Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq564 136 7e-30 seq378 125 1e-26 seq1276 105 1e-20 >seq564 Length=206412 Score = 136 bits (150), Expect = 7e-30 Identities = 180/245 (73%), Gaps = 21/245 (9%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATG 131 ||||||||||| ||||| ||||| ||||||||||||| ||| | ||| | | ||||| Sbjct 119364 TTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTGTGCGCCTGAAAATTATTGCATG 119305 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGAT 190 ||||||| |||||||| | |||||||||||||||||||| | ||| ||| |||||| | Sbjct 119304 GAATAATGAAATAGGAC-TTCGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGT 119247 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| || ||||| | |||| |||||||| |||| Sbjct 119246 TAAGAGGGACAGATGGGGG----------CCTTTGT-----ACGAAATTCTGGGATCGCC 119202 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||| |||||| |||||||| || | ||| |||| |||||| ||||| || ||||| Sbjct 119201 GCCAGACAAACTACAGCGAAAGCATTTGCTAAGAATGTCTTCATTGATCAG-GAGCGAAA 119143 Query 311 GTTAG 315 || || Sbjct 119142 GTCAG 119138 >seq378 Length=296469 Score = 125 bits (138), Expect = 1e-26 Identities = 170/234 (73%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAG--CATG 131 ||||||||||| ||||| ||||| ||||||||| |||||| | | | ||| |||| Sbjct 199920 TTTACTTTGAACAAATTTGAGTGCCCAAAGCAGGACTTTGCGCCTAAAAATTCTTTCATG 199979 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 ||||||| ||||||| | | |||||||||||| |||| ||| ||| |||||| || Sbjct 199980 GAATAATGACATAGGACTT-CATTTCTATTTTGTTTGTTTTCAGGTCCGAAGTAATGGTT 200038 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAAT----TGTCAGAGGTGAAATTCTTGGATT 247 || | ||| || | ||| || | | || ||| |||| ||||||||| |||| Sbjct 200039 AAGACGGACAGACAAGGG---CATTTTGTAAGGTGATGTTAGAGATGAAATTCTAGGATC 200095 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 | |||| |||||| |||||| | || ||||| ||||||||||| | ||| Sbjct 200096 ACTGTCAGACAAACTACAGCGAAACCATTTGCCAAGAATGTTTTCATTGAACAG 200149 >seq1276 Length=59286 Score = 105 bits (116), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 88 ATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAG 145 ||| ||||| | |||| ||| || ||| | ||| | | |||||| |||| ||||| Sbjct 48807 ATTTGAGTGCTTAAAGTAGGTCTATGCGCCTGAAAATTTCCTCATGGAGTAATGAAATAG 48748 Query 146 GACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCG 205 ||| | || ||||||||||||||||| | | | | |||||| ||| || || || || Sbjct 48747 GACTT-CGCTTCTATTTTGTTGGTTT-TGGATCTGAAGTAATGGGTAAGAGAGACAGACG 48690 Query 206 GGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACT 265 ||| | |||| | ||| |||| ||||||||| |||| | |||| |||||| Sbjct 48689 GGGTCATTTGTATGGCAGTGTTAGAGATGAAATTCTGGGATCAACGCCAGACAAACTACA 48630 Query 266 GCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 |||||||| | |||||| ||| ||| ||| ||||| Sbjct 48629 GCGAAAGCACTTACCAAGAATGATTTAATTGATCAG 48594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914926959232