Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25]
60,140 sequences; 344,202,215 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq4966 297 6e-78
seq14408 214 5e-53
seq122 201 3e-49
seq2276 152 2e-34
seq70 127 6e-27
seq1829 113 1e-22
seq10621 111 5e-22
seq12499 100 9e-19
seq3813 82.4 2e-13
seq8108 77.0 1e-11
>seq4966
Length=16941
Score = 297 bits (328), Expect = 6e-78
Identities = 327/427 (77%), Gaps = 30/427 (7%)
Strand=Plus/Plus
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
|| ||||| || || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 15877 TTAGATGTTCTATCCATTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTA 15936
Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222
|||||| | |||||||||| | | ||||||| | || ||||||||||||| |||||
Sbjct 15937 CCCGTTATCATCATGGTAGGCAAATCACCTACCAACAAA--TTGATAGGGCAGACATTTG 15994
Query 223 AATGAACCATCGCCGGCTCAAGGCCA--TGCGATTCGTTAAGTTATTATGAATCACCAAG 280
|| || || |||||| | ||||||| |||||| || ||||||| || ||| ||
Sbjct 15995 AAAGATCCGTCGCCGACACAAGGCCGACTGCGATCAGTAAAGTTATCCAGAGTCATCACA 16054
Query 281 GA---------GCCC---CGAAGG-GCG-----TTGGTTTTTTATCTAATAAATACACCC 322
|| || | ||||| ||| |||||| | | |||||||||| |||||
Sbjct 16055 GAATGTAACAGGCACAGCCGAAGCCGCGCTCGATTGGTTCTGT-TCTAATAAATGCACCC 16113
Query 323 CTTCCGAAG----TCGGGGTTTTTAG-CATGTATTAGCTCTAGAATTACCACGGTTATCC 377
|||| | || ||| || || |||||||||||||||||||||| || |||||||
Sbjct 16114 GTTCCCTTGCGCGTCAGGGATTCAAGGCATGTATTAGCTCTAGAATTACTACAGTTATCC 16173
Query 378 ATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437
|||||||| ||| ||| || ||| ||| |||| |||||||||||||||| |||||||
Sbjct 16174 ATGTAGTATT-TACGATCTAAGGAACCATAGCTGACTTAATGAGCCATTCGCGGTTTCAC 16232
Query 438 TGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTA 497
|| | | | | ||||||||||| ||||||||||||| |||||||||| ||||||||
Sbjct 16233 CGTTTTAAG-GTGTGTACTTAGACATTCATGGCTTAATCTCTGAGACAAGCGTATGACTA 16291
Query 498 CTGGCAG 504
||| |||
Sbjct 16292 CTGACAG 16298
>seq14408
Length=6848
Score = 214 bits (236), Expect = 5e-53
Identities = 295/405 (73%), Gaps = 26/405 (6%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATT-GTCACTAC 58
|||||||||| ||||| || || | | ||| || || || |||||| || ||||||||
Sbjct 2275 GTACTCATTCGAATTAAAAAGCCTCGATGGAGTCCCGTGTCCGTATTTTTTTGTCACTAC 2334
Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118
||| | ||| || || |||||||||| |||||||||||| ||||||||||||||||||
Sbjct 2335 CTCTCTGTGCCGAGAGTGGGTAATTTTAGCGCCTGCTGCCGTCCTTGGATGTGGTAGCCA 2394
Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178
||| ||| ||| |||||| ||||||||||||| ||| ||||||| | ||| | |||||
Sbjct 2395 TTTATCAAGCTTCCTCTCTGGAATCGAACCCTGATTACCCGTTAGCTGTTATCATCATGG 2454
Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238
||||| | | |||| || | || |||||||| ||| ||||||| | || || |||
Sbjct 2455 TAGGCAAATCACCTATCAAC--AAACTGATAGGGTAGATATTTGAAAGGTCCGTCCCCGA 2512
Query 239 CTCAAGGCC--ATGCGATTCGTTAAGTTATTATGAATCACCAAGGA---------GCCC- 286
| ||||||| || ||| || ||||||| | ||| || || || |
Sbjct 2513 CACAAGGCCGACTGTGATCAGTAAAGTTATCCAAAGTCATCACAGAGTGTAACAGGCACA 2572
Query 287 --CGAAGGGCGTTGGTTTTTTATCTAATAAATACACCC-----CTTCCGAAGTCGGGGTT 339
|||| |||||| | | |||||||||| || || ||| || ||| | | |
Sbjct 2573 AATGAAGCCGATTGGTTCTGT-TCTAATAAATGCATCCGTCTGCTTGCG-GGTCAGAGAT 2630
Query 340 TTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAG 383
|| | ||||| |||||||||| || ||| || |||||||||||||
Sbjct 2631 TTAAGGCATGCATTAGCTCTATAACTACTACAGTTATCCATGTAG 2675
>seq122
Length=68445
Score = 201 bits (222), Expect = 3e-49
Identities = 302/415 (73%), Gaps = 22/415 (5%)
Strand=Plus/Plus
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
||||||||| ||||| ||| ||| || |||||||||||||||||||| |||||||||||
Sbjct 52859 TTGGATGTGTTAGCCATTTATCAAACTTCCTCTCCGGAATCGAACCCTGATTCCCCGTTA 52918
Query 163 CCCGTTGATAC-CATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221
|||||| || | |||||||||| | |||| || | || ||||||||||||| || |
Sbjct 52919 CCCGTT-ATCCTCATGGTAGGCAAACCACCTATCAACAAA--TTGATAGGGCAGACATAT 52975
Query 222 GAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTAT-GAATC-ACCAA 279
||| || || ||||| | || | | | || | ||| || | |||| | ||
Sbjct 52976 GAAAGATCCGTCGCCAACCCA--GTAAAGTTATCCAG--AGTCATCACAGAATGTAACAG 53031
Query 280 GGAGCCCCGAAGGGCGTT--GGTTTTTTA---TCTAATAAATACACCCCTTCCGAAG--- 331
| | |||||| | | || ||| |||||||||| ||||| || | |
Sbjct 53032 GCACAGTCGAAGGCTCATCCGATTGGTTAAGCTCTAATAAATGCACCCGCCCCAATGCGG 53091
Query 332 -TCGGGGTTTTTAG-CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT 389
|| ||| | || |||||||||| ||||||||||| || ||||| ||||||| |
Sbjct 53092 GTCAGGGATACAAGACATGTATTAGTTCTAGAATTACTACAGTTATTCATGTAGCATTC- 53150
Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449
|| ||| || ||| ||| ||||||||||||||||||||| |||||| || | || |
Sbjct 53151 ACGATCTAAGGAACCATAGCTGATTTAATGAGCCATTCGCGGTTTCAACGTTTT-ATGGT 53209
Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
| ||||||| ||||||||||| || | ||||||||||||||||||||||||
Sbjct 53210 ATGCACTTAGATATGCATGGCTTGATACCTAAGACAAGCATATGACTACTGGCAG 53264
>seq2276
Length=25870
Score = 152 bits (168), Expect = 2e-34
Identities = 166/213 (78%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCC---GAAGT-CGGGGTTTTTAG-CATGTAT 351
||||| | | |||||||||| |||| | || || | | ||| || || | |||||
Sbjct 4950 TGGTTCTGT-TCTAATAAATGCACCTGTCCCCTTGAGGAACAGGGATTCAAGACGTGTAT 4892
Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTG 411
||||||||||||| | || ||||||||||||| | ||| ||| || |||| ||| |||
Sbjct 4891 TAGCTCTAGAATTTCTACAGTTATCCATGTAGCATT-TACGATCTAAGAAACCATATCTG 4833
Query 412 ATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCT 471
||||| |||||||||||| ||||||| || | | | |||||||||| ||| ||||||
Sbjct 4832 ATTTAGTGAGCCATTCGCGGTTTCACCGTTTTCAA-GTATATACTTAGATATGTATGGCT 4774
Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||| |||||| |||||||||||||| |||| ||
Sbjct 4773 TAACCTTTGATACAAGCATATGACTGCTGGTAG 4741
>seq70
Length=77654
Score = 127 bits (140), Expect = 6e-27
Identities = 107/130 (82%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
|||||||||| |||||| || | ||| ||| || |||| |||||| | |||||||
Sbjct 41818 GTACTCATTCGAATTACGGAGCCTCAATTGAGTCCCTTATCCGTATTTTTCCTCACTACA 41877
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
|||||||| ||||| |||||||||| | | ||||||||| |||||||||||| ||||| |
Sbjct 41878 TCCCCGTGCCGGGAGTGGGTAATTTTCACCCCTGCTGCCGTCCTTGGATGTGATAGCCAT 41937
Query 120 TTCTCAGGCT 129
||||||||||
Sbjct 41938 TTCTCAGGCT 41947
>seq1829
Length=28577
Score = 113 bits (124), Expect = 1e-22
Identities = 122/159 (77%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGA 405
|| ||| ||| |||||| ||| || |||| |||||||| | ||| ||| || ||| |
Sbjct 15233 ATATATAAGCACTAGAAGTACTACAGTTACCCATGTAGCATT-TACGATCTAAGTAACTA 15175
Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465
| |||||||||| || | ||||| |||| || || | | | | |||||||||||
Sbjct 15174 TCTCTGATTTAATAAGTCCTTCGCGGTTTTACCGTTTTAAG-GTATGTACTTAGACATAT 15116
Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||| ||||||||| |||||||||||| |||
Sbjct 15115 ATGGCTTAATCTCTGAGACAAGTATATGACTACTGACAG 15077
>seq10621
Length=9429
Score = 111 bits (122), Expect = 5e-22
Identities = 161/226 (71%), Gaps = 20/226 (9%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
||| |||||| || |||| || | || ||| || ||||| || ||| ||||||||| |
Sbjct 4783 GTAATCATTCGAACTACAGAGCCTTAATTGAGTCCCGTATCTGTGTTTTTTGTCACTAAC 4724
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
| |||||| | | | ||||||||| || | ||||| | |||||||||||||||||| |
Sbjct 4723 TTCCCGTGACAGTAGCGGGTAATTTTCGTGACTGCTACAGTCCTTGGATGTGGTAGCCAT 4664
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179
|| | |||||||| ||| |||||| ||||||||| | |||
Sbjct 4663 TT---------------CAGAATCGAAACCTGATTCCCAGTTACCCGTAATCTTTACGGT 4619
Query 180 AGGCCACTATCCTACCATCGA-AAGTTGATAGGGCAGAAATTTGAA 224
|| | | ||| | |||||| ||||||||| |||||| |||||||
Sbjct 4618 AGACAA--ATCACA-CATCGACAAGTTGATACGGCAGATATTTGAA 4576
>seq12499
Length=7984
Score = 100 bits (110), Expect = 9e-19
Identities = 100/126 (79%), Gaps = 3/126 (2%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTT-ATT-GTCACTA 57
|||||||||| |||||| || | || ||| || | ||| |||||| ||| || ||||
Sbjct 1978 GTACTCATTCGAATTACGGAGCTCGAATTGAGTCCCGCATCCGTATTTTATTCGTTACTA 2037
Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117
||| || ||| |||| ||| ||||||| |||||||||||| ||||||||| | ||||||
Sbjct 2038 CCTTCCTGTGCCGGGGTTGCGTAATTTTCGCGCCTGCTGCTGTCCTTGGATTTAGTAGCC 2097
Query 118 GTTTCT 123
|||||
Sbjct 2098 ATTTCT 2103
>seq3813
Length=19902
Score = 82.4 bits (90), Expect = 2e-13
Identities = 82/105 (78%), Gaps = 1/105 (1%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGCCCTGTATCAGTATTTATTGTCACTACC 59
||||||| || |||||| ||| || ||| |||||||| |||||| | |||||||||
Sbjct 2273 GTACTCAATCGAATTACGGAACCTTAATTGAGTCCTGTATCCGTATTTTTCGTCACTACC 2214
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTT 104
|||||||| ||| |||||||||| || |||||| || | |||
Sbjct 2213 TCCCCGTGCTAGGAGTGGGTAATTTTTGCACCTGCTACCGTTCTT 2169
>seq8108
Length=11957
Score = 77.0 bits (84), Expect = 1e-11
Identities = 48/52 (92%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|| ||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 2666 TATTTAGACATGCATGACTTAATCTCTGAGACAAGCATATGACTACTGGAAG 2717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1509491645440
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