Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25]
60,140 sequences; 344,202,215 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq59378 168 1e-39
seq70 161 2e-37
seq39755 129 1e-27
seq6438 122 2e-25
seq26252 89.7 9e-16
>seq59378
Length=519
Score = 168 bits (186), Expect = 1e-39
Identities = 200/265 (75%), Gaps = 11/265 (4%)
Strand=Plus/Minus
Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC---CAGGACTTTTACTTTGAAAAAATT 90
|||| ||||| || | |||||| |||||| | | | ||||||||||| |||||
Sbjct 260 TCCGGATGCCTTTAAACGGGTGTC---GGGAGCGGACGGCATCTTTACTTTGAACAAATT 204
Query 91 AGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGAC 148
||||| ||||||||||||| ||| | ||| | | |||||||||||| ||||||||
Sbjct 203 TGAGTGCTCAAAGCAGGCCTGTGCGCCTGAAAATTCTTGCATGGAATAATGAAATAGGAC 144
Query 149 GTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGG 207
| |||||||||||||||||||| | ||| ||| |||||| |||| ||||| || ||||
Sbjct 143 TT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGTTAAGAGGGACAGACGGG 86
Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGC 267
|| | |||| ||| |||||||||||||| |||| |||| |||||| ||
Sbjct 85 GGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTGGGATCGCCGCCAGACAAACTACAGC 26
Query 268 GAAAGCGTTCACCAAGGATGTTTTC 292
|||||| || ||||| ||||||||
Sbjct 25 GAAAGCATTTGCCAAGAATGTTTTC 1
>seq70
Length=77654
Score = 161 bits (178), Expect = 2e-37
Identities = 189/252 (75%), Gaps = 13/252 (5%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAG------ 127
||||||||||| ||||| ||||| ||||||||||||| ||| | | ||||
Sbjct 41501 TTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTGTGCGCCTGAAAATTANNNNNNN 41442
Query 128 ---CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCG 183
||||||||||| |||||||| | |||||||||||||||||||| | ||| ||| |
Sbjct 41441 NNNCATGGAATAATGAAATAGGACTT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAG 41384
Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243
||||| |||| ||||| || ||| || | ||| ||| |||||||||||||| |
Sbjct 41383 TAATGGTTAAGAGGGACAGACGGAGGCATTTGTACGGCGGTGTTAGAGGTGAAATTCTGG 41324
Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303
||| |||| |||||| |||||||| || ||||| ||||||||||| ||||| |
Sbjct 41323 GATCGCCGCCAGACAAACTACAGCGAAAGCATTTGCCAAGAATGTTTTCATTGATCAG-G 41265
Query 304 AACGAAAGTTAG 315
| ||||||| ||
Sbjct 41264 AGCGAAAGTCAG 41253
>seq39755
Length=1220
Score = 129 bits (142), Expect = 1e-27
Identities = 171/234 (73%), Gaps = 10/234 (4%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATG 131
||||||||||| ||||| ||||| |||||||||| |||||| | ||| | || ||||
Sbjct 261 TTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGACTTTGCGCCTGAAAATTTTTTCATG 202
Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191
||||||| ||||||| | | |||||||||||| |||| ||| ||| |||||| ||
Sbjct 201 GAATAATGACATAGGAC-TTCATTTCTATTTTGTTTGTTTTCAGGTCCGAAGTAATGGTT 143
Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAA----TTGTCAGAGGTGAAATTCTTGGATT 247
|| | ||| || | ||| || | | || ||| |||| | ||||||| ||||
Sbjct 142 AAAACGGACAGACAAGGG---CATTTTGTAAGGTGATGTTAGAGATAAAATTCTAGGATC 86
Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301
| |||| |||||| |||||| | || ||||| ||||||||||| | |||
Sbjct 85 ACTGTCAGACAAACTACAGCGAAACCATTTGCCAAGAATGTTTTCATTGAACAG 32
>seq6438
Length=14192
Score = 122 bits (134), Expect = 2e-25
Identities = 158/216 (73%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 88 ATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAG 145
||| ||||| | |||| ||| || ||| | ||| | | |||| | |||| |||||
Sbjct 2382 ATTTGAGTGCTTAAAGTAGGTCTATGCGCCTGAAAATTTCTTCATGAAGTAATGAAATAG 2441
Query 146 GACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCG 205
||| | || |||| |||||||||||| | | ||| |||||| |||| || || || ||
Sbjct 2442 GACTT-CGCTTCTGTTTTGTTGGTTTTTCGATCCGAAGTAATGGTTAAGAGAGACAGACG 2500
Query 206 GGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACT 265
|| | | |||| | ||| |||||||||||||| |||| | |||| ||||||
Sbjct 2501 GGAGCATTTGTATGGCAGTGTTAGAGGTGAAATTCTGGGATCAACGCCAGACAAACTACA 2560
Query 266 GCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301
||||||||| | |||||| ||||||| ||| |||||
Sbjct 2561 GCGAAAGCGCTTACCAAGAATGTTTTAATTGATCAG 2596
>seq26252
Length=2951
Score = 89.7 bits (98), Expect = 9e-16
Identities = 153/219 (70%), Gaps = 10/219 (5%)
Strand=Plus/Minus
Query 89 TTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAG--CATGGAATAATAGAATAGG 146
|| ||||| ||||||||| |||||| | | | ||| ||||||||||| |||||
Sbjct 2375 TTTGAGTGCCCAAAGCAGGACTTTGCGCCTAAAAATTCTTTCATGGAATAATGACATAGG 2316
Query 147 ACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGG 206
|| | | |||||||||||| |||| ||| ||| |||| | ||| | ||| || |
Sbjct 2315 ACTT-CATTTCTATTTTGTTTGTTTTCAGGTCCGAAGTAACGGTTAGGACGGACAGACAA 2257
Query 207 GGGTGTCAGTATTCAAT----TGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACT 262
||| || | | || ||| |||| ||||||||| |||| | |||| ||||
Sbjct 2256 GGG---CATTTTGTAAGGTGATGTTAGAGATGAAATTCTAGGATCACTGTCAGACAAACT 2200
Query 263 ACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301
| |||||| | || ||||| ||||||||||| | |||
Sbjct 2199 ATAGCGAAACCATTTGCCAAGAATGTTTTCATTGAACAG 2161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914649598720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |