Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq59378 168 1e-39 seq70 161 2e-37 seq39755 129 1e-27 seq6438 122 2e-25 seq26252 89.7 9e-16 >seq59378 Length=519 Score = 168 bits (186), Expect = 1e-39 Identities = 200/265 (75%), Gaps = 11/265 (4%) Strand=Plus/Minus Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC---CAGGACTTTTACTTTGAAAAAATT 90 |||| ||||| || | |||||| |||||| | | | ||||||||||| ||||| Sbjct 260 TCCGGATGCCTTTAAACGGGTGTC---GGGAGCGGACGGCATCTTTACTTTGAACAAATT 204 Query 91 AGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGAC 148 ||||| ||||||||||||| ||| | ||| | | |||||||||||| |||||||| Sbjct 203 TGAGTGCTCAAAGCAGGCCTGTGCGCCTGAAAATTCTTGCATGGAATAATGAAATAGGAC 144 Query 149 GTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGG 207 | |||||||||||||||||||| | ||| ||| |||||| |||| ||||| || |||| Sbjct 143 TT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGTTAAGAGGGACAGACGGG 86 Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGC 267 || | |||| ||| |||||||||||||| |||| |||| |||||| || Sbjct 85 GGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTGGGATCGCCGCCAGACAAACTACAGC 26 Query 268 GAAAGCGTTCACCAAGGATGTTTTC 292 |||||| || ||||| |||||||| Sbjct 25 GAAAGCATTTGCCAAGAATGTTTTC 1 >seq70 Length=77654 Score = 161 bits (178), Expect = 2e-37 Identities = 189/252 (75%), Gaps = 13/252 (5%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAG------ 127 ||||||||||| ||||| ||||| ||||||||||||| ||| | | |||| Sbjct 41501 TTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTGTGCGCCTGAAAATTANNNNNNN 41442 Query 128 ---CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCG 183 ||||||||||| |||||||| | |||||||||||||||||||| | ||| ||| | Sbjct 41441 NNNCATGGAATAATGAAATAGGACTT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAG 41384 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 ||||| |||| ||||| || ||| || | ||| ||| |||||||||||||| | Sbjct 41383 TAATGGTTAAGAGGGACAGACGGAGGCATTTGTACGGCGGTGTTAGAGGTGAAATTCTGG 41324 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 ||| |||| |||||| |||||||| || ||||| ||||||||||| ||||| | Sbjct 41323 GATCGCCGCCAGACAAACTACAGCGAAAGCATTTGCCAAGAATGTTTTCATTGATCAG-G 41265 Query 304 AACGAAAGTTAG 315 | ||||||| || Sbjct 41264 AGCGAAAGTCAG 41253 >seq39755 Length=1220 Score = 129 bits (142), Expect = 1e-27 Identities = 171/234 (73%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATG 131 ||||||||||| ||||| ||||| |||||||||| |||||| | ||| | || |||| Sbjct 261 TTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGACTTTGCGCCTGAAAATTTTTTCATG 202 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 ||||||| ||||||| | | |||||||||||| |||| ||| ||| |||||| || Sbjct 201 GAATAATGACATAGGAC-TTCATTTCTATTTTGTTTGTTTTCAGGTCCGAAGTAATGGTT 143 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAA----TTGTCAGAGGTGAAATTCTTGGATT 247 || | ||| || | ||| || | | || ||| |||| | ||||||| |||| Sbjct 142 AAAACGGACAGACAAGGG---CATTTTGTAAGGTGATGTTAGAGATAAAATTCTAGGATC 86 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 | |||| |||||| |||||| | || ||||| ||||||||||| | ||| Sbjct 85 ACTGTCAGACAAACTACAGCGAAACCATTTGCCAAGAATGTTTTCATTGAACAG 32 >seq6438 Length=14192 Score = 122 bits (134), Expect = 2e-25 Identities = 158/216 (73%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 88 ATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAG 145 ||| ||||| | |||| ||| || ||| | ||| | | |||| | |||| ||||| Sbjct 2382 ATTTGAGTGCTTAAAGTAGGTCTATGCGCCTGAAAATTTCTTCATGAAGTAATGAAATAG 2441 Query 146 GACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCG 205 ||| | || |||| |||||||||||| | | ||| |||||| |||| || || || || Sbjct 2442 GACTT-CGCTTCTGTTTTGTTGGTTTTTCGATCCGAAGTAATGGTTAAGAGAGACAGACG 2500 Query 206 GGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACT 265 || | | |||| | ||| |||||||||||||| |||| | |||| |||||| Sbjct 2501 GGAGCATTTGTATGGCAGTGTTAGAGGTGAAATTCTGGGATCAACGCCAGACAAACTACA 2560 Query 266 GCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 ||||||||| | |||||| ||||||| ||| ||||| Sbjct 2561 GCGAAAGCGCTTACCAAGAATGTTTTAATTGATCAG 2596 >seq26252 Length=2951 Score = 89.7 bits (98), Expect = 9e-16 Identities = 153/219 (70%), Gaps = 10/219 (5%) Strand=Plus/Minus Query 89 TTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAG--CATGGAATAATAGAATAGG 146 || ||||| ||||||||| |||||| | | | ||| ||||||||||| ||||| Sbjct 2375 TTTGAGTGCCCAAAGCAGGACTTTGCGCCTAAAAATTCTTTCATGGAATAATGACATAGG 2316 Query 147 ACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGG 206 || | | |||||||||||| |||| ||| ||| |||| | ||| | ||| || | Sbjct 2315 ACTT-CATTTCTATTTTGTTTGTTTTCAGGTCCGAAGTAACGGTTAGGACGGACAGACAA 2257 Query 207 GGGTGTCAGTATTCAAT----TGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACT 262 ||| || | | || ||| |||| ||||||||| |||| | |||| |||| Sbjct 2256 GGG---CATTTTGTAAGGTGATGTTAGAGATGAAATTCTAGGATCACTGTCAGACAAACT 2200 Query 263 ACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 | |||||| | || ||||| ||||||||||| | ||| Sbjct 2199 ATAGCGAAACCATTTGCCAAGAATGTTTTCATTGAACAG 2161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914649598720