||| ||||| |||||||| |||| | | |||||||||| ||||||| Sbjct 19961 ACACGTTGGCAGCGTCATTGTAGGGCGCGTGCAGCCCCGGAGATCTAAGGGCTTCACAGA 19902 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 19901 CCTGTTATTG-CTCAA 19887 >seq13778 Length=10297 Score = 95.1 bits (104), Expect = 2e-17 Identities = 92/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| || ||||| ||||||||| || ||||||||||||| | ||||| Sbjct 6250 CTAATTAGCAGGCTAGAATCTCGATCGTTATCGAAAGTAACCAGACAAATTGCAACACCA 6191 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | ||| || ||||||||| ||| ||| |||||| | ||||||| ||||||||| Sbjct 6190 AGTAA-AATGGCCATGCATTCCCAACCACCAAATCAACAGAGAGCTAGCAATCTGTC 6135 Score = 84.2 bits (92), Expect = 3e-14 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| ||||| || | ||||||| ||||| |||||||| ||||||||||||| Sbjct 6570 ACTCGTTGGCAGCGTCATTGAATTGCGCGTGTGGCCCTGAACATCTCAGGGCATCACAGA 6511 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 6510 CCTGTTATTG-CTCAA 6496 >seq10131 Length=15762 Score = 95.1 bits (104), Expect = 2e-17 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 || ||||||||||| ||||||||||||||||| ||||| | | ||||||||| ||||| Sbjct 15722 GTGTCGTTCGTTATATGAATTAACCAGACAAATTGCTCCATCGAGTAAGAACGGTCATGC 15663 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | | || ||| ||||||||||| ||| ||||||||| Sbjct 15662 ATTAACAACCACCAAATCAAGAAAGGACTAGCAATCTGTC 15623 >seq7445 Length=22135 Score = 95.1 bits (104), Expect = 2e-17 Identities = 92/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| | || ||| || ||||||||||||||| || ||||||||||||| | ||||| Sbjct 16763 CTAATAAGAAGGCTAGAATCTCGTTCGTTATCGAAAGTAACCAGACAAATTGCAACACCA 16704 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | ||| |||||||||||| | || ||| |||||||| ||||| | ||||||||| Sbjct 16703 AGTAA-AACGGCCATGCATTAACAACCACCAAATCAAGAGAGAGCGAGCAATCTGTC 16648 Score = 84.2 bits (92), Expect = 3e-14 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| ||||| || |||||||||| ||||| | |||||| ||||||||| ||| Sbjct 17083 ACTCGTTGGCAGCGTCATTGAAGCGCGCGTGTGGCCCTGGACATCTCAGGGCATCAAAGA 17024 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 17023 CCTGTTATTG-CTCAA 17009 >seq21262 Length=4742 Score = 91.5 bits (100), Expect = 2e-16 Identities = 91/117 (78%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||| ||| || |||| | ||||||| ||||| ||||||||| || |||||||| Sbjct 2759 CTAATTAGAAGGATAGAGTCTAGGTCGTTATAAGAATTTACCAGACAA-TCGCTCCACCA 2701 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||| || |||| || || ||| |||||| || ||||||||||||||| Sbjct 2700 AATAAGAAAATCCCTGCATCAGCAACCACCAAATCAATCAAAAGCTATCAATCTGTC 2644 >seq53422 Length=546 Score = 89.7 bits (98), Expect = 8e-16 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 |||| ||| |||||| ||||||||||||||||||| | | ||||| |||||||||||| Sbjct 439 ACTCTTTGGTACCGTCATTGTAGCGCGCGTGCGGCCCCGGAGATCTATGGGCATCACAGA 498 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 499 CCTGTTATTG-CTCAA 513 >seq6452 Length=25202 Score = 87.8 bits (96), Expect = 3e-15 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| || |||||||| ||||| |||||||||||||||||||||||||||| Sbjct 10087 CTAATTAGCAGGCTAGAGTCTCGTTTGTTATAGGAATTAACCAGACAAATCACTCCACCA 10146 Query 202 ACT 204 ||| Sbjct 10147 ACT 10149 Score = 80.6 bits (88), Expect = 4e-13 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| || || ||||| ||||| ||||| |||||||||||||||||||||| Sbjct 1897 CTATTTAGCAGGCTAGAGTATCGTTTGTTATAGGAATCAACCAGACAAATCACTCCACCA 1956 Query 202 AC 203 || Sbjct 1957 AC 1958 >seq11991 Length=12637 Score = 82.4 bits (90), Expect = 1e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| |||||||||| ||| |||| |||||||||||||||||||| Sbjct 7699 ACTCGTTGGCACCGTCATTGTAGCGCGCATGCAGCCCCAGACATCTAAGGGCATCACAGA 7758 Query 62 CCTGTTATTG 71 ||| || ||| Sbjct 7759 CCTCTTCTTG 7768 >seq28945 Length=1958 Score = 80.6 bits (88), Expect = 4e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 4 TCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 63 ||| |||| |||||| ||||||| |||||||| | | |||||||||||||||||||||| Sbjct 622 TCGTTGGCACCGTCATTGTAGCGTTCGTGCGGCTCCGGACATCTAAGGGCATCACAGACC 563 Query 64 TGTTATTGC 72 ||| |||| Sbjct 562 TGTGGTTGC 554 >seq54669 Length=528 Score = 77.0 bits (84), Expect = 5e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| |||||||||||||||||| ||| |||||||||| ||||||||||||||| Sbjct 1 ACTAAAAACGGCCATGCACCACCAACCACCAAATCAAGAAATAGCTATCAATCTGTC 57 >seq24567 Length=3406 Score = 75.2 bits (82), Expect = 2e-11 Identities = 65/77 (84%), Gaps = 3/77 (4%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCC-CAGAACATCTAAGGGCATCACAG 60 ||||| || |||||| ||||||||||| || ||| |||| |||||||||||||||||| Sbjct 2327 ACTCGTTGCGACCGTCATTGTAGCGCGCGCGCAGCCTCAGA-CATCTAAGGGCATCACAG 2269 Query 61 ACCTGTTATTGCCTCAA 77 |||| || ||| ||||| Sbjct 2268 ACCTCTTCTTG-CTCAA 2253 >seq20233 Length=5247 Score = 75.2 bits (82), Expect = 2e-11 Identities = 63/76 (83%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| || ||| ||||||||||| || |||| ||||||||||||| |||||| Sbjct 1799 ACTCGTTGGCACCATCATTGTAGCGCGCGCGCAGCCCCAGACATCTAAGGGCACCACAGA 1858 Query 62 CCTGTTATTGCCTCAA 77 ||| || ||| ||||| Sbjct 1859 CCTATTCTTG-CTCAA 1873 >seq17661 Length=6812 Score = 75.2 bits (82), Expect = 2e-11 Identities = 63/76 (83%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| || || ||||||||||| || |||| |||||||||||||||||||| Sbjct 1465 ACTCGTTGGCACCAGCATTGTAGCGCGCGCGCAGCCCCAGACATCTAAGGGCATCACAGA 1524 Query 62 CCTGTTATTGCCTCAA 77 ||| || ||| ||||| Sbjct 1525 CCTCTTCTTG-CTCAA 1539 Score = 73.4 bits (80), Expect = 6e-11 Identities = 92/119 (77%), Gaps = 12/119 (10%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCC-CAGAACATCTAAGGGCATCACAG 60 ||||| || | |||||| ||| |||||||||| ||| ||||| ||||||| ||||||||| Sbjct 3756 ACTCGTTGCCACCGTCATTGTTGCGCGCGTGCAGCCGCAGAA-ATCTAAGTGCATCACAG 3814 Query 61 ACCTGTTATTGCCTCAA---ACTTC-CATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 |||| || ||| |||| |||| |||| || | || | |||||||||||||| Sbjct 3815 ACCTCTTCTTG-TTCAATTTCCTTCACATT--CTTAATGC---TTGTCCCTCTAAGAAG 3867 >seq880 Length=72848 Score = 75.2 bits (82), Expect = 2e-11 Identities = 75/96 (78%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 163 CGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222 |||||| || |||||| | ||| ||||| || | |||| |||||||||| ||||||| Sbjct 7496 CGTTCGATAGTGGAATTGAACAGCTAAATCGCTTCCCCAATTAAGAACGGCTATGCACCG 7437 Query 223 CCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || || | ||| |||||||||||||||| |||| Sbjct 7436 CCGGTCACA-AATGCAGAAAGAGCTATCAATATGTC 7402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796361730618