Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09-
25] 56,778 sequences; 539,424,504 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq3270 87.8 3e-15
seq9102 86.0 1e-14
seq12250 82.4 1e-13
seq6452 80.6 4e-13
seq15492 77.0 5e-12
>seq3270
Length=40275
Score = 87.8 bits (96), Expect = 3e-15
Identities = 94/122 (77%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| || | ||| || | | || |
Sbjct 26125 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGAGCGGCCAAT 26068
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||||||| |||||| | ||||||||||||||||| |||||| |||
Sbjct 26067 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 26008
Query 121 GA 122
||
Sbjct 26007 GA 26006
>seq9102
Length=17868
Score = 86.0 bits (94), Expect = 1e-14
Identities = 93/121 (77%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61
||||||||||||| ||| |||||| | ||||| || | ||| || | | || ||
Sbjct 1403 TACGAGAGGAACCACGGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGAGCGGCCAATG 1346
Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121
|||||||||||||||| |||||| | ||||||||||||||||| |||||| ||||
Sbjct 1345 GTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAG 1286
Query 122 A 122
|
Sbjct 1285 A 1285
>seq12250
Length=12257
Score = 82.4 bits (90), Expect = 1e-13
Identities = 93/122 (76%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||||| |||||| | |||| || ||| | || | | || |
Sbjct 11840 GTACGAGAGGAACCGCGGG-TTCAGAC-ATTTGGAACATGTACCTGGCCGAGCGGTCAAT 11897
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||||||| |||||| | |||||||| |||||||| |||||| |||
Sbjct 11898 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCTTCTAAGTCTGAATCCCGTCCA 11957
Query 121 GA 122
||
Sbjct 11958 GA 11959
Score = 78.8 bits (86), Expect = 2e-12
Identities = 92/122 (75%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||| ||||||||| | | ||| | ||||| || | ||| || | | || |
Sbjct 2910 GTACGACAGGAACCGCAGGGTA-AGAC-ATTTGGTCCATGTGTCTGGTCGAGCGGCCAAT 2967
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||||||| ||||||| | ||||||||||||||||| |||||| |||
Sbjct 2968 GGTGCGAAGCTACCATCTGATGGATTAAGACTGAACGCCTCTAAGTCTGAATCCTGTCCA 3027
Query 121 GA 122
||
Sbjct 3028 GA 3029
>seq6452
Length=25202
Score = 80.6 bits (88), Expect = 4e-13
Identities = 87/113 (77%), Gaps = 2/113 (2%)
Strand=Plus/Minus
Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61
||||||||||||| ||| |||||| | ||||| || | ||| || | | || ||
Sbjct 11573 TACGAGAGGAACCACGGG-TTCAGAC-ATTTGGTGCATGTGCCTGGTCGAGCGGCCAATG 11516
Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
|||||||||||||||| |||||| | |||||||||||| |||| ||||||
Sbjct 11515 GTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTTAGTCTGAATCC 11463
>seq15492
Length=8546
Score = 77.0 bits (84), Expect = 5e-12
Identities = 91/121 (75%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61
||||||||||||| ||| |||||| | ||||| || | ||| || | | || |
Sbjct 3193 TACGAGAGGAACCACGGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGAGCGGCCAATT 3136
Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121
|||||||||||||||| |||||| | |||||||||||| |||| |||||| ||||
Sbjct 3135 GTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTTAGTCTGAATCCCGTCCAG 3076
Query 122 A 122
|
Sbjct 3075 A 3075
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 818749409792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |