Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25]
60,140 sequences; 344,202,215 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq17409 158 2e-36
seq1495 158 2e-36
seq57422 156 8e-36
seq18913 132 9e-29
seq83 118 2e-24
seq13426 111 3e-22
seq89 96.9 7e-18
seq2191 84.2 4e-14
seq70 80.6 5e-13
>seq17409
Length=5445
Score = 158 bits (174), Expect = 2e-36
Identities = 169/221 (76%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168
||||| |||||||||||||||||||||||||||||| | |||| |||| |||||||| |
Sbjct 1624 TTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGAGGCCACACGTGCGCTACAAT 1682
Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAA-GGTCTGGGTAATCTTGTTAAACTCT 227
||| | || | ||||| | | ||||| ||| || |||| || || || | | |
Sbjct 1683 GACGGTGCAAGCGAGTCTGGGAACCTGGCCTGAAAGGGTTGGGCAAACTATTTCATCACC 1742
Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287
|||||| ||||| | | ||||||||||| | | | || ||||||| ||| ||||| |
Sbjct 1743 GTCGTGACTGGGATCGGGGCTTGCAATTATTCCCCGTGAAAGAGGAATTCCTGGTAAGTG 1802
Query 288 CGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| | ||| ||| ||| |||||||||||||||||||||||
Sbjct 1803 CAAGCCATAAGCTTGCGCTGATTACGTCCCTGCCCTTTGTA 1843
>seq1495
Length=31017
Score = 158 bits (174), Expect = 2e-36
Identities = 196/267 (73%), Gaps = 12/267 (4%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127
|||||||||||||| | |||| || || || ||| || ||| |||||||||||||
Sbjct 3765 CTTCTTAGAGGGACAAGCGGCACACTTAAGTCGCACGAAATT-GAG-CAATAACAGGTCT 3708
Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187
||||||||||||||||| | ||||| |||| |||||||| || | | ||||||||||
Sbjct 3707 GTGATGCCCTTAGATGTCCGGGGCCACACGTGCGCTACAATGGCGGTGCCAACGAGTCTG 3648
Query 188 TCACCTTGGCCGGAAGGTCTG------GGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241
| | ||||| ||| | || | || || | | | |||||| |||||
Sbjct 3647 GGAACCTGGCCCGAAAGGGTGNNNNNNNNNNAACTGTTTCATCACCGTCGTGACTGGGAT 3588
Query 242 AGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCAC 301
| | ||||||||||| | | | |||||||||| ||| ||||| || |||| |||
Sbjct 3587 CGGGGCTTGCAATTATTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAATTCATTAGCTT 3528
Query 302 GCGTTGATTACGTCCCTGCCCTTTGTA 328
||| |||||||||||||||||||||||
Sbjct 3527 GCGCTGATTACGTCCCTGCCCTTTGTA 3501
>seq57422
Length=565
Score = 156 bits (172), Expect = 8e-36
Identities = 167/217 (77%), Gaps = 3/217 (1%)
Strand=Plus/Minus
Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173
|||||||||||||||||||||||||||| || | ||||| |||| |||||||| |||| |
Sbjct 300 GCAATAACAGGTCTGTGATGCCCTTAGACGTCCGGGGCCACACGTGCGCTACAATGACGG 241
Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGT-AATCTTGTTAAACTCTGTCGT 232
|||| ||||| | | ||||| |||| | | ||| || || || | | | ||||
Sbjct 240 TGCCAGCGAGTCTGGAAACCTGGCCCGAAGATGTTGGTCAAACTGCTTCATCACCATCGT 181
Query 233 G-CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291
| ||||| | || | ||||||||| ||||| |||||||||| || || || || |
Sbjct 180 GACTGGGCTCATGGC-TCGCAATTATTCCTCTTGAACGAGGAATTCCCGGTCAGTGCAAG 122
Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|||| ||| ||| |||||||||||||||||||||||
Sbjct 121 TCATAAGCTTGCGCTGATTACGTCCCTGCCCTTTGTA 85
>seq18913
Length=4889
Score = 132 bits (146), Expect = 9e-29
Identities = 193/264 (73%), Gaps = 18/264 (7%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC----TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127
|||||||||||||| | || | | ||| | ||| || ||| ||||||| ||||
Sbjct 3856 CTTCTTAGAGGGACAAGCGTCATATTTAAGTGGCACGAAATT-GAG-CAATAACGCGTCT 3913
Query 128 GTGATGCCCTTAGATGTTCTGG-GCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-T 185
|||||||||||||||| ||||| | | |||| |||||||| |||| | |||||||||| |
Sbjct 3914 GTGATGCCCTTAGATG-TCTGGAGACACACGTGCGCTACAATGACGGTGCCAACGAGTCT 3972
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG-CTGGGGATAGA 244
| |||| |||||| |||| |||| || || || | | ||||| ||||||
Sbjct 3973 GACCACC-TGGCCGAAAGGGTTGGGCAAACTGTTTTATCAAGTTCGTGACTGGGG----- 4026
Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304
||||||||| | | | | || ||||||| ||| |||| | |||| ||| |||
Sbjct 4027 --TTTGCAATTAATCCCCGTGAATGAGGAATTCCTGGTAAATGTAACTCATAAGCTTGCG 4084
Query 305 TTGATTACGTCCCTGCCCTTTGTA 328
|||||| ||||||||||||||||
Sbjct 4085 CTGATTATGTCCCTGCCCTTTGTA 4108
>seq83
Length=75776
Score = 118 bits (130), Expect = 2e-24
Identities = 154/209 (74%), Gaps = 7/209 (3%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127
|||||||||||||| | |||| || || || ||| || ||| |||||||||||||
Sbjct 16650 CTTCTTAGAGGGACAAGCGGCACACTTAAGTCGCACGAAATT-GAG-CAATAACAGGTCT 16707
Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TC 186
||||||||||||||||| | ||||| |||| || |||| |||| | |||| ||||| |
Sbjct 16708 GTGATGCCCTTAGATGTCCGGGGCCACACGTGCAATACAATGACGGTGCCAGCGAGTCTG 16767
Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246
|||| | || |||| |||| || || || | | |||||| ||||| | |
Sbjct 16768 GGAACCTGGCCCAAAAGGGTTGGGCAAACTGTTTCATCAACGTCGTGACTGGGATCGGGG 16827
Query 247 ATTGCAATTATTGCTCTTCAACGAGGAAT 275
||||||||||| | | | ||||||||||
Sbjct 16828 CTTGCAATTATTCCCCGTGAACGAGGAAT 16856
>seq13426
Length=7388
Score = 111 bits (122), Expect = 3e-22
Identities = 164/227 (72%), Gaps = 8/227 (4%)
Strand=Plus/Plus
Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTG-GGCCGCACGCGCGCTACAC 167
||||| |||||||| || |||||||||||||||||| | | |||| |||| ||||||||
Sbjct 3421 TTGAG-CAATAACAAGTATGTGATGCCCTTAGATGTCCAGTGGCCACACGTGCGCTACAA 3479
Query 168 TGACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTC 226
|||| ||| ||||| | |||| | | |||| | | || || || || | | |
Sbjct 3480 AAACAGTACCAGCGAGTCTGGAAACCTAGCCTGGAAAGGTTTGGCAAACTGTTTCATCAC 3539
Query 227 TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGC 286
||||| ||||| || ||||||||||| | | | |||||| ||| || ||||
Sbjct 3540 CATCGTGACTGGGATCTAGGCTTGCAATTATTCCCCATGAACGAGAAATTCCAGTTAAGT 3599
Query 287 GCGTGTCATCAGC-ACG----CGTTGATTACGTCCCTGCCCTTTGTA 328
|| ||||| ||| | | || ||||||| |||||||||||||||
Sbjct 3600 GCAAGTCATAAGCTAAGCTTTCGCTGATTACATCCCTGCCCTTTGTA 3646
>seq89
Length=74092
Score = 96.9 bits (106), Expect = 7e-18
Identities = 123/168 (73%), Gaps = 1/168 (1%)
Strand=Plus/Plus
Query 162 CTACACTGACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTT 220
||||| |||| | ||| ||||| | |||| | ||| |||| ||||| | || ||
Sbjct 55947 CTACAATGACGGTACCAGCGAGTCTGGAAACCTGGACCGAAAGGGTTGGGTTAACTGTTT 56006
Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280
| | | |||||| | | ||| | | ||||||||||| | | ||| |||||| ||||
Sbjct 56007 CATCACGGTCGTGATTGAGATCGGGGTTTGCAATTATTCTCCATGAACAAGGAATTCCTA 56066
Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|||||||| ||||||||| || ||||||| |||||| ||||||||
Sbjct 56067 GTAAGCGCAAGTCATCAGCTTGCACTGATTACTTCCCTGTCCTTTGTA 56114
>seq2191
Length=26383
Score = 84.2 bits (92), Expect = 4e-14
Identities = 65/76 (86%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168
||||| |||||||| |||||||||||| |||||||| | ||||||||| |||||||| |
Sbjct 20397 TTGAG-CAATAACATGTCTGTGATGCCGTTAGATGTCCGGGGCCGCACATGCGCTACAAT 20455
Query 169 GACAGAGCCAACGAGT 184
||| | ||||| ||||
Sbjct 20456 GACGGTGCCAATGAGT 20471
>seq70
Length=77654
Score = 80.6 bits (88), Expect = 5e-13
Identities = 74/94 (79%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294
|| |||| | | ||||||||||| | | | |||||||||| ||||||||| || ||||
Sbjct 40807 TGAGGATCGGGGCTTGCAATTATTTCCCGTGAACGAGGAATTCCTAGTAAGTGCAAGTCA 40748
Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||| ||| | |||||||| |||||||||||
Sbjct 40747 TAAGCTTGCGCTAATTACGTCGTTGCCCTTTGTA 40714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946630353920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |