Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09-
25] 56,778 sequences; 539,424,504 total letters
Query= AAMG01001382.1
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
seq33564 91.5 9e-17
seq27411 75.2 7e-12
seq28945 73.4 2e-11
seq24943 73.4 2e-11
seq23355 73.4 2e-11
seq6452 73.4 2e-11
>seq33564
Length=1329
Score = 91.5 bits (100), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|| ||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 851 CTTACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 908
Query 109 TAATACAACGCAAGCT 124
|||| || ||||||||
Sbjct 909 TAAT-CAGCGCAAGCT 923
>seq27411
Length=2336
Score = 75.2 bits (82), Expect = 7e-12
Identities = 75/91 (82%), Gaps = 5/91 (5%)
Strand=Plus/Plus
Query 34 CCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTA 93
||||| |||| || || ||||| ||||| || ||| ||||| |||||||||| | |||
Sbjct 1665 CCAAT-CCGAG-GTCCTAACTAAACCATT-CAATCGTTAGTAT-CGACGGGCGGTGAGTA 1720
Query 94 CAAAGGGCAGGGACGTAATACAACGCAAGCT 124
||||||||||| ||||||| || ||||||||
Sbjct 1721 CAAAGGGCAGGCACGTAAT-CAGCGCAAGCT 1750
>seq28945
Length=1958
Score = 73.4 bits (80), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|| ||||| ||||| || |||||| |||||| || || ||||||||||||||||||||
Sbjct 977 CTTACTAAACCATT-CAATCGGTAC-AAGCGATGGTTGGTGTGTACAAAGGGCAGGGACG 920
Query 109 TAATACAACGCAAGCT 124
|||| || ||||||||
Sbjct 919 TAAT-CAGCGCAAGCT 905
>seq24943
Length=3245
Score = 73.4 bits (80), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|| ||||| ||||| || ||||||||| ||||||||| |||||||||||||||| |||
Sbjct 1848 CTTACTAAACCATT-CAATCGGTAGTAT-CGACGGGCGTTGTGTACAAAGGGCAGGAACG 1791
Query 109 TAATACAACGCAAGCT 124
|||| || | ||||||
Sbjct 1790 TAAT-CAGCTCAAGCT 1776
>seq23355
Length=3894
Score = 73.4 bits (80), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||| | ||||| || ||||||||| ||||||| || ||||||||| |||||||||
Sbjct 2512 CTCACTTAACCATT-CAATCGGTAGTAT-CGACGGGTGGTTTGTACAAAGTGCAGGGACG 2455
Query 109 TAATACAACGCAAGCT 124
|||| || ||||||||
Sbjct 2454 TAAT-CAGCGCAAGCT 2440
>seq6452
Length=25202
Score = 73.4 bits (80), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|| ||||| || || || ||||||||| ||||||||| |||||||||||||||||||
Sbjct 9579 CTTACTAAACCGTT-CAATCGGTAGTATT-GACGGGCGGTGTGTACAAAGGGCAGGGACA 9636
Query 109 TAATACAACGCAAGCT 124
|||| || ||||||||
Sbjct 9637 TAAT-CAGCGCAAGCT 9651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300639886040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |