Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq57422 190 3e-46 seq1495 178 2e-42 seq70 176 7e-42 seq83 125 1e-26 seq17409 118 2e-24 seq1458 114 2e-23 seq6438 111 3e-22 seq89 104 4e-20 seq18913 96.9 6e-18 seq15782 96.9 6e-18 seq7498 89.7 8e-16 seq13426 87.8 3e-15 seq2191 84.2 3e-14 seq32503 80.6 4e-13 seq16722 78.8 1e-12 >seq57422 Length=565 Score = 190 bits (210), Expect = 3e-46 Identities = 214/282 (76%), Gaps = 26/282 (9%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| |||||||| |||| ||||| | || ||||||||||||||||| Sbjct 230 ACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACGTCTAAGGGCATCACAGA 289 Query 62 CCTGTTATTGCCTCAAACTT---CCA-TTGGCTGG---AAGCCAATAGTCCCTCT--AAG 112 ||||||||||| || | || | | || ||| | | | | | | || | ||| Sbjct 290 CCTGTTATTGC-TCGATCTCGTGCGACTTAACTGTGCCACGACCACACTACCCCATAAAG 348 Query 113 AAGCCA-----GCCAC--------CAACCATAGTCGATGGGGCTA---TTTAGCAGGTTA 156 |||| | ||| | | | || || || | ||| |||||||||||| Sbjct 349 AAGCAATAGAAGCCGCGCTCTAAGCGAGCACAGAGGACCAGTCTACTATTTAGCAGGTTA 408 Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 | |||||||| |||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 409 AAGTCTCGTTTGTTATCGGAATTAACCAGACAAATTGCTCCACAAACTAAGAACGGCCAT 468 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| |||||||||| |||||||||||||||| Sbjct 469 GCACCACCACCCACCGAATCAAGAATGAGCTATCAATCTGTC 510 >seq1495 Length=31017 Score = 178 bits (196), Expect = 2e-42 Identities = 107/113 (95%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| Sbjct 3861 CTATTTAGCAGGTTAAAGTCTCGTTCGTCATCGGAATTAACCAGACAAATCGCTCCACCA 3920 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 |||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 3921 ACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTGTCAATC 3973 Score = 93.3 bits (102), Expect = 7e-17 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| ||| || |||||||| |||| ||||| | |||||||||||||||||||| Sbjct 3651 ACTCGTTGGCACCGCCATTGTAGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACAGA 3710 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 3711 CCTGTTATTG-CTCAA 3725 >seq70 Length=77654 Score = 176 bits (194), Expect = 7e-42 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 40886 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 40945 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| ||||||||||||| |||| |||||||||||||| |||||||| ||| Sbjct 40946 ACTAAGAACTGCCATGCACCACCGCCCACCGAATCAAGAAAGAGATATCAATCCGTC 41002 >seq83 Length=75776 Score = 125 bits (138), Expect = 1e-26 Identities = 72/74 (97%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 16554 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 16495 Query 202 ACTAAGAACGGCCA 215 |||||||||||||| Sbjct 16494 ACTAAGAACGGCCA 16481 Score = 89.7 bits (98), Expect = 8e-16 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| |||| || |||| ||||| | |||||||||||||||||||| Sbjct 16764 ACTCGCTGGCACCGTCATTGTATTGCACGTGTGGCCCCGGACATCTAAGGGCATCACAGA 16705 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 16704 CCTGTTATTG-CTCAA 16690 >seq17409 Length=5445 Score = 118 bits (130), Expect = 2e-24 Identities = 71/75 (95%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||| Sbjct 1488 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCTGAATTAACCAGACAAATCGCTCCACCA 1429 Query 202 ACTAAGAACGGCCAT 216 |||||||||||| || Sbjct 1428 ACTAAGAACGGCTAT 1414 Score = 89.7 bits (98), Expect = 8e-16 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| | || |||||| |||||||| |||| |||| | |||||||||||||||||||| Sbjct 1698 ACTCGCTTGCACCGTCATTGTAGCGCACGTGTGGCCTCGGACATCTAAGGGCATCACAGA 1639 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 1638 CCTGTTATTG-CTCAA 1624 >seq1458 Length=31436 Score = 114 bits (126), Expect = 2e-23 Identities = 78/88 (89%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 170 TATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 ||||||| ||||||||| ||| ||||||||||||||||||||||||||||| |||||| Sbjct 23584 TATCGGAGTTAACCAGAAGAATTTCTCCACCAACTAAGAACGGCCATGCACCATCACCCA 23525 Query 230 TAGAATCAAGAAAGAGCTATCAATCTGT 257 |||||| |||||| |||||||||||| Sbjct 23524 CCGAATCAGGAAAGAACTATCAATCTGT 23497 >seq6438 Length=14192 Score = 111 bits (122), Expect = 3e-22 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 168 GTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 227 ||||||||||||||||||||||||| || ||| ||||||||| ||| ||||||| ||| | Sbjct 2930 GTTATCGGAATTAACCAGACAAATCGCTACACTAACTAAGAATGGCTATGCACCGCCATC 2871 Query 228 CATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||||| ||||||||||||||| |||| Sbjct 2870 CACTGAATCGGGAAAGAGCTATCAATTTGTC 2840 >seq89 Length=74092 Score = 104 bits (114), Expect = 4e-20 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| ||||| | |||||||||||||||| |||||||| |||||||| |||||||| Sbjct 55854 CTATTTAGGAGGTTTAAGTCTCGTTCGTTATCGAAATTAACCGGACAAATCGCTCCACCA 55795 Query 202 ACTAAGAACGGCCAT 216 |||||||||||| || Sbjct 55794 ACTAAGAACGGCTAT 55780 >seq18913 Length=4889 Score = 96.9 bits (106), Expect = 6e-18 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTT-AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 ||||||| |||||| ||| ||| ||| || ||||||||||||||||||| || ||||||| Sbjct 3761 CTATTTATCAGGTTGAAGTTCTTGTTTGTCATCGGAATTAACCAGACAAGTCGCTCCACC 3702 Query 201 AACTAAGAACGGCCATGC 218 |||||| ||||||||||| Sbjct 3701 AACTAAAAACGGCCATGC 3684 Score = 78.8 bits (86), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 3/77 (4%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGC-CCAGAACATCTAAGGGCATCACAG 60 ||||| |||| |||||| |||||||| |||| | | ||||| |||||||||||||||||| Sbjct 3970 ACTCGTTGGCACCGTCATTGTAGCGCACGTGTGTCTCCAGA-CATCTAAGGGCATCACAG 3912 Query 61 ACCTGTTATTGCCTCAA 77 || ||||||| ||||| Sbjct 3911 ACGCGTTATTG-CTCAA 3896 >seq15782 Length=6152 Score = 96.9 bits (106), Expect = 6e-18 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 |||||||||| | ||||||| || ||||||| |||||||| || |||||||||| | Sbjct 3560 ATCGGAATTACCTGGACAAATTGCTGCACCAACAAAGAACGGTTATACACCACCACCGAC 3501 Query 231 AGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||| |||||||||||| Sbjct 3500 CGAATCAAGAAAGAGGTATCAATCTGTC 3473 >seq7498 Length=12697 Score = 89.7 bits (98), Expect = 8e-16 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 |||||||||| |||| |||||||| |||| ||||| ||||||||| |||||| |||||| Sbjct 4522 TATTTAGCAGTTTAAAGTCTCGTTGGTTACCGGAACTAACCAGACGAATCACCTCACCAA 4581 Query 203 CTAAGAACG 211 ||||||||| Sbjct 4582 CTAAGAACG 4590 >seq13426 Length=7388 Score = 87.8 bits (96), Expect = 3e-15 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||| ||| ||| | |||| ||||||| ||||| |||||||| Sbjct 3286 CTATTTAGCAGGTTAAAGTCTTGTTTGTTGTTAGAATCAACCAGATAAATCGCTCCACCA 3227 Query 202 ACTAAGAACGGCCATGCA 219 ||||| || |||||| || Sbjct 3226 ACTAAAAATGGCCATCCA 3209 >seq2191 Length=26383 Score = 84.2 bits (92), Expect = 3e-14 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 |||| |||| |||||| |||||||| ||||||||| | |||||||| ||||||||||| Sbjct 20471 ACTCATTGGCACCGTCATTGTAGCGCATGTGCGGCCCCGGACATCTAACGGCATCACAGA 20412 Query 62 CCTGTTATTGCCTCAA 77 | |||||||| ||||| Sbjct 20411 CATGTTATTG-CTCAA 20397 >seq32503 Length=1934 Score = 80.6 bits (88), Expect = 4e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 144 ATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAAC 203 |||||| |||| || ||||| ||||||||||||||||||| ||| ||||| ||||||| Sbjct 614 ATTTAGGAGGTCAACGTCTCATTCGTTATCGGAATTAACCCGACCAATCATCTCACCAAC 555 Query 204 TAAGAACGGCCATG 217 ||||| || |||| Sbjct 554 TAAGAGCGATCATG 541 >seq16722 Length=5726 Score = 78.8 bits (86), Expect = 1e-12 Identities = 59/68 (87%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 150 CAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAA 209 ||| | || |||||||| |||||| |||||||||||||||||||| | | ||||||||| Sbjct 3087 CAGATCAACGTCTCGTTTGTTATCAGAATTAACCAGACAAATCAC-CTTCAAACTAAGAA 3145 Query 210 CGGCCATG 217 |||||||| Sbjct 3146 CGGCCATG 3153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796335779340