Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25]
60,140 sequences; 344,202,215 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq17409 132 7e-29
seq57422 122 1e-25
seq1495 118 2e-24
seq18913 105 1e-20
seq2191 75.2 2e-11
seq89 75.2 2e-11
seq83 75.2 2e-11
seq70 73.4 6e-11
>seq17409
Length=5445
Score = 132 bits (146), Expect = 7e-29
Identities = 170/225 (76%), Gaps = 7/225 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||| ||||| ||| || || ||||| ||||||| |
Sbjct 1844 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGGCTTGCACTTACCAGGAATT-C 1787
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119
||| || | | || |||||||| | ||||| |||||| | | || || ||
Sbjct 1786 CTCTTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAATAGTTT 1727
Query 120 ACCCGGACCTGTC-GGCCAAGGTGATAGACTCG-TTGAATACATCAGTGTAGCGCGCGTG 177
||| ||| || ||||| | | ||||||| ||| | | ||| |||||||| ||||
Sbjct 1726 GCCCAACCCTTTCAGGCCAGGTTCCCAGACTCGCTTGCAC-CGTCATTGTAGCGCACGTG 1668
Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
|||| | |||||||||||||||||||||||||||||| |||||
Sbjct 1667 TGGCCTCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 1624
>seq57422
Length=565
Score = 122 bits (134), Expect = 1e-25
Identities = 164/222 (74%), Gaps = 10/222 (5%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||| ||||| |||||| || || || |||| |||
Sbjct 84 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTGACCGGGAA-TTC 141
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTAT---CCCCATCACGAT-GAAATTTCAAAG 116
|||||| |||| || |||||| || | || ||| ||||||| | || ||
Sbjct 142 CTCGTTCAAGAGGAATAATTGC---GAGCCATGAGCCCAGTCACGATGGTGATGAAGCAG 198
Query 117 ATT-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175
|| ||| | || ||||| | | ||||||| || | ||| |||||||| ||
Sbjct 199 TTTGACCAACATCTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACG 258
Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
|| ||||| | || ||||||||||||||||||||||||||||
Sbjct 259 TGTGGCCCCGGACGTCTAAGGGCATCACAGACCTGTTATTGC 300
>seq1495
Length=31017
Score = 118 bits (130), Expect = 2e-24
Identities = 167/232 (72%), Gaps = 16/232 (7%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||| |||| |||| | || ||||| ||||||| |
Sbjct 3500 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTA-ATGAATTGCACTTACCAGGAATT-C 3557
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA------TGAAA---TTT 111
|||||| | | || |||||||| | ||||| |||||| ||||| ||
Sbjct 3558 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTN 3617
Query 112 CAAAGATTACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGC 170
| | ||| |||| | |||| |||||||||| | || ||||||
Sbjct 3618 NNNNNNNNNCAC---CCTTTCGGGCCAGGTTCCCAGACTCGTTGGCACCGCCATTGTAGC 3674
Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
|| |||| ||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 3675 GCACGTGTGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 3725
>seq18913
Length=4889
Score = 105 bits (116), Expect = 1e-20
Identities = 166/227 (73%), Gaps = 18/227 (8%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||| ||| ||||| |||| | | |||| ||||||| |
Sbjct 4109 GTACAAAGGGCAGGGACATAATCAGCGCAAGCTT-ATGAGTTACATTTACCAGGAATT-C 4052
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA---TGAAATTTCAAAGA 117
||| || | | | |||||||| | ||| |||||| ||| | || |
Sbjct 4051 CTCATTCACGGGGATTAATTGCAA------ACCCCAGTCACGAACTTGATAAAACA--GT 4000
Query 118 TTACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGT 176
|| ||| ||| ||||||| |||| | |||||||||| | ||| |||||||| |||
Sbjct 3999 TTGCCCAACCCTTTCGGCCA-GGTGGTCAGACTCGTTGGCACCGTCATTGTAGCGCACGT 3941
Query 177 GCGGC-CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
| | | ||||| |||||||||||||||||||| ||||||| |||||
Sbjct 3940 GTGTCTCCAGA-CATCTAAGGGCATCACAGACGCGTTATTG-CTCAA 3896
>seq2191
Length=26383
Score = 75.2 bits (82), Expect = 2e-11
Identities = 64/78 (82%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 145 AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204
|||||| ||| | ||| |||||||| ||||||||| | |||||||| |||||||||
Sbjct 20473 AGACTCATTGGCACCGTCATTGTAGCGCATGTGCGGCCCCGGACATCTAACGGCATCACA 20414
Query 205 GACCTGTTATTGCCTCAA 222
||| |||||||| |||||
Sbjct 20413 GACATGTTATTG-CTCAA 20397
>seq89
Length=74092
Score = 75.2 bits (82), Expect = 2e-11
Identities = 80/103 (78%), Gaps = 2/103 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||| |||||| ||| ||| || |||| ||||||| |||||||||||||| |||
Sbjct 56115 GTACAAAGGACAGGGAAGTAATCAGTGCAAGCT-GATGACTTGCGCTTACTAGGAA-TTC 56058
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103
|| ||| | | || |||||||| | ||| | |||||||
Sbjct 56057 CTTGTTCATGGAGAATAATTGCAAACCCCGATCTCAATCACGA 56015
>seq83
Length=75776
Score = 75.2 bits (82), Expect = 2e-11
Identities = 64/78 (82%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 145 AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204
||||||| || | ||| |||| || |||| ||||| | ||||||||||||||||||
Sbjct 16766 AGACTCGCTGGCACCGTCATTGTATTGCACGTGTGGCCCCGGACATCTAAGGGCATCACA 16707
Query 205 GACCTGTTATTGCCTCAA 222
|||||||||||| |||||
Sbjct 16706 GACCTGTTATTG-CTCAA 16690
>seq70
Length=77654
Score = 73.4 bits (80), Expect = 6e-11
Identities = 68/84 (81%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||| |||||| | | ||| ||||| |||||| || ||||||||||| |||
Sbjct 40713 GTACAAAGGGCAACGACGTAATTAGCGCAAGCTT-ATGACTTGCACTTACTAGGAA-TTC 40770
Query 61 CTCGTTGAAGACCAACAATTGCAA 84
|||||| | | || ||||||||
Sbjct 40771 CTCGTTCACGGGAAATAATTGCAA 40794
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751561880100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |