Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq27839 318 2e-84 seq9481 307 3e-81 seq17276 187 8e-45 seq1147 168 2e-39 seq57627 143 9e-32 seq386 136 1e-29 seq982 129 2e-27 seq707 111 5e-22 seq2228 95.1 4e-17 seq123 82.4 2e-13 seq5290 75.2 4e-11 >seq27839 Length=2641 Score = 318 bits (352), Expect = 2e-84 Identities = 224/256 (88%), Gaps = 11/256 (4%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC-------CGAAACG----G 236 |||||||| |||| || | | |||||||||||| | |||| |||| | | Sbjct 668 TAAGTAAAGAAACAATGATAGCAGTGGTATTTCATTAGCGCTAGACACCGAAGCACCCAG 609 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| ||||| | ||| ||| ||||||||||||||||||||||||||||| Sbjct 608 CTCCCACCTATACTACATCCATCATGTCTCCTCACAAAGTCGGACTAGAGTCAAGCTCAA 549 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 548 CAGGGTCTTCTTTCCCCGCTAATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 489 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 488 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 429 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 428 ACGAGGCATTTGGCTA 413 >seq9481 Length=10456 Score = 307 bits (340), Expect = 3e-81 Identities = 227/265 (86%), Gaps = 11/265 (4%) Strand=Plus/Plus Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC-------CGA 231 |||| ||| |||||||| |||| || | | |||||||||||| || ||| ||| Sbjct 9118 TTCACTGAATAAGTAAAGAAACAATGATAGCAGTGGTATTTCATTTACGCTGGACACCGA 9177 Query 232 AACGGC----TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287 | | | |||||| ||| ||||| | ||| ||| |||||||||||||||||||| Sbjct 9178 AGCACCCATTTCCCACCTATACTACATCCATCATGTCTCCTCACAAAGTCGGACTAGAGT 9237 Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 ||||||||||||||||||||||||||||| |||| ||||||||| |||||||| |||||| Sbjct 9238 CAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTCTGCCAAGCCCCTTCCCTTGTCTGTGG 9297 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 9298 TTTCGCTAGATAGTAGATAGGGACGGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 9357 Query 408 AATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||| Sbjct 9358 AATTAGATGACGAGGCATTTGGCTA 9382 >seq17276 Length=5499 Score = 187 bits (206), Expect = 8e-45 Identities = 156/191 (82%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 || ||| ||||| | ||| ||| | ||| ||| ||| || ||||||||| ||||||| Sbjct 3916 ACCTATACTACATCCATCATGTCTCCTTACAGAGTTGGATTATAGTCAAGCTAAACAGGG 3857 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 |||||||| || | | |||| ||||||||||||| || |||||||||| | |||||||| Sbjct 3856 TCTTCTTTTCCTGTTAATTCTGCCAAGCCCGTTCTCTAAGCTGTGGTTTTGTTAGATAGT 3797 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 || ||| |||| |||||||||||||||| |||| |||||||||| || ||| ||||| || Sbjct 3796 AGGTAGAGACAATGGGAATCTCGTTAATACATTTATGCGCGTCAATAGTTAAATGACAAG 3737 Query 422 GCATTTGGCTA 432 ||||||| ||| Sbjct 3736 GCATTTGACTA 3726 >seq1147 Length=34831 Score = 168 bits (186), Expect = 2e-39 Identities = 98/101 (97%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 6627 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTCGGTTGAATTTCTTCA 6686 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 ||||||||||||||||||||| ||||||||||||| ||||| Sbjct 6687 CTTTGACATTCAGAGCACTGGACAGAAATCACATTACGTCA 6727 >seq57627 Length=560 Score = 143 bits (158), Expect = 9e-32 Identities = 79/79 (100%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 60 Query 513 AGAAATCACATTGCGTCAA 531 ||||||||||||||||||| Sbjct 61 AGAAATCACATTGCGTCAA 79 >seq386 Length=50828 Score = 136 bits (150), Expect = 1e-29 Identities = 81/85 (95%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 447 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 506 ||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||| Sbjct 37753 TAGTTACTCCCGCTGTTTACTCGTGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 37694 Query 507 CTGGGCAGAAATCACATTGCGTCAA 531 ||||||| ||||||||||||||||| Sbjct 37693 CTGGGCATAAATCACATTGCGTCAA 37669 >seq982 Length=37059 Score = 129 bits (142), Expect = 2e-27 Identities = 99/117 (85%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 |||||||||||||| ||||| ||| || || ||||||||||| |||||||||||||||| Sbjct 17584 AAGCTCAACAGGGTTTTCTTCCCCTACTAATCCCGCCAAGCCCATTCCCTTGGCTGTGGT 17643 Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 ||||| || ||| | |||||||| ||||||| ||||||||||| |||| ||||| Sbjct 17644 TTCGC----TATTAGGTTGGGACAGTAGGAATCTGGTTAATCCATTTATGCACGTCA 17696 >seq707 Length=41709 Score = 111 bits (122), Expect = 5e-22 Identities = 125/164 (76%), Gaps = 20/164 (12%) Strand=Plus/Plus Query 175 CCGCTTCATTGATTAAGTaaa----aaaaCGATAAGGGTAGTGGTATTTCACTTGCGC-- 228 ||| | || ||| |||||||| |||| |||| | |||||||||||| |||||| Sbjct 7071 CCGTTCCACTGAATAAGTAAAGAGAAAAATGATA---GCAGTGGTATTTCATTTGCGCTA 7127 Query 229 -----CGAAACGGCTCCCACTTATTCTAC-ACCTC--TCAAGTCATTTCACAAAGTCGGA 280 |||| | ||||| ||| |||| || || ||| ||| |||||||||||||| Sbjct 7128 GGCTCCGAA---GGACCCACCTATACTACTACATCCATCATGTCTCTTCACAAAGTCGGA 7184 Query 281 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324 ||||||||||| |||||||||||||||||||||| | |||| || Sbjct 7185 CTAGAGTCAAGATCAACAGGGTCTTCTTTCCCCGTTAATTCTGC 7228 >seq2228 Length=26128 Score = 95.1 bits (104), Expect = 4e-17 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14978 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 15029 >seq123 Length=68410 Score = 82.4 bits (90), Expect = 2e-13 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 |||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 35925 TAGATGACGAAGCATTTGGCTACTTTAAGAGAGTCATAGTTACTCCCGCC 35876 >seq5290 Length=16230 Score = 75.2 bits (82), Expect = 4e-11 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTC 455 ||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 2325 TTAGATGACGAGGTATTTAGCTACCTTAAGAGAGTCATAGTTACTC 2280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634216590720