Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06-
09] 29,834 sequences; 375,894,156 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq125 136 2e-29
seq1273 116 2e-23
seq889 96.9 1e-17
seq226 95.1 5e-17
seq246 89.7 2e-15
>seq125
Length=553601
Score = 136 bits (150), Expect = 2e-29
Identities = 111/135 (82%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| |||||| || ||| |||||||||||||||||||||||| || ||| ||| |
Sbjct 335695 GAGCAAGAGCGTACACATTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAGG 335636
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||| ||||| |||||||||||||||| ||
Sbjct 335635 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACG 335576
Query 669 TGGGTATAGGGGCGA 683
|| | ||||||||||
Sbjct 335575 TGAGCATAGGGGCGA 335561
>seq1273
Length=59926
Score = 116 bits (128), Expect = 2e-23
Identities = 97/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624
|||| |||||||||||||||||||||||| || ||| ||||||||| |||||||||||
Sbjct 830 GTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAAGCCAGTGGAAACTCTGG 771
Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||||| || |||| | ||| ||| || ||| ||||| || || |||||| |||||
Sbjct 770 TGGAGGACCGTAGCGATCCTGACGTACACATCAATCGTATAAGGTGAGTATAGAGGCGA 712
>seq889
Length=112815
Score = 96.9 bits (106), Expect = 1e-17
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665
||||||||||||||||||||||||| || |||| ||||| |||||||||||||||| |
Sbjct 26013 AAGCCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATA 25954
Query 666 ATTTGGGTATAGGGGCGA 683
| || ||||||||||||
Sbjct 25953 ACGTGAGTATAGGGGCGA 25936
>seq226
Length=409397
Score = 95.1 bits (104), Expect = 5e-17
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
|||||||||| || ||| ||||| ||||||||||| | |||| || ||| |||||
Sbjct 256162 GAGTAAGAGCGTATACATTGAGACCCAAAAGATGGTGAGCCATGCTTGCGAAGGTTGAAG 256103
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
||||||| |||||| ||||||| || || | |||| ||||||||| ||||| ||
Sbjct 256102 CCAGAGGTAACTCTAGTGGAGGGCCGTAGTGATTCTCACGTGCAAATAAATCGTATAACG 256043
Query 669 TGGGTATAGGGGCGA 683
|| |||| |||||
Sbjct 256042 TGAGTATGTTGGCGA 256028
>seq246
Length=389547
Score = 89.7 bits (98), Expect = 2e-15
Identities = 81/102 (79%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| ||||| || |||| |||||||| |||| |||||||||| || ||| |||||
Sbjct 333743 GAGCAAGAGTGTACACGTTGAGACCCGAACGATGATGAACTATGCTTGTGAAGGTTGAAG 333684
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTG 650
||||||||||||||||| |||| || || | ||||| ||||
Sbjct 333683 CCAGAGGAAACTCTGGTTGAGGACCGTAGTGATTCTGACGTG 333642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079360060700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |