Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistocephalus_20solidus_20[genbank_20GCA_5F000951495.1_202014-09- 25] 56,778 sequences; 539,424,504 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2636 221 1e-52 seq5746 131 1e-25 seq28812 105 5e-18 >seq2636 Length=44840 Score = 221 bits (244), Expect = 1e-52 Identities = 514/780 (66%), Gaps = 34/780 (4%) Strand=Plus/Minus Query 61069 CCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACG 61128 |||||| ||||| | || || |||| | ||||| ||||||| ||||| || ||||| Sbjct 43146 CCCATCCAGTATCATGACATCTGGCAGTTTTACAAGAAGGCGGTGGCTTCATTTTGGACC 43087 Query 61129 GTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAA 61188 || ||||| || || ||| | || ||| | ||||||||| || | ||| || Sbjct 43086 GTTGAGGAAGTTGACTTGGCGAAGGACTTAGGTGACTGGGAATCCCTAAAGGACGGCGAG 43027 Query 61189 CAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAG 61248 | || |||||| | |||| | || || |||||||| ||||| || || ||||| Sbjct 43026 AAGCACTTCATTTCATATGTCCTCGCATTTTTTGCCGCGAGCGACGGAATAGTTAATGAA 42967 Query 61249 AATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGC 61308 ||| | | ||||| ||| || || || || | |||| || ||||| ||||| ||| Sbjct 42966 AATCTTGTAGAACGCTTCAGTCAAGAAGTACAGATTCCGGAAGCCCGTTGCTTCTATGGC 42907 Query 61309 TTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTAC 61368 ||||||||||| || || ||| | |||||||| ||||| | | |||||||||||||| Sbjct 42906 TTCCAGATTGCAATCGAAAATATTCACTCGGAAATGTATTCTCTCCTCATCGATACGTAT 42847 Query 61369 ATCAGGGAGCGGGCGGAACGTGAA------------------CGAT-------------T 61397 || | ||| | ||||| || || | | Sbjct 42846 ATTAAGGACCCAATCGAACGGTAATTTCTCTGGCTCTTATTTCGTTTTTAGTGACTTCCT 42787 Query 61398 GTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTG 61457 ||||||||| | | || |||| |||||| ||| || |||||||| | || || Sbjct 42786 GTTCAATGCGGTACAAACCCTACCTTGTGTGAAGAAGAAGGCTGATTGGGCACTTAAATG 42727 Query 61458 GATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGG 61517 ||| | | | | || ||| || || | | || ||||| | || ||||| Sbjct 42726 GATTGGTGACTCGAAGTCCACTTTTCCAGAGCGTCTAGTTGCCTTTGCTGCCGTAGAGGG 42667 Query 61518 TGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCC 61577 || || || || |||||||| | ||||| ||||||||||| ||||| |||||||| Sbjct 42666 GGTTTTCTTTTCCGGGTCGTTTGCGTCTATCTTCTGGTTGAAGAAGCGTGGGCTTATGCC 42607 Query 61578 CGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 || |||| ||||||||||| | ||| || || || || | || ||| ||||| Sbjct 42606 GGGATTGACATTCAGCAATGAACTAATAAGCCGTGATGAAGGGCTTCACACTGACTTTGC 42547 Query 61638 TGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGAT 61697 | | | | ||||||| | ||| | || ||||| ||||||| || | |||| Sbjct 42546 TTGTCTTTTGTTCAAACAC-ATCAG--AAACAAGCCGTCTAAGGAGCGCGTTGAAAAGAT 42490 Query 61698 TGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACT 61757 | | || || || || |||||| ||||||||| ||||||||| | || || || Sbjct 42489 TATGCGGGAAGCTGTTGACATCGAAGTGGAATTTCTTACTGACGCTCTTCCTGTGGACCT 42430 Query 61758 CATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTT 61817 || |||||||| ||| | || ||| | ||||| ||| || |||||||| ||||| || Sbjct 42429 GATTGGCATGAACTGTCGTCTTATGGCCCAGTACATTCGTTTCGTTGCCGATCGTCTCTT 42370 >seq5746 Length=27722 Score = 131 bits (144), Expect = 1e-25 Identities = 302/448 (67%), Gaps = 8/448 (2%) Strand=Plus/Plus Query 66262 TTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 ||| ||||| ||| | |||| |||||||| ||| ||| |||||| | ||| | | | Sbjct 14250 TTCGCCCCAACAATCGAATAGACCTGGACACTCGTGAGGATCCATCAGTGTCCACTTATC 14309 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 | | || || || ||||| |||| ||||| |||||||| || | ||||||||| || Sbjct 14310 GTTATCTTGCACGCGTCGCATGAATAAGTCAGGAATCCAGAGAGCCTGGAAGAGATCACG 14369 Query 66382 TGCTC--GTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTC 66438 |||| ||| |||||| ||| ||| || || || | || | |||| | |||||| Sbjct 14370 AGCTCTGGTT--TCCTCAGCGCCAGTG-TTCTTACGGAGCTCCACAAACTGCAGGATGTC 14426 Query 66439 GGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTC 66498 | ||||||||||||||||| || || || | || || ||| ||||| || || Sbjct 14427 TGGGTGCCATGGTTCCAGGTAAATTGCAAAGGCACCGGGCCGCTTGTTTCCACCCTGATC 14486 Query 66499 GACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCC 66558 ||||| || || ||||| | || |||| ||| || || | || || |||| || Sbjct 14487 AACGTACCGGGCTGTGTTGTTATAAACGCGCAGCATTGGAACCAAACCATTGGATTCTCC 14546 Query 66559 ATTGGTGCCGTCGATGGGGGATCCTCGTGC-CCGTATATCGTGAACATTCAGACCAATAC 66617 ||| || || | || | | | | ||| ||||| |||||| || ||||| || | Sbjct 14547 ATTCGTTCCCGCTATAAAAG-TACCCTTGCTTCGTATGCAGTGAACGTTTAGACCGATGC 14605 Query 66618 CACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGG 66677 |||| || | || || || ||||| | || || | ||||| |||||| Sbjct 14606 CACCAGCATTTTTTGATATAAGCGCACACTGCTTCAAAGTGTCATAAATGCCCTCAATGC 14665 Query 66678 AGTCACCCTTGATGGTCAGGAGGTAGCA 66705 |||| |||| || || |||||||| || Sbjct 14666 TGTCATCCTTCATAGTGAGGAGGTAACA 14693 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || ||||| || || || || ||||| ||||| | | || || || || || ||||| Sbjct 13930 GACGCGAGATTACAAACGGCAATCTCATCAGGCGAACTGTATTCAACTATCTCTGTGCAG 13989 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 || || ||| || || |||| || || |||||| |||||||||||| || ||| Sbjct 13990 AGGTTTGAGCATTTAATCGTTCCCAGATGTTGGTGATTAGACTTGCGATTGCACGCGTCC 14049 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGC 66183 ||||||| |||| | ||| |||| ||||| | ||| | ||||| || || Sbjct 14050 TTGTACAGCATGAAAGGATTGCCAGTCTCGATTTGCGCTTCAATAATAGC 14099 >seq28812 Length=1987 Score = 105 bits (116), Expect = 5e-18 Identities = 191/273 (70%), Gaps = 5/273 (2%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| |||| || ||| || ||||| || ||||| || || ||| | ||||| | Sbjct 1202 TACAAGAAGGTGGTGCCTTTTTT-TGGACCGTTGAGGAAGTTGACTTGGCGAAAGAATTA 1144 Query 61159 AATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTT 61217 ||||| ||| || | | || ||| | | || || ||| | |||| | || || Sbjct 1143 GGTGACTAGGAATCGCTAAAGGA-CGGCGGG-AGCACTTAATTTCATATGTCCTCGCATT 1086 Query 61218 CTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGT 61277 |||||||| ||||| || |||||||| ||| | ||||||| ||| | || || Sbjct 1085 TTTTGCCGCAAATGACGGAATAGTCAATGAAAATCTTGTGGAACGCTTCAGTAAAGAAGT 1026 Query 61278 GCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTC 61337 || | || || || ||||| ||||| |||||||||||||| || || ||| | ||||| Sbjct 1025 ACAGAT-TCCGAAGCCCGTTGCTTCTATGGCTTCCAGATTGCAATCGAAAATATTCACTC 967 Query 61338 GGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 ||||||||| | | |||||||| | ||| || Sbjct 966 GGAGATGTATTCTCTCCTCATCGACATGTATAT 934 Score = 89.7 bits (98), Expect = 4e-13 Identities = 180/265 (68%), Gaps = 3/265 (1%) Strand=Plus/Minus Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 |||||||||| |||| |||||||| || |||| ||||||||||| ||||| || | Sbjct 740 GGTTGAAGAAGCGTGATCTTATGCCGGGCTTGACATTCAGCAATGAACTGATAAGCCGTG 681 Query 61613 ACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTC 61672 | || || | || || |||||| | | || || |||| | ||| | ||| | Sbjct 680 ATGAAGGGCTTCACATGGACTTTGCTTGTCTTCTGTTAAAACAC-ATCAGA--AATAAGC 624 Query 61673 CGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTC 61732 ||| ||||||| || | ||| | || || || || |||||| ||||||| Sbjct 623 CGTATAAGGAGCGCGTTAAAAAAATTATGCGGGATGCTGTTGACATCGAAGTGGAATTTT 564 Query 61733 TGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATA 61792 ||||||||||| | || || || || |||||||| ||| | || | | | |||| | Sbjct 563 TGACTGACGCTCTTCCTGTGGATCTGATTGGCATGAACTGTCGTCTTAGGGCTCAGTTCA 504 Query 61793 TTGAATTTGTTGCCGACCGTCTGTT 61817 || || ||||||| ||||| || Sbjct 503 TTCTTTTCCTTGCCGATCGTCTCTT 479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397292890149920