Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25]
60,140 sequences; 344,202,215 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq4724 190 3e-46
seq132 183 5e-44
seq8069 150 3e-34
seq26858 147 4e-33
seq6171 127 3e-27
seq37417 123 4e-26
seq24285 122 1e-25
seq425 95.1 2e-17
seq42980 78.8 2e-12
seq3179 77.0 6e-12
>seq4724
Length=17526
Score = 190 bits (210), Expect = 3e-46
Identities = 117/125 (94%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1477 TCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 1536
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1537 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 1596
Query 151 CATCG 155
|||||
Sbjct 1597 CATCG 1601
>seq132
Length=66925
Score = 183 bits (202), Expect = 5e-44
Identities = 137/161 (85%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| ||||||||||||||||||||||||| | |||||||| | ||||| |||||
Sbjct 21649 TCATTAGTAGGGTAAAACTAACCTGTCTCACGGTGGTCTAAATTTAACTCACTTTCCCCG 21590
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||||||||| |||||| ||||| || |||| ||||||| |
Sbjct 21589 TTAGTGGGTGAACAATCCAACGCTTGATGAATTCCGCTTCACAATAATAGAAAGAGCCAA 21530
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGC 191
|||| |||||| ||||||| |||||||||||||||||||||
Sbjct 21529 CATCAAAGGATTAAAAAGCGACGTCGCTATGAACGCTTGGC 21489
>seq8069
Length=12006
Score = 150 bits (166), Expect = 3e-34
Identities = 113/133 (85%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| |||| ||||||||||||| |||||| | ||||||||||||| | ||||||||||
Sbjct 2452 TCATTAGTAAGGTAAAACTAACCGGTCTCACAATGGTCTAAACCCAGTTTACGTTCCCTA 2393
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||||| || |||||||||||| || ||| ||| ||||||
Sbjct 2392 TTAGTGGGTGAACAATCCAACATTTGGTGAATTCTGCTTCACAATAATAAGAATAGCCGA 2333
Query 151 CATCGAAGGATCA 163
||||||||||||
Sbjct 2332 TATCGAAGGATCA 2320
>seq26858
Length=2836
Score = 147 bits (162), Expect = 4e-33
Identities = 110/129 (85%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| | || ||||||||||||||||||||||||||||||| ||||||||| |||||| |
Sbjct 202 TCATTATTAAGGTAAAACTAACCTGTCTCATGACGGTCTAAGCCCAGCTCATGTTCCCAA 261
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||| | ||||| ||| |||||||||||| |||| ||||||||| |
Sbjct 262 TTAGTGGGTGAACGAACCAACACTTGGTGAATTCTGCTTCACAGTGATTGGAAGAGCCTA 321
Query 151 CATCGAAGG 159
||||||||
Sbjct 322 TATCGAAGG 330
>seq6171
Length=14623
Score = 127 bits (140), Expect = 3e-27
Identities = 79/85 (93%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| ||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||
Sbjct 1367 TCATTAGTAGGGTAAAACTAACTTGTCTCACGACGGTCTAAACCCAGCTCATGTTCCCTA 1308
Query 91 TTAGTGGGTGAACAATCCAACGCTT 115
|||||| |||||||||||||||||
Sbjct 1307 TTAGTGAATGAACAATCCAACGCTT 1283
>seq37417
Length=1414
Score = 123 bits (136), Expect = 4e-26
Identities = 74/78 (95%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 50 AACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCA 109
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 AACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCA 248
Query 110 ACGCTTACCGAATTCTGC 127
|||||| |||||||||
Sbjct 249 ACGCTTGGTGAATTCTGC 266
>seq24285
Length=3370
Score = 122 bits (134), Expect = 1e-25
Identities = 70/72 (97%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 146 GCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 205
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1 GCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGT 60
Query 206 TATCCCTGTGGT 217
||||||||||||
Sbjct 61 TATCCCTGTGGT 72
>seq425
Length=49384
Score = 95.1 bits (104), Expect = 2e-17
Identities = 63/70 (90%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198
|||||||||||| |||||||||||||| ||| | ||||||||||| |||||||| ||| |
Sbjct 47863 AGGAAGAGCCGATATCGAAGGATCAAATAGCGATGTCGCTATGAATGCTTGGCTACCATA 47922
Query 199 AGCCAGTTAT 208
||||||||||
Sbjct 47923 AGCCAGTTAT 47932
>seq42980
Length=1021
Score = 78.8 bits (86), Expect = 2e-12
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217
|||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 CGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGT 46
>seq3179
Length=21921
Score = 77.0 bits (84), Expect = 6e-12
Identities = 85/112 (76%), Gaps = 1/112 (1%)
Strand=Plus/Minus
Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165
||| ||||||| ||| | || ||| ||||| | | ||| ||||| || || |||
Sbjct 9004 TCCGACGCTTATTGAACTATGTTTCACAATGATGGTTATTGCCAACATCAAAAAATTAAA 8945
Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217
|| | ||||||| | |||||||||| ||||||||||||||| | |||||||
Sbjct 8944 AA-CGACGTCGCCAAGAACGCTTGGTAGCCACAAGCCAGTTACCACTGTGGT 8894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 853886163840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |