Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq6823 75.2 1e-11 seq3635 75.2 1e-11 >seq6823 Length=23986 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/104 (77%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| |||||| || | ||||||||| |||||||||||| || | ||| |||| Sbjct 7 AAACCAACGAAATAGAACCGAA-GTCCTATTCCATTATTCCATGCAAAACTTTTCAGGCG 65 Query 70 ---TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 | ||||| ||||| ||||| ||||| |||| ||||| || Sbjct 66 ACATCGGCCTGGTTTGAGCACTCAAATTTGTTCAAAGTAAACGT 109 >seq3635 Length=37909 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/104 (77%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| |||||| || | ||||||||| |||||||||||| || | ||| |||| Sbjct 37249 AAACCAACGAAATAGAACCGAA-GTCCTATTCCATTATTCCATGCAAAACTTTTCAGGCG 37307 Query 70 ---TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 | ||||| ||||| ||||| ||||| |||| ||||| || Sbjct 37308 ACATCGGCCTGGTTTGAGCACTCAAATTTGTTCAAAGTAAACGT 37351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594872618052