Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4966 297 6e-78 seq14408 214 5e-53 seq122 201 3e-49 seq2276 152 2e-34 seq70 127 6e-27 seq1829 113 1e-22 seq10621 111 5e-22 seq12499 100 9e-19 seq3813 82.4 2e-13 seq8108 77.0 1e-11 >seq4966 Length=16941 Score = 297 bits (328), Expect = 6e-78 Identities = 327/427 (77%), Gaps = 30/427 (7%) Strand=Plus/Plus Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || ||||| || || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 15877 TTAGATGTTCTATCCATTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTA 15936 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| | |||||||||| | | ||||||| | || ||||||||||||| ||||| Sbjct 15937 CCCGTTATCATCATGGTAGGCAAATCACCTACCAACAAA--TTGATAGGGCAGACATTTG 15994 Query 223 AATGAACCATCGCCGGCTCAAGGCCA--TGCGATTCGTTAAGTTATTATGAATCACCAAG 280 || || || |||||| | ||||||| |||||| || ||||||| || ||| || Sbjct 15995 AAAGATCCGTCGCCGACACAAGGCCGACTGCGATCAGTAAAGTTATCCAGAGTCATCACA 16054 Query 281 GA---------GCCC---CGAAGG-GCG-----TTGGTTTTTTATCTAATAAATACACCC 322 || || | ||||| ||| |||||| | | |||||||||| ||||| Sbjct 16055 GAATGTAACAGGCACAGCCGAAGCCGCGCTCGATTGGTTCTGT-TCTAATAAATGCACCC 16113 Query 323 CTTCCGAAG----TCGGGGTTTTTAG-CATGTATTAGCTCTAGAATTACCACGGTTATCC 377 |||| | || ||| || || |||||||||||||||||||||| || ||||||| Sbjct 16114 GTTCCCTTGCGCGTCAGGGATTCAAGGCATGTATTAGCTCTAGAATTACTACAGTTATCC 16173 Query 378 ATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 |||||||| ||| ||| || ||| ||| |||| |||||||||||||||| ||||||| Sbjct 16174 ATGTAGTATT-TACGATCTAAGGAACCATAGCTGACTTAATGAGCCATTCGCGGTTTCAC 16232 Query 438 TGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTA 497 || | | | | ||||||||||| ||||||||||||| |||||||||| |||||||| Sbjct 16233 CGTTTTAAG-GTGTGTACTTAGACATTCATGGCTTAATCTCTGAGACAAGCGTATGACTA 16291 Query 498 CTGGCAG 504 ||| ||| Sbjct 16292 CTGACAG 16298 >seq14408 Length=6848 Score = 214 bits (236), Expect = 5e-53 Identities = 295/405 (73%), Gaps = 26/405 (6%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATT-GTCACTAC 58 |||||||||| ||||| || || | | ||| || || || |||||| || |||||||| Sbjct 2275 GTACTCATTCGAATTAAAAAGCCTCGATGGAGTCCCGTGTCCGTATTTTTTTGTCACTAC 2334 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 ||| | ||| || || |||||||||| |||||||||||| |||||||||||||||||| Sbjct 2335 CTCTCTGTGCCGAGAGTGGGTAATTTTAGCGCCTGCTGCCGTCCTTGGATGTGGTAGCCA 2394 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||| ||| ||| |||||| ||||||||||||| ||| ||||||| | ||| | ||||| Sbjct 2395 TTTATCAAGCTTCCTCTCTGGAATCGAACCCTGATTACCCGTTAGCTGTTATCATCATGG 2454 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 ||||| | | |||| || | || |||||||| ||| ||||||| | || || ||| Sbjct 2455 TAGGCAAATCACCTATCAAC--AAACTGATAGGGTAGATATTTGAAAGGTCCGTCCCCGA 2512 Query 239 CTCAAGGCC--ATGCGATTCGTTAAGTTATTATGAATCACCAAGGA---------GCCC- 286 | ||||||| || ||| || ||||||| | ||| || || || | Sbjct 2513 CACAAGGCCGACTGTGATCAGTAAAGTTATCCAAAGTCATCACAGAGTGTAACAGGCACA 2572 Query 287 --CGAAGGGCGTTGGTTTTTTATCTAATAAATACACCC-----CTTCCGAAGTCGGGGTT 339 |||| |||||| | | |||||||||| || || ||| || ||| | | | Sbjct 2573 AATGAAGCCGATTGGTTCTGT-TCTAATAAATGCATCCGTCTGCTTGCG-GGTCAGAGAT 2630 Query 340 TTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAG 383 || | ||||| |||||||||| || ||| || ||||||||||||| Sbjct 2631 TTAAGGCATGCATTAGCTCTATAACTACTACAGTTATCCATGTAG 2675 >seq122 Length=68445 Score = 201 bits (222), Expect = 3e-49 Identities = 302/415 (73%), Gaps = 22/415 (5%) Strand=Plus/Plus Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||| ||||| ||| ||| || |||||||||||||||||||| ||||||||||| Sbjct 52859 TTGGATGTGTTAGCCATTTATCAAACTTCCTCTCCGGAATCGAACCCTGATTCCCCGTTA 52918 Query 163 CCCGTTGATAC-CATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221 |||||| || | |||||||||| | |||| || | || ||||||||||||| || | Sbjct 52919 CCCGTT-ATCCTCATGGTAGGCAAACCACCTATCAACAAA--TTGATAGGGCAGACATAT 52975 Query 222 GAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTAT-GAATC-ACCAA 279 ||| || || ||||| | || | | | || | ||| || | |||| | || Sbjct 52976 GAAAGATCCGTCGCCAACCCA--GTAAAGTTATCCAG--AGTCATCACAGAATGTAACAG 53031 Query 280 GGAGCCCCGAAGGGCGTT--GGTTTTTTA---TCTAATAAATACACCCCTTCCGAAG--- 331 | | |||||| | | || ||| |||||||||| ||||| || | | Sbjct 53032 GCACAGTCGAAGGCTCATCCGATTGGTTAAGCTCTAATAAATGCACCCGCCCCAATGCGG 53091 Query 332 -TCGGGGTTTTTAG-CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT 389 || ||| | || |||||||||| ||||||||||| || ||||| ||||||| | Sbjct 53092 GTCAGGGATACAAGACATGTATTAGTTCTAGAATTACTACAGTTATTCATGTAGCATTC- 53150 Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449 || ||| || ||| ||| ||||||||||||||||||||| |||||| || | || | Sbjct 53151 ACGATCTAAGGAACCATAGCTGATTTAATGAGCCATTCGCGGTTTCAACGTTTT-ATGGT 53209 Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||| ||||||||||| || | |||||||||||||||||||||||| Sbjct 53210 ATGCACTTAGATATGCATGGCTTGATACCTAAGACAAGCATATGACTACTGGCAG 53264 >seq2276 Length=25870 Score = 152 bits (168), Expect = 2e-34 Identities = 166/213 (78%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCC---GAAGT-CGGGGTTTTTAG-CATGTAT 351 ||||| | | |||||||||| |||| | || || | | ||| || || | ||||| Sbjct 4950 TGGTTCTGT-TCTAATAAATGCACCTGTCCCCTTGAGGAACAGGGATTCAAGACGTGTAT 4892 Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTG 411 ||||||||||||| | || ||||||||||||| | ||| ||| || |||| ||| ||| Sbjct 4891 TAGCTCTAGAATTTCTACAGTTATCCATGTAGCATT-TACGATCTAAGAAACCATATCTG 4833 Query 412 ATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCT 471 ||||| |||||||||||| ||||||| || | | | |||||||||| ||| |||||| Sbjct 4832 ATTTAGTGAGCCATTCGCGGTTTCACCGTTTTCAA-GTATATACTTAGATATGTATGGCT 4774 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| |||||| |||||||||||||| |||| || Sbjct 4773 TAACCTTTGATACAAGCATATGACTGCTGGTAG 4741 >seq70 Length=77654 Score = 127 bits (140), Expect = 6e-27 Identities = 107/130 (82%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||| |||||| || | ||| ||| || |||| |||||| | ||||||| Sbjct 41818 GTACTCATTCGAATTACGGAGCCTCAATTGAGTCCCTTATCCGTATTTTTCCTCACTACA 41877 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| |||||||||| | | ||||||||| |||||||||||| ||||| | Sbjct 41878 TCCCCGTGCCGGGAGTGGGTAATTTTCACCCCTGCTGCCGTCCTTGGATGTGATAGCCAT 41937 Query 120 TTCTCAGGCT 129 |||||||||| Sbjct 41938 TTCTCAGGCT 41947 >seq1829 Length=28577 Score = 113 bits (124), Expect = 1e-22 Identities = 122/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGA 405 || ||| ||| |||||| ||| || |||| |||||||| | ||| ||| || ||| | Sbjct 15233 ATATATAAGCACTAGAAGTACTACAGTTACCCATGTAGCATT-TACGATCTAAGTAACTA 15175 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465 | |||||||||| || | ||||| |||| || || | | | | ||||||||||| Sbjct 15174 TCTCTGATTTAATAAGTCCTTCGCGGTTTTACCGTTTTAAG-GTATGTACTTAGACATAT 15116 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||| ||||||||| |||||||||||| ||| Sbjct 15115 ATGGCTTAATCTCTGAGACAAGTATATGACTACTGACAG 15077 >seq10621 Length=9429 Score = 111 bits (122), Expect = 5e-22 Identities = 161/226 (71%), Gaps = 20/226 (9%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||| |||||| || |||| || | || ||| || ||||| || ||| ||||||||| | Sbjct 4783 GTAATCATTCGAACTACAGAGCCTTAATTGAGTCCCGTATCTGTGTTTTTTGTCACTAAC 4724 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 | |||||| | | | ||||||||| || | ||||| | |||||||||||||||||| | Sbjct 4723 TTCCCGTGACAGTAGCGGGTAATTTTCGTGACTGCTACAGTCCTTGGATGTGGTAGCCAT 4664 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 || | |||||||| ||| |||||| ||||||||| | ||| Sbjct 4663 TT---------------CAGAATCGAAACCTGATTCCCAGTTACCCGTAATCTTTACGGT 4619 Query 180 AGGCCACTATCCTACCATCGA-AAGTTGATAGGGCAGAAATTTGAA 224 || | | ||| | |||||| ||||||||| |||||| ||||||| Sbjct 4618 AGACAA--ATCACA-CATCGACAAGTTGATACGGCAGATATTTGAA 4576 >seq12499 Length=7984 Score = 100 bits (110), Expect = 9e-19 Identities = 100/126 (79%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTT-ATT-GTCACTA 57 |||||||||| |||||| || | || ||| || | ||| |||||| ||| || |||| Sbjct 1978 GTACTCATTCGAATTACGGAGCTCGAATTGAGTCCCGCATCCGTATTTTATTCGTTACTA 2037 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 ||| || ||| |||| ||| ||||||| |||||||||||| ||||||||| | |||||| Sbjct 2038 CCTTCCTGTGCCGGGGTTGCGTAATTTTCGCGCCTGCTGCTGTCCTTGGATTTAGTAGCC 2097 Query 118 GTTTCT 123 ||||| Sbjct 2098 ATTTCT 2103 >seq3813 Length=19902 Score = 82.4 bits (90), Expect = 2e-13 Identities = 82/105 (78%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||| || |||||| ||| || ||| |||||||| |||||| | ||||||||| Sbjct 2273 GTACTCAATCGAATTACGGAACCTTAATTGAGTCCTGTATCCGTATTTTTCGTCACTACC 2214 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTT 104 |||||||| ||| |||||||||| || |||||| || | ||| Sbjct 2213 TCCCCGTGCTAGGAGTGGGTAATTTTTGCACCTGCTACCGTTCTT 2169 >seq8108 Length=11957 Score = 77.0 bits (84), Expect = 1e-11 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||| |||||||| ||||||||||||||||||||||| || Sbjct 2666 TATTTAGACATGCATGACTTAATCTCTGAGACAAGCATATGACTACTGGAAG 2717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509491645440