Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq17409 132 7e-29 seq57422 122 1e-25 seq1495 118 2e-24 seq18913 105 1e-20 seq2191 75.2 2e-11 seq89 75.2 2e-11 seq83 75.2 2e-11 seq70 73.4 6e-11 >seq17409 Length=5445 Score = 132 bits (146), Expect = 7e-29 Identities = 170/225 (76%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| ||| || || ||||| ||||||| | Sbjct 1844 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGGCTTGCACTTACCAGGAATT-C 1787 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 ||| || | | || |||||||| | ||||| |||||| | | || || || Sbjct 1786 CTCTTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAATAGTTT 1727 Query 120 ACCCGGACCTGTC-GGCCAAGGTGATAGACTCG-TTGAATACATCAGTGTAGCGCGCGTG 177 ||| ||| || ||||| | | ||||||| ||| | | ||| |||||||| |||| Sbjct 1726 GCCCAACCCTTTCAGGCCAGGTTCCCAGACTCGCTTGCAC-CGTCATTGTAGCGCACGTG 1668 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 1667 TGGCCTCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 1624 >seq57422 Length=565 Score = 122 bits (134), Expect = 1e-25 Identities = 164/222 (74%), Gaps = 10/222 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || || || |||| ||| Sbjct 84 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTGACCGGGAA-TTC 141 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTAT---CCCCATCACGAT-GAAATTTCAAAG 116 |||||| |||| || |||||| || | || ||| ||||||| | || || Sbjct 142 CTCGTTCAAGAGGAATAATTGC---GAGCCATGAGCCCAGTCACGATGGTGATGAAGCAG 198 Query 117 ATT-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 || ||| | || ||||| | | ||||||| || | ||| |||||||| || Sbjct 199 TTTGACCAACATCTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACG 258 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 || ||||| | || |||||||||||||||||||||||||||| Sbjct 259 TGTGGCCCCGGACGTCTAAGGGCATCACAGACCTGTTATTGC 300 >seq1495 Length=31017 Score = 118 bits (130), Expect = 2e-24 Identities = 167/232 (72%), Gaps = 16/232 (7%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| |||| |||| | || ||||| ||||||| | Sbjct 3500 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTA-ATGAATTGCACTTACCAGGAATT-C 3557 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA------TGAAA---TTT 111 |||||| | | || |||||||| | ||||| |||||| ||||| || Sbjct 3558 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTN 3617 Query 112 CAAAGATTACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGC 170 | | ||| |||| | |||| |||||||||| | || |||||| Sbjct 3618 NNNNNNNNNCAC---CCTTTCGGGCCAGGTTCCCAGACTCGTTGGCACCGCCATTGTAGC 3674 Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 || |||| ||||| | |||||||||||||||||||||||||||||| ||||| Sbjct 3675 GCACGTGTGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 3725 >seq18913 Length=4889 Score = 105 bits (116), Expect = 1e-20 Identities = 166/227 (73%), Gaps = 18/227 (8%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||| ||| ||||| |||| | | |||| ||||||| | Sbjct 4109 GTACAAAGGGCAGGGACATAATCAGCGCAAGCTT-ATGAGTTACATTTACCAGGAATT-C 4052 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA---TGAAATTTCAAAGA 117 ||| || | | | |||||||| | ||| |||||| ||| | || | Sbjct 4051 CTCATTCACGGGGATTAATTGCAA------ACCCCAGTCACGAACTTGATAAAACA--GT 4000 Query 118 TTACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 || ||| ||| ||||||| |||| | |||||||||| | ||| |||||||| ||| Sbjct 3999 TTGCCCAACCCTTTCGGCCA-GGTGGTCAGACTCGTTGGCACCGTCATTGTAGCGCACGT 3941 Query 177 GCGGC-CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 | | | ||||| |||||||||||||||||||| ||||||| ||||| Sbjct 3940 GTGTCTCCAGA-CATCTAAGGGCATCACAGACGCGTTATTG-CTCAA 3896 >seq2191 Length=26383 Score = 75.2 bits (82), Expect = 2e-11 Identities = 64/78 (82%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 145 AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204 |||||| ||| | ||| |||||||| ||||||||| | |||||||| ||||||||| Sbjct 20473 AGACTCATTGGCACCGTCATTGTAGCGCATGTGCGGCCCCGGACATCTAACGGCATCACA 20414 Query 205 GACCTGTTATTGCCTCAA 222 ||| |||||||| ||||| Sbjct 20413 GACATGTTATTG-CTCAA 20397 >seq89 Length=74092 Score = 75.2 bits (82), Expect = 2e-11 Identities = 80/103 (78%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| |||||| ||| ||| || |||| ||||||| |||||||||||||| ||| Sbjct 56115 GTACAAAGGACAGGGAAGTAATCAGTGCAAGCT-GATGACTTGCGCTTACTAGGAA-TTC 56058 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 || ||| | | || |||||||| | ||| | ||||||| Sbjct 56057 CTTGTTCATGGAGAATAATTGCAAACCCCGATCTCAATCACGA 56015 >seq83 Length=75776 Score = 75.2 bits (82), Expect = 2e-11 Identities = 64/78 (82%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 145 AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204 ||||||| || | ||| |||| || |||| ||||| | |||||||||||||||||| Sbjct 16766 AGACTCGCTGGCACCGTCATTGTATTGCACGTGTGGCCCCGGACATCTAAGGGCATCACA 16707 Query 205 GACCTGTTATTGCCTCAA 222 |||||||||||| ||||| Sbjct 16706 GACCTGTTATTG-CTCAA 16690 >seq70 Length=77654 Score = 73.4 bits (80), Expect = 6e-11 Identities = 68/84 (81%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| |||||| | | ||| ||||| |||||| || ||||||||||| ||| Sbjct 40713 GTACAAAGGGCAACGACGTAATTAGCGCAAGCTT-ATGACTTGCACTTACTAGGAA-TTC 40770 Query 61 CTCGTTGAAGACCAACAATTGCAA 84 |||||| | | || |||||||| Sbjct 40771 CTCGTTCACGGGAAATAATTGCAA 40794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751561880100