Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq33564 91.5 9e-17 seq27411 75.2 7e-12 seq28945 73.4 2e-11 seq24943 73.4 2e-11 seq23355 73.4 2e-11 seq6452 73.4 2e-11 >seq33564 Length=1329 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 || ||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 851 CTTACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 908 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 909 TAAT-CAGCGCAAGCT 923 >seq27411 Length=2336 Score = 75.2 bits (82), Expect = 7e-12 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 34 CCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTA 93 ||||| |||| || || ||||| ||||| || ||| ||||| |||||||||| | ||| Sbjct 1665 CCAAT-CCGAG-GTCCTAACTAAACCATT-CAATCGTTAGTAT-CGACGGGCGGTGAGTA 1720 Query 94 CAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||||||| ||||||| || |||||||| Sbjct 1721 CAAAGGGCAGGCACGTAAT-CAGCGCAAGCT 1750 >seq28945 Length=1958 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 || ||||| ||||| || |||||| |||||| || || |||||||||||||||||||| Sbjct 977 CTTACTAAACCATT-CAATCGGTAC-AAGCGATGGTTGGTGTGTACAAAGGGCAGGGACG 920 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 919 TAAT-CAGCGCAAGCT 905 >seq24943 Length=3245 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 || ||||| ||||| || ||||||||| ||||||||| |||||||||||||||| ||| Sbjct 1848 CTTACTAAACCATT-CAATCGGTAGTAT-CGACGGGCGTTGTGTACAAAGGGCAGGAACG 1791 Query 109 TAATACAACGCAAGCT 124 |||| || | |||||| Sbjct 1790 TAAT-CAGCTCAAGCT 1776 >seq23355 Length=3894 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| | ||||| || ||||||||| ||||||| || ||||||||| ||||||||| Sbjct 2512 CTCACTTAACCATT-CAATCGGTAGTAT-CGACGGGTGGTTTGTACAAAGTGCAGGGACG 2455 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 2454 TAAT-CAGCGCAAGCT 2440 >seq6452 Length=25202 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 || ||||| || || || ||||||||| ||||||||| ||||||||||||||||||| Sbjct 9579 CTTACTAAACCGTT-CAATCGGTAGTATT-GACGGGCGGTGTGTACAAAGGGCAGGGACA 9636 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 9637 TAAT-CAGCGCAAGCT 9651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300639886040