Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq77 147 3e-33 seq1086 109 8e-22 seq47 109 8e-22 seq937 102 1e-19 seq148 84.2 3e-14 >seq77 Length=653045 Score = 147 bits (162), Expect = 3e-33 Identities = 171/224 (76%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 459669 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 459726 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||||||| | ||||| |||||| | | || || || Sbjct 459727 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 459786 Query 120 ACCCGGACCTGTCG-GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| ||| |||| | | ||||||| || | ||| |||||||| |||| Sbjct 459787 GCCCAACCCTTTCGAGCCAGGTTCCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 459846 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | |||||||||||||||||||||||||||||| ||||| Sbjct 459847 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 459889 >seq1086 Length=81274 Score = 109 bits (120), Expect = 8e-22 Identities = 164/224 (73%), Gaps = 12/224 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||| ||| ||||| |||| | | |||| ||||||| | Sbjct 63823 GTACAAAGGGCAGGGACATAATCAGCGCAAGCTT-ATGAGTTACATTTACCAGGAATT-C 63880 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||| || | | | |||||||| | || | | | ||||||| || || Sbjct 63881 CTCATTCACGGGGATTAATTGCAAACCCCAGTCACGAACTTGATGAAAC-----AGTTTG 63935 Query 121 CCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| ||||||| |||| | |||||||||| | ||| |||||||| |||| | Sbjct 63936 CCCAACCCTTTCGGCCA-GGTGGTCAGACTCGTTGGCACCGTCATTGTAGCGCACGTGTG 63994 Query 180 GC-CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 | ||||| |||||||||||||||||||| ||||||| ||||| Sbjct 63995 TCTCCAGA-CATCTAAGGGCATCACAGACGCGTTATTG-CTCAA 64036 >seq47 Length=754565 Score = 109 bits (120), Expect = 8e-22 Identities = 161/220 (73%), Gaps = 10/220 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| |||||||||| ||| ||| ||||| |||||| || || || |||||| | Sbjct 135495 GTACAAAGGCCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTGACCGGGAATT-C 135552 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATC--CCCA-TCACGATGAAATTTCAA-AG 116 |||||| ||| || |||||| || | || |||| |||||||| | || || Sbjct 135553 CTCGTTCAAGGGGAATAATTGC---GAGCCATGAGCCCAGTCACGATGGCGATGAAACAG 135609 Query 117 ATT-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 || ||| | || ||||| | | |||||| || | ||| |||||||| || Sbjct 135610 TTTGACCAACATCTTCGGGCCAGGTTTCCAGACTCACTGGCACCGTCATTGTAGCGCACG 135669 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 215 || ||||| | || |||||||||||||||||||||||||| Sbjct 135670 TGTGGCCCCGGACGTCTAAGGGCATCACAGACCTGTTATT 135709 >seq937 Length=103887 Score = 102 bits (112), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 22/218 (10%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| || ||||| |||||| || ||||| ||||| ||| Sbjct 28867 GTACAAAGGGCAGGGACGTAATCAGCGTAAGCTT-ATGACTTGCACTTACCAGGAA-TTC 28924 Query 61 CTCGTTGAAGACCAACAATTGCAA----TGAT-CTATCCCCATCACGATGAAATTTCAAA 115 |||||| | || || |||||||| |||| ||| || | ||| | Sbjct 28925 CTCGTTCACGAGGAATAATTGCAAGCCCTGATCCTAGTCC--TGACGGT----------- 28971 Query 116 GATTACCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGC 174 | | ||| ||| || ||||| | | ||||||| || | ||| |||||||| | Sbjct 28972 -ACTGCCCACCCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCGCCGTCATTGTAGCGCTC 29030 Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 212 ||| | ||| | ||||||||||||||||||||||| || Sbjct 29031 GTGTGACCCCGGACATCTAAGGGCATCACAGACCTATT 29068 >seq148 Length=510417 Score = 84.2 bits (92), Expect = 3e-14 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 145 AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204 ||||||| || | ||| |||||||| |||| ||||| | |||||||||||||||||| Sbjct 448305 AGACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACA 448364 Query 205 GACCTGTTATTGCCTCAA 222 |||||||||||| ||||| Sbjct 448365 GACCTGTTATTG-CTCAA 448381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751782659310