Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq17409 158 2e-36 seq1495 158 2e-36 seq57422 156 8e-36 seq18913 132 9e-29 seq83 118 2e-24 seq13426 111 3e-22 seq89 96.9 7e-18 seq2191 84.2 4e-14 seq70 80.6 5e-13 >seq17409 Length=5445 Score = 158 bits (174), Expect = 2e-36 Identities = 169/221 (76%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| |||||||||||||||||||||||||||||| | |||| |||| |||||||| | Sbjct 1624 TTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGAGGCCACACGTGCGCTACAAT 1682 Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAA-GGTCTGGGTAATCTTGTTAAACTCT 227 ||| | || | ||||| | | ||||| ||| || |||| || || || | | | Sbjct 1683 GACGGTGCAAGCGAGTCTGGGAACCTGGCCTGAAAGGGTTGGGCAAACTATTTCATCACC 1742 Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 |||||| ||||| | | ||||||||||| | | | || ||||||| ||| ||||| | Sbjct 1743 GTCGTGACTGGGATCGGGGCTTGCAATTATTCCCCGTGAAAGAGGAATTCCTGGTAAGTG 1802 Query 288 CGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||| ||| ||| ||||||||||||||||||||||| Sbjct 1803 CAAGCCATAAGCTTGCGCTGATTACGTCCCTGCCCTTTGTA 1843 >seq1495 Length=31017 Score = 158 bits (174), Expect = 2e-36 Identities = 196/267 (73%), Gaps = 12/267 (4%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| | |||| || || || ||| || ||| ||||||||||||| Sbjct 3765 CTTCTTAGAGGGACAAGCGGCACACTTAAGTCGCACGAAATT-GAG-CAATAACAGGTCT 3708 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187 ||||||||||||||||| | ||||| |||| |||||||| || | | |||||||||| Sbjct 3707 GTGATGCCCTTAGATGTCCGGGGCCACACGTGCGCTACAATGGCGGTGCCAACGAGTCTG 3648 Query 188 TCACCTTGGCCGGAAGGTCTG------GGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 | | ||||| ||| | || | || || | | | |||||| ||||| Sbjct 3647 GGAACCTGGCCCGAAAGGGTGNNNNNNNNNNAACTGTTTCATCACCGTCGTGACTGGGAT 3588 Query 242 AGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCAC 301 | | ||||||||||| | | | |||||||||| ||| ||||| || |||| ||| Sbjct 3587 CGGGGCTTGCAATTATTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAATTCATTAGCTT 3528 Query 302 GCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||||||||||| Sbjct 3527 GCGCTGATTACGTCCCTGCCCTTTGTA 3501 >seq57422 Length=565 Score = 156 bits (172), Expect = 8e-36 Identities = 167/217 (77%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 |||||||||||||||||||||||||||| || | ||||| |||| |||||||| |||| | Sbjct 300 GCAATAACAGGTCTGTGATGCCCTTAGACGTCCGGGGCCACACGTGCGCTACAATGACGG 241 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGT-AATCTTGTTAAACTCTGTCGT 232 |||| ||||| | | ||||| |||| | | ||| || || || | | | |||| Sbjct 240 TGCCAGCGAGTCTGGAAACCTGGCCCGAAGATGTTGGTCAAACTGCTTCATCACCATCGT 181 Query 233 G-CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 | ||||| | || | ||||||||| ||||| |||||||||| || || || || | Sbjct 180 GACTGGGCTCATGGC-TCGCAATTATTCCTCTTGAACGAGGAATTCCCGGTCAGTGCAAG 122 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| ||| ||||||||||||||||||||||| Sbjct 121 TCATAAGCTTGCGCTGATTACGTCCCTGCCCTTTGTA 85 >seq18913 Length=4889 Score = 132 bits (146), Expect = 9e-29 Identities = 193/264 (73%), Gaps = 18/264 (7%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC----TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| | || | | ||| | ||| || ||| ||||||| |||| Sbjct 3856 CTTCTTAGAGGGACAAGCGTCATATTTAAGTGGCACGAAATT-GAG-CAATAACGCGTCT 3913 Query 128 GTGATGCCCTTAGATGTTCTGG-GCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-T 185 |||||||||||||||| ||||| | | |||| |||||||| |||| | |||||||||| | Sbjct 3914 GTGATGCCCTTAGATG-TCTGGAGACACACGTGCGCTACAATGACGGTGCCAACGAGTCT 3972 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG-CTGGGGATAGA 244 | |||| |||||| |||| |||| || || || | | ||||| |||||| Sbjct 3973 GACCACC-TGGCCGAAAGGGTTGGGCAAACTGTTTTATCAAGTTCGTGACTGGGG----- 4026 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 ||||||||| | | | | || ||||||| ||| |||| | |||| ||| ||| Sbjct 4027 --TTTGCAATTAATCCCCGTGAATGAGGAATTCCTGGTAAATGTAACTCATAAGCTTGCG 4084 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||||| |||||||||||||||| Sbjct 4085 CTGATTATGTCCCTGCCCTTTGTA 4108 >seq83 Length=75776 Score = 118 bits (130), Expect = 2e-24 Identities = 154/209 (74%), Gaps = 7/209 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| | |||| || || || ||| || ||| ||||||||||||| Sbjct 16650 CTTCTTAGAGGGACAAGCGGCACACTTAAGTCGCACGAAATT-GAG-CAATAACAGGTCT 16707 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TC 186 ||||||||||||||||| | ||||| |||| || |||| |||| | |||| ||||| | Sbjct 16708 GTGATGCCCTTAGATGTCCGGGGCCACACGTGCAATACAATGACGGTGCCAGCGAGTCTG 16767 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 |||| | || |||| |||| || || || | | |||||| ||||| | | Sbjct 16768 GGAACCTGGCCCAAAAGGGTTGGGCAAACTGTTTCATCAACGTCGTGACTGGGATCGGGG 16827 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAAT 275 ||||||||||| | | | |||||||||| Sbjct 16828 CTTGCAATTATTCCCCGTGAACGAGGAAT 16856 >seq13426 Length=7388 Score = 111 bits (122), Expect = 3e-22 Identities = 164/227 (72%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTG-GGCCGCACGCGCGCTACAC 167 ||||| |||||||| || |||||||||||||||||| | | |||| |||| |||||||| Sbjct 3421 TTGAG-CAATAACAAGTATGTGATGCCCTTAGATGTCCAGTGGCCACACGTGCGCTACAA 3479 Query 168 TGACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTC 226 |||| ||| ||||| | |||| | | |||| | | || || || || | | | Sbjct 3480 AAACAGTACCAGCGAGTCTGGAAACCTAGCCTGGAAAGGTTTGGCAAACTGTTTCATCAC 3539 Query 227 TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGC 286 ||||| ||||| || ||||||||||| | | | |||||| ||| || |||| Sbjct 3540 CATCGTGACTGGGATCTAGGCTTGCAATTATTCCCCATGAACGAGAAATTCCAGTTAAGT 3599 Query 287 GCGTGTCATCAGC-ACG----CGTTGATTACGTCCCTGCCCTTTGTA 328 || ||||| ||| | | || ||||||| ||||||||||||||| Sbjct 3600 GCAAGTCATAAGCTAAGCTTTCGCTGATTACATCCCTGCCCTTTGTA 3646 >seq89 Length=74092 Score = 96.9 bits (106), Expect = 7e-18 Identities = 123/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 162 CTACACTGACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTT 220 ||||| |||| | ||| ||||| | |||| | ||| |||| ||||| | || || Sbjct 55947 CTACAATGACGGTACCAGCGAGTCTGGAAACCTGGACCGAAAGGGTTGGGTTAACTGTTT 56006 Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280 | | | |||||| | | ||| | | ||||||||||| | | ||| |||||| |||| Sbjct 56007 CATCACGGTCGTGATTGAGATCGGGGTTTGCAATTATTCTCCATGAACAAGGAATTCCTA 56066 Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||| ||||||||| || ||||||| |||||| |||||||| Sbjct 56067 GTAAGCGCAAGTCATCAGCTTGCACTGATTACTTCCCTGTCCTTTGTA 56114 >seq2191 Length=26383 Score = 84.2 bits (92), Expect = 4e-14 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| |||||||| |||||||||||| |||||||| | ||||||||| |||||||| | Sbjct 20397 TTGAG-CAATAACATGTCTGTGATGCCGTTAGATGTCCGGGGCCGCACATGCGCTACAAT 20455 Query 169 GACAGAGCCAACGAGT 184 ||| | ||||| |||| Sbjct 20456 GACGGTGCCAATGAGT 20471 >seq70 Length=77654 Score = 80.6 bits (88), Expect = 5e-13 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 || |||| | | ||||||||||| | | | |||||||||| ||||||||| || |||| Sbjct 40807 TGAGGATCGGGGCTTGCAATTATTTCCCGTGAACGAGGAATTCCTAGTAAGTGCAAGTCA 40748 Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||| ||| | |||||||| ||||||||||| Sbjct 40747 TAAGCTTGCGCTAATTACGTCGTTGCCCTTTGTA 40714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946630353920