Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq4724 190 3e-46 seq132 183 5e-44 seq8069 150 3e-34 seq26858 147 4e-33 seq6171 127 3e-27 seq37417 123 4e-26 seq24285 122 1e-25 seq425 95.1 2e-17 seq42980 78.8 2e-12 seq3179 77.0 6e-12 >seq4724 Length=17526 Score = 190 bits (210), Expect = 3e-46 Identities = 117/125 (94%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1477 TCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 1536 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 1537 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 1596 Query 151 CATCG 155 ||||| Sbjct 1597 CATCG 1601 >seq132 Length=66925 Score = 183 bits (202), Expect = 5e-44 Identities = 137/161 (85%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||||||||||||||||||||||| | |||||||| | ||||| ||||| Sbjct 21649 TCATTAGTAGGGTAAAACTAACCTGTCTCACGGTGGTCTAAATTTAACTCACTTTCCCCG 21590 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||| ||||| || |||| ||||||| | Sbjct 21589 TTAGTGGGTGAACAATCCAACGCTTGATGAATTCCGCTTCACAATAATAGAAAGAGCCAA 21530 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGC 191 |||| |||||| ||||||| ||||||||||||||||||||| Sbjct 21529 CATCAAAGGATTAAAAAGCGACGTCGCTATGAACGCTTGGC 21489 >seq8069 Length=12006 Score = 150 bits (166), Expect = 3e-34 Identities = 113/133 (85%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| |||| ||||||||||||| |||||| | ||||||||||||| | |||||||||| Sbjct 2452 TCATTAGTAAGGTAAAACTAACCGGTCTCACAATGGTCTAAACCCAGTTTACGTTCCCTA 2393 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| || |||||||||||| || ||| ||| |||||| Sbjct 2392 TTAGTGGGTGAACAATCCAACATTTGGTGAATTCTGCTTCACAATAATAAGAATAGCCGA 2333 Query 151 CATCGAAGGATCA 163 |||||||||||| Sbjct 2332 TATCGAAGGATCA 2320 >seq26858 Length=2836 Score = 147 bits (162), Expect = 4e-33 Identities = 110/129 (85%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| | || ||||||||||||||||||||||||||||||| ||||||||| |||||| | Sbjct 202 TCATTATTAAGGTAAAACTAACCTGTCTCATGACGGTCTAAGCCCAGCTCATGTTCCCAA 261 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||| | ||||| ||| |||||||||||| |||| ||||||||| | Sbjct 262 TTAGTGGGTGAACGAACCAACACTTGGTGAATTCTGCTTCACAGTGATTGGAAGAGCCTA 321 Query 151 CATCGAAGG 159 |||||||| Sbjct 322 TATCGAAGG 330 >seq6171 Length=14623 Score = 127 bits (140), Expect = 3e-27 Identities = 79/85 (93%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| Sbjct 1367 TCATTAGTAGGGTAAAACTAACTTGTCTCACGACGGTCTAAACCCAGCTCATGTTCCCTA 1308 Query 91 TTAGTGGGTGAACAATCCAACGCTT 115 |||||| ||||||||||||||||| Sbjct 1307 TTAGTGAATGAACAATCCAACGCTT 1283 >seq37417 Length=1414 Score = 123 bits (136), Expect = 4e-26 Identities = 74/78 (95%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 50 AACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCA 109 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 189 AACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCA 248 Query 110 ACGCTTACCGAATTCTGC 127 |||||| ||||||||| Sbjct 249 ACGCTTGGTGAATTCTGC 266 >seq24285 Length=3370 Score = 122 bits (134), Expect = 1e-25 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 146 GCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 205 |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1 GCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGT 60 Query 206 TATCCCTGTGGT 217 |||||||||||| Sbjct 61 TATCCCTGTGGT 72 >seq425 Length=49384 Score = 95.1 bits (104), Expect = 2e-17 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198 |||||||||||| |||||||||||||| ||| | ||||||||||| |||||||| ||| | Sbjct 47863 AGGAAGAGCCGATATCGAAGGATCAAATAGCGATGTCGCTATGAATGCTTGGCTACCATA 47922 Query 199 AGCCAGTTAT 208 |||||||||| Sbjct 47923 AGCCAGTTAT 47932 >seq42980 Length=1021 Score = 78.8 bits (86), Expect = 2e-12 Identities = 45/46 (98%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217 |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 CGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGT 46 >seq3179 Length=21921 Score = 77.0 bits (84), Expect = 6e-12 Identities = 85/112 (76%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 ||| ||||||| ||| | || ||| ||||| | | ||| ||||| || || ||| Sbjct 9004 TCCGACGCTTATTGAACTATGTTTCACAATGATGGTTATTGCCAACATCAAAAAATTAAA 8945 Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217 || | ||||||| | |||||||||| ||||||||||||||| | ||||||| Sbjct 8944 AA-CGACGTCGCCAAGAACGCTTGGTAGCCACAAGCCAGTTACCACTGTGGT 8894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853886163840