Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06-
09] 29,834 sequences; 375,894,156 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq564 136 7e-30
seq378 125 1e-26
seq1276 105 1e-20
>seq564
Length=206412
Score = 136 bits (150), Expect = 7e-30
Identities = 180/245 (73%), Gaps = 21/245 (9%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATG 131
||||||||||| ||||| ||||| ||||||||||||| ||| | ||| | | |||||
Sbjct 119364 TTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTGTGCGCCTGAAAATTATTGCATG 119305
Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGAT 190
||||||| |||||||| | |||||||||||||||||||| | ||| ||| |||||| |
Sbjct 119304 GAATAATGAAATAGGAC-TTCGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGT 119247
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| || ||||| | |||| |||||||| ||||
Sbjct 119246 TAAGAGGGACAGATGGGGG----------CCTTTGT-----ACGAAATTCTGGGATCGCC 119202
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
|||| |||||| |||||||| || | ||| |||| |||||| ||||| || |||||
Sbjct 119201 GCCAGACAAACTACAGCGAAAGCATTTGCTAAGAATGTCTTCATTGATCAG-GAGCGAAA 119143
Query 311 GTTAG 315
|| ||
Sbjct 119142 GTCAG 119138
>seq378
Length=296469
Score = 125 bits (138), Expect = 1e-26
Identities = 170/234 (73%), Gaps = 10/234 (4%)
Strand=Plus/Plus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAG--CATG 131
||||||||||| ||||| ||||| ||||||||| |||||| | | | ||| ||||
Sbjct 199920 TTTACTTTGAACAAATTTGAGTGCCCAAAGCAGGACTTTGCGCCTAAAAATTCTTTCATG 199979
Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191
||||||| ||||||| | | |||||||||||| |||| ||| ||| |||||| ||
Sbjct 199980 GAATAATGACATAGGACTT-CATTTCTATTTTGTTTGTTTTCAGGTCCGAAGTAATGGTT 200038
Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAAT----TGTCAGAGGTGAAATTCTTGGATT 247
|| | ||| || | ||| || | | || ||| |||| ||||||||| ||||
Sbjct 200039 AAGACGGACAGACAAGGG---CATTTTGTAAGGTGATGTTAGAGATGAAATTCTAGGATC 200095
Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301
| |||| |||||| |||||| | || ||||| ||||||||||| | |||
Sbjct 200096 ACTGTCAGACAAACTACAGCGAAACCATTTGCCAAGAATGTTTTCATTGAACAG 200149
>seq1276
Length=59286
Score = 105 bits (116), Expect = 1e-20
Identities = 155/216 (72%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 88 ATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAG 145
||| ||||| | |||| ||| || ||| | ||| | | |||||| |||| |||||
Sbjct 48807 ATTTGAGTGCTTAAAGTAGGTCTATGCGCCTGAAAATTTCCTCATGGAGTAATGAAATAG 48748
Query 146 GACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCG 205
||| | || ||||||||||||||||| | | | | |||||| ||| || || || ||
Sbjct 48747 GACTT-CGCTTCTATTTTGTTGGTTT-TGGATCTGAAGTAATGGGTAAGAGAGACAGACG 48690
Query 206 GGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACT 265
||| | |||| | ||| |||| ||||||||| |||| | |||| ||||||
Sbjct 48689 GGGTCATTTGTATGGCAGTGTTAGAGATGAAATTCTGGGATCAACGCCAGACAAACTACA 48630
Query 266 GCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301
|||||||| | |||||| ||| ||| ||| |||||
Sbjct 48629 GCGAAAGCACTTACCAAGAATGATTTAATTGATCAG 48594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914926959232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |