Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq17409 95.1 7e-18 seq1495 91.5 9e-17 seq57422 86.0 4e-15 seq70 78.8 6e-13 seq10214 73.4 2e-11 seq2412 73.4 2e-11 >seq17409 Length=5445 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1884 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1827 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 1826 TAAT-CAGCGCAAGCT 1812 >seq1495 Length=31017 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| || |||||||| |||||||||||||||||||| Sbjct 3460 CTCACTAAACCATT-CAATCGGTAGTA-GCAACGGGCGGTGTGTACAAAGGGCAGGGACG 3517 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 3518 TAAT-CAGCGCAAGCT 3532 >seq57422 Length=565 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||| || ||||||||| |||||||||||||||||||| Sbjct 44 CTCACTAAACCATT-CAATCGGTAGAAA-CGACGGGCGTTGTGTACAAAGGGCAGGGACG 101 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 102 TAAT-CAGCGCAAGCT 116 >seq70 Length=77654 Score = 78.8 bits (86), Expect = 6e-13 Identities = 78/96 (81%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 29 CAAAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGG 88 |||||||| | | || | |||||||| ||||| || ||| ||||| ||||||||||| Sbjct 40655 CAAAGCCACTAC--AACGACCTCACTAAACCATT-CAATCGATAGTA-GCGACGGGCGGT 40710 Query 89 GTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||||| | |||||||| Sbjct 40711 GTGTACAAAGGGCAACGACGTAAT-TAGCGCAAGCT 40745 >seq10214 Length=9767 Score = 73.4 bits (80), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || |||||||| || |||||||| |||||||||| ||||||||| Sbjct 7765 CTCACTAAACCATTCGAT-CGGTAGTA-GCAACGGGCGGTGTGTACAAAGAGCAGGGACG 7708 Query 109 TAATACAACGCAAG 122 |||| || ||||| Sbjct 7707 TAAT-CAGAGCAAG 7695 >seq2412 Length=25113 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| || || ||||| |||| |||||||||||||| Sbjct 823 CTCACTAAACCATT-CAATCGGTAGTA-GCAACTGGCGGTGTGTTCAAAGGGCAGGGACT 766 Query 109 TAATACAACGCAAGCT 124 |||| || | |||||| Sbjct 765 TAAT-CAGCACAAGCT 751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300630405200