Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq59378 109 6e-22 seq70 89.7 5e-16 seq39755 84.2 2e-14 >seq59378 Length=519 Score = 109 bits (120), Expect = 6e-22 Identities = 132/176 (75%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC--GAATACATTACCATG 70 ||||||||||| ||||| ||| | ||||||||||||| ||| | ||| | | |||| Sbjct 220 TTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTGTGCGCCTGAAAATTCTTGCATG 161 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| |||||||| | |||||||||||||| ||||| | ||| | |||||| | Sbjct 160 GAATAATGAAATAGGAC-TTCGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGT 103 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| || |||||| | |||| ||| | |||||||||||| |||| Sbjct 102 TAAGAGGGACAGACGGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTGGGAT 47 >seq70 Length=77654 Score = 89.7 bits (98), Expect = 5e-16 Identities = 130/183 (71%), Gaps = 11/183 (6%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTA------- 65 ||||||||||| ||||| ||| | ||||||||||||| ||| | | |||| Sbjct 41501 TTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTGTGCGCCTGAAAATTANNNNNNN 41442 Query 66 --CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123 ||||||||||| |||||||| | |||||||||||||| ||||| | ||| | | Sbjct 41441 NNNCATGGAATAATGAAATAGGAC-TTCGGTTCTATTTTGTTGGTTT-TCGGATCCGAAG 41384 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||| | || | ||| || ||| || | ||| ||| | |||||||||||| | Sbjct 41383 TAATGGTTAAGAGGGACAGACGGAGGCATTTGTACGGCGGTGTTAGAGGTGAAATTCTGG 41324 Query 184 GAT 186 ||| Sbjct 41323 GAT 41321 >seq39755 Length=1220 Score = 84.2 bits (92), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 4/132 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC--GAATACATTACCATG 70 ||||||||||| ||||| ||| | |||||||||| |||||| | ||| | || |||| Sbjct 261 TTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGACTTTGCGCCTGAAAATTTTTTCATG 202 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| ||||||| | | ||||||||||| |||| ||| ||| |||||| | Sbjct 201 GAATAATGACATAGGAC-TTCATTTCTATTTTGTTTGTTTTCAGGTCCG-AAGTAATGGT 144 Query 131 AAATACGGATAG 142 || ||||| || Sbjct 143 TAAAACGGACAG 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511701705600