Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq47923 131 7e-28 seq1451 127 9e-27 seq44242 107 8e-21 seq8343 98.7 4e-18 >seq47923 Length=797 Score = 131 bits (144), Expect = 7e-28 Identities = 110/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || |||| |||||||||||||||||||||||| || || ||||| Sbjct 197 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAGGGTTGAAG 256 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||| | || |||| ||||| ||||||||| | |||| || Sbjct 257 CCAGAGGAAACTCTGGTGGACGACCGTAGCGATTCTGACGTGCAAATTGGTCGTATAACG 316 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 317 TGAGTATAGGGGCGA 331 >seq1451 Length=31518 Score = 127 bits (140), Expect = 9e-27 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || |||| |||||||| ||| ||||| ||||| || ||| ||||| Sbjct 9328 GAGCAAGAGCGTACACGTTGAGACCCGAACGATAGTGAAATATGCTTGTGAAGGTTGAAG 9387 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || ||| ||||| |||||||||||||||| || Sbjct 9388 CCAGAGGAAACTCTGGTGGAGGACCGTAGCAATTCTGACGTGCAAATCGATCGTATAACG 9447 Query 669 TGGGTATAGGGGCGA 683 || | |||||||||| Sbjct 9448 TGAGCATAGGGGCGA 9462 >seq44242 Length=949 Score = 107 bits (118), Expect = 8e-21 Identities = 105/135 (78%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| || ||| || |||| ||||||||||||||||||||||||||| ||| | ||| Sbjct 280 GAGCAAAAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCCTGTGAAGGTTAAAG 339 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||| ||||||||| ||||| ||||| | | ||| ||| |||||| ||||| || Sbjct 340 CCAGTGGAAACTCTAGTGGA---CCGCAGTGATCCTGACGTACAAATCAATCGTATAAGG 396 Query 669 TGGGTATAGGGGCGA 683 || |||||| ||||| Sbjct 397 TGAGTATAGAGGCGA 411 >seq8343 Length=11663 Score = 98.7 bits (108), Expect = 4e-18 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 |||||||||| || ||| ||||||||||||||||| | |||| || ||| ||||| Sbjct 10333 GAGTAAGAGCGTATACATTGAGACCCGAAAGATGGTGAGCCATGCTTGCGAAGGTTGAAG 10274 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||||||| |||||| ||||||| || || | |||| ||||||||| ||||| || Sbjct 10273 CCAGAGGTAACTCTAGTGGAGGGCCGTAGTGATTCTCACGTGCAAATAAATCGTATAACG 10214 Query 669 TGGGTAT 675 || |||| Sbjct 10213 TGAGTAT 10207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078709997000