Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq3270 87.8 3e-15 seq9102 86.0 1e-14 seq12250 82.4 1e-13 seq6452 80.6 4e-13 seq15492 77.0 5e-12 >seq3270 Length=40275 Score = 87.8 bits (96), Expect = 3e-15 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | ||| || | | || | Sbjct 26125 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGAGCGGCCAAT 26068 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 26067 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 26008 Query 121 GA 122 || Sbjct 26007 GA 26006 >seq9102 Length=17868 Score = 86.0 bits (94), Expect = 1e-14 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 ||||||||||||| ||| |||||| | ||||| || | ||| || | | || || Sbjct 1403 TACGAGAGGAACCACGGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGAGCGGCCAATG 1346 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 |||||||||||||||| |||||| | ||||||||||||||||| |||||| |||| Sbjct 1345 GTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAG 1286 Query 122 A 122 | Sbjct 1285 A 1285 >seq12250 Length=12257 Score = 82.4 bits (90), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| | |||| || ||| | || | | || | Sbjct 11840 GTACGAGAGGAACCGCGGG-TTCAGAC-ATTTGGAACATGTACCTGGCCGAGCGGTCAAT 11897 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||| | |||||||| |||||||| |||||| ||| Sbjct 11898 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCTTCTAAGTCTGAATCCCGTCCA 11957 Query 121 GA 122 || Sbjct 11958 GA 11959 Score = 78.8 bits (86), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||| ||||||||| | | ||| | ||||| || | ||| || | | || | Sbjct 2910 GTACGACAGGAACCGCAGGGTA-AGAC-ATTTGGTCCATGTGTCTGGTCGAGCGGCCAAT 2967 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| ||||||| | ||||||||||||||||| |||||| ||| Sbjct 2968 GGTGCGAAGCTACCATCTGATGGATTAAGACTGAACGCCTCTAAGTCTGAATCCTGTCCA 3027 Query 121 GA 122 || Sbjct 3028 GA 3029 >seq6452 Length=25202 Score = 80.6 bits (88), Expect = 4e-13 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 ||||||||||||| ||| |||||| | ||||| || | ||| || | | || || Sbjct 11573 TACGAGAGGAACCACGGG-TTCAGAC-ATTTGGTGCATGTGCCTGGTCGAGCGGCCAATG 11516 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||| | |||||||||||| |||| |||||| Sbjct 11515 GTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTTAGTCTGAATCC 11463 >seq15492 Length=8546 Score = 77.0 bits (84), Expect = 5e-12 Identities = 91/121 (75%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 ||||||||||||| ||| |||||| | ||||| || | ||| || | | || | Sbjct 3193 TACGAGAGGAACCACGGG-TTCAGAC-ATTTGGTACATGTGCCTGGTCGAGCGGCCAATT 3136 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 |||||||||||||||| |||||| | |||||||||||| |||| |||||| |||| Sbjct 3135 GTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTTAGTCTGAATCCCGTCCAG 3076 Query 122 A 122 | Sbjct 3075 A 3075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818749409792