Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4373 187 2e-42 seq5303 122 7e-23 >seq4373 Length=18302 Score = 187 bits (206), Expect = 2e-42 Identities = 535/813 (66%), Gaps = 10/813 (1%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 |||||| || || || || || | |||||||| | |||||||| || ||| | ||| Sbjct 9991 GAACCCTTACTGAAACCAAACCCACACCGTTTCGTCCTTTTCCCCATAGAATATCACGAT 10050 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 | |||| | || || ||||| | |||||| || ||||| ||||| ||||| |||||| Sbjct 10051 GTCTGGCATTTTTATAAGAAGGCTGTAGCTTCTTTTTGGACTGTGGAAGAGGTGGATTTG 10110 Query 61147 TCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACA 61205 |||||||| | | | |||||| || | | | || |||| |||||||| | Sbjct 10111 TCCAAAGATCTCATACATTGGGAGTCGCTCA-AGGTTGGGGAACGTCATTTCATATCCTA 10169 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 ||||| || |||||||| || ||||| || || ||||| | || ||||| || Sbjct 10170 CGTGTTAGCTTTCTTTGCGGCGAGTGACGGAATTGTACTCGAGAACCTCTTAGAACGCTT 10229 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | ||||| || || | | |||| ||||| || || || | ||||| || || || Sbjct 10230 CAGCCAGGAAGTCCAGATCCCAGAGGTTCGTTGCTTTTATGGAATGCAGATAGCTATTGA 10289 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA 61385 |||| | ||||| || |||||| | | | || ||||| ||||||| || || Sbjct 10290 GAATATTCACTCTGAAATGTACTCTTTATTAATTGATACATACATCAAAGACTCCAAAGA 10349 Query 61386 ACGTGAACGATTGTTCAATGCCAT-CGAGACGATACCGGCGGTGAAGCGGAAAGCGGATT 61444 | | || | ||||| ||||| | || || | | || | || || | | Sbjct 10350 AAGGGACTTTCTCTTCAACGCCATAAGCAACTTAACTTGTGTTGCA-AAAAAGGCTCAGT 10408 Query 61445 GGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTG 61504 |||| || ||||||| | | | |||| |||| ||||| || | || |||| Sbjct 10409 GGGCATTAGATTGGATTGGAGATTCCAAATCTACTTTTGCAGAACGTTTAATTGCTTTTG 10468 Query 61505 CGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAAC 61564 | | || || ||||| ||||| ||| || || || || || ||| | ||||||| Sbjct 10469 CAGCAGTGGAAGGTGTTTTTTTTTCTGGTAGCTTCGCAGCTATATTCTGGCTTAAGAAAC 10528 Query 61565 GTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGC 61624 | || |||||||| || ||| | || |||||||| || || | ||||| || | | Sbjct 10529 GAGGTCTTATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTTC 10588 Query 61625 ATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGC 61684 |||||||||| ||| | | |||| |||| || | | || || ||| | || | Sbjct 10589 ATTGTGATTTCGCTTGTCTATTATTTAAAC---ATATTATCAAAAAGCCTTCGAAAGAAC 10645 Query 61685 GTG-TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCT 61743 ||| || || | || | | ||||| || || |||||||| ||| | | || ||| Sbjct 10646 GTGTTGAGTCA-ATAATAAGAGAGGCAGTTCTAATAGAACAGGAGTTTTTATCAGAAGCT 10704 Query 61744 TTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTT 61803 | || ||| | || || |||||||| ||| |||| ||||| ||||||||| | Sbjct 10705 CTACCAGTCAGCTTAATTGGAATGAATTGCAAACTGATGTGTCAGTACATTGAATTTATC 10764 Query 61804 GCCGACCGTCTGTTGGTCG-ATTTGGGTATGAA 61835 || ||| | || | || | | |||| |||||| Sbjct 10765 GCAGACAGGCTACTAGTTGAACTTGGTTATGAA 10797 >seq5303 Length=16207 Score = 122 bits (134), Expect = 7e-23 Identities = 199/287 (69%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 66254 TCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGAC 66313 ||||| ||| ||||||| ||||| || | |||||||| || ||| ||| || | | Sbjct 6458 TCGAAATTTTCGCCCCATAGTTCGGGCAAGCCTGGACACTCATGAGGATCCATAAGTGTC 6517 Query 66314 CAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAG 66373 || | | | | ||| || || |||||||| | ||||||||||||||||| |||| Sbjct 6518 CACTTATCGTTAGATTCAACGCGGCGCATAAACAAGTCAGGTATCCAGAGGGCAAAGAAC 6577 Query 66374 AGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAG 66433 | || ||||| || ||| || ||| |||||| |||| || | ||||| ||| Sbjct 6578 AAGTCCCGTGCACGAATCTCTTCGGCGCCAGTATTTTTCCGCATTTCTATGAACTGAAAT 6637 Query 66434 ATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCT 66493 | || | ||||| ||||| | ||| ||||| || | || ||| ||| || ||| Sbjct 6638 ACATCAGGGTGCCAAGGTTCTAAGTACATGGCAAAGGCTCCTGGACGCTTGTTACCTCCT 6697 Query 66494 TGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 ||||| || || || || | ||||| |||||||||||||| || Sbjct 6698 TGGTCAACATATCGTGCAGTGCTATTGAATACACGCAACATCGGGAC 6744 Score = 102 bits (112), Expect = 6e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 66010 AAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGT 66069 || ||| || | || ||||||||| | ||||| || | | |||||| || |||||||| Sbjct 5794 AATAGAGGCCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCGGT 5853 Query 66070 GCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGC 66129 ||| || || || || || || ||||| | || || ||||| || || ||||| | Sbjct 5854 GCATAGGTTGCTACAACGAATTGTGCCTAGATGTTGGTGATTTGATTTACGGTTGCAAGA 5913 Query 66130 ATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCC 66188 ||||||||||| ||| | ||| |||| || |||| ||| | ||||| || |||| || Sbjct 5914 ATCCTTGTACAACATAAATGGATTGCCTGTTTCAATCTGGCATTCAATAATAGCGTACC 5972 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 65152 CCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACATGCATATT 65211 |||||||||||||||||| || || |||| |||| ||||| | ||| | ||| | || Sbjct 3719 CCAAGCATAGAAATGCATACTTGTTATTTTTCCATAGTTCGGTTGGGCGAGATGTAAGTT 3778 Query 65212 CAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGACG 65271 | ||||| ||||| || || | | ||||| |||||||||| || || || Sbjct 3779 AAGAGACTGGCTCTGGTCAATAAATGGGGCACGACCTGCAGCCATATCGATAATCTTCTT 3838 Query 65272 TCCCGATATCTCCCAGACGGTCTTGTACA 65300 | ||| |||||||| || |||||||||| Sbjct 3839 TTGCGAAATCTCCCATACTGTCTTGTACA 3867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397276600049600