Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3635 89.7 5e-16 seq6823 78.8 1e-12 seq6494 73.4 4e-11 >seq3635 Length=37909 Score = 89.7 bits (98), Expect = 5e-16 Identities = 129/179 (72%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTAC 66 || ||||||||||| ||||| ||| | ||||| |||||| | || ||| | || Sbjct 37351 ACGTTTACTTTGAACAAATTTGAGTGCTCAAACCAGGCCGATGTCGCCTGAAAAGTTTTG 37292 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | ||||||||||| || ||||| | ||| | |||| Sbjct 37291 CATGGAATAATGGAATAGGAC-TTCGGTTCTATTTCGTTGGTTT-TCGGATCCGAAGTAA 37234 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | || || ||||| || |||| | | ||||||||||| |||| Sbjct 37233 TGATCAAAAGAGACAGGCGGGGACGTTTGTATGGTTGCGCTAGAGGTGAAATTCATGGA 37175 >seq6823 Length=23986 Score = 78.8 bits (86), Expect = 1e-12 Identities = 81/104 (78%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTAC 66 || ||||||||||| ||||| ||| | ||||| |||||| | || ||| | || Sbjct 109 ACGTTTACTTTGAACAAATTTGAGTGCTCAAACCAGGCCGATGTCGCCTGAAAAGTTTTG 50 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||||||||| ||||||||| | ||||||||||| || ||||| Sbjct 49 CATGGAATAATGGAATAGGAC-TTCGGTTCTATTTCGTTGGTTT 7 >seq6494 Length=25048 Score = 73.4 bits (80), Expect = 4e-11 Identities = 105/145 (72%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 7 AGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC---GAATACAT 63 || || |||||||| || ||||| ||| | ||||| |||||| || | ||| | Sbjct 24254 AGCACGTTTACTTTTAACAAATTTGAGTGCTCAAACCAGGCCGATGTTACCTGAAACGTT 24313 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123 | ||| ||||||| ||||||||| | |||||||||||||| ||||| | || | | Sbjct 24314 TTGCATAGAATAATTGAATAGGACTT-CGGTTCTATTTTGTTGGTTTTT--GATCCGAAG 24370 Query 124 TAATGATAAATACGGATAGTCGGGG 148 ||||||| || | || || ||||| Sbjct 24371 TAATGATCAAGAGAGACAGGCGGGG 24395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511718381120