Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq12250 78.8 2e-12 >seq12250 Length=12257 Score = 78.8 bits (86), Expect = 2e-12 Identities = 87/115 (76%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 2515 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAATCGTAACGCAGGTG 2574 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| |||||| ||| | ||| || |||||||| Sbjct 2575 TCCCAAGGTGAGCTCAGCCAGGACAGAAACCTGGCGTAGAGTAAAAGGGCAAAAG 2629 Score = 78.8 bits (86), Expect = 2e-12 Identities = 87/115 (76%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||| ||||||| | || |||| |||||| ||| | Sbjct 11373 GACAGTGTCAGGCGGGGAGTTTGACTTGGGCGGTACATCTGTCAAATCGTAACGCAGGTG 11432 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| |||| |||||| ||| | ||| || |||||||| Sbjct 11433 TCCCAAGGTGAGCTCAGCCAGGATAGAAACCTGGCGTAGAGTTAAAGGGCAAAAG 11487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981842212928