Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06-
09] 29,834 sequences; 375,894,156 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq77 147 3e-33
seq1086 109 8e-22
seq47 109 8e-22
seq937 102 1e-19
seq148 84.2 3e-14
>seq77
Length=653045
Score = 147 bits (162), Expect = 3e-33
Identities = 171/224 (76%), Gaps = 5/224 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| |
Sbjct 459669 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 459726
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119
|||||| | | || |||||||| | ||||| |||||| | | || || ||
Sbjct 459727 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 459786
Query 120 ACCCGGACCTGTCG-GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
||| ||| ||| |||| | | ||||||| || | ||| |||||||| ||||
Sbjct 459787 GCCCAACCCTTTCGAGCCAGGTTCCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 459846
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 459847 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 459889
>seq1086
Length=81274
Score = 109 bits (120), Expect = 8e-22
Identities = 164/224 (73%), Gaps = 12/224 (5%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||| ||| ||||| |||| | | |||| ||||||| |
Sbjct 63823 GTACAAAGGGCAGGGACATAATCAGCGCAAGCTT-ATGAGTTACATTTACCAGGAATT-C 63880
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||| || | | | |||||||| | || | | | ||||||| || ||
Sbjct 63881 CTCATTCACGGGGATTAATTGCAAACCCCAGTCACGAACTTGATGAAAC-----AGTTTG 63935
Query 121 CCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||| ||| ||||||| |||| | |||||||||| | ||| |||||||| |||| |
Sbjct 63936 CCCAACCCTTTCGGCCA-GGTGGTCAGACTCGTTGGCACCGTCATTGTAGCGCACGTGTG 63994
Query 180 GC-CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
| ||||| |||||||||||||||||||| ||||||| |||||
Sbjct 63995 TCTCCAGA-CATCTAAGGGCATCACAGACGCGTTATTG-CTCAA 64036
>seq47
Length=754565
Score = 109 bits (120), Expect = 8e-22
Identities = 161/220 (73%), Gaps = 10/220 (5%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||| |||||||||| ||| ||| ||||| |||||| || || || |||||| |
Sbjct 135495 GTACAAAGGCCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTGACCGGGAATT-C 135552
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATC--CCCA-TCACGATGAAATTTCAA-AG 116
|||||| ||| || |||||| || | || |||| |||||||| | || ||
Sbjct 135553 CTCGTTCAAGGGGAATAATTGC---GAGCCATGAGCCCAGTCACGATGGCGATGAAACAG 135609
Query 117 ATT-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175
|| ||| | || ||||| | | |||||| || | ||| |||||||| ||
Sbjct 135610 TTTGACCAACATCTTCGGGCCAGGTTTCCAGACTCACTGGCACCGTCATTGTAGCGCACG 135669
Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 215
|| ||||| | || ||||||||||||||||||||||||||
Sbjct 135670 TGTGGCCCCGGACGTCTAAGGGCATCACAGACCTGTTATT 135709
>seq937
Length=103887
Score = 102 bits (112), Expect = 1e-19
Identities = 156/218 (72%), Gaps = 22/218 (10%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| || ||||| |||||| || ||||| ||||| |||
Sbjct 28867 GTACAAAGGGCAGGGACGTAATCAGCGTAAGCTT-ATGACTTGCACTTACCAGGAA-TTC 28924
Query 61 CTCGTTGAAGACCAACAATTGCAA----TGAT-CTATCCCCATCACGATGAAATTTCAAA 115
|||||| | || || |||||||| |||| ||| || | ||| |
Sbjct 28925 CTCGTTCACGAGGAATAATTGCAAGCCCTGATCCTAGTCC--TGACGGT----------- 28971
Query 116 GATTACCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGC 174
| | ||| ||| || ||||| | | ||||||| || | ||| |||||||| |
Sbjct 28972 -ACTGCCCACCCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCGCCGTCATTGTAGCGCTC 29030
Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 212
||| | ||| | ||||||||||||||||||||||| ||
Sbjct 29031 GTGTGACCCCGGACATCTAAGGGCATCACAGACCTATT 29068
>seq148
Length=510417
Score = 84.2 bits (92), Expect = 3e-14
Identities = 66/78 (85%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 145 AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204
||||||| || | ||| |||||||| |||| ||||| | ||||||||||||||||||
Sbjct 448305 AGACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACA 448364
Query 205 GACCTGTTATTGCCTCAA 222
|||||||||||| |||||
Sbjct 448365 GACCTGTTATTG-CTCAA 448381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751782659310
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |