Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq125 136 2e-29 seq1273 116 2e-23 seq889 96.9 1e-17 seq226 95.1 5e-17 seq246 89.7 2e-15 >seq125 Length=553601 Score = 136 bits (150), Expect = 2e-29 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||| |||||||||||||||||||||||| || ||| ||| | Sbjct 335695 GAGCAAGAGCGTACACATTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAGG 335636 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||| || Sbjct 335635 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACG 335576 Query 669 TGGGTATAGGGGCGA 683 || | |||||||||| Sbjct 335575 TGAGCATAGGGGCGA 335561 >seq1273 Length=59926 Score = 116 bits (128), Expect = 2e-23 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||| |||||||||||||||||||||||| || ||| ||||||||| ||||||||||| Sbjct 830 GTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAAGCCAGTGGAAACTCTGG 771 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||| | ||| ||| || ||| ||||| || || |||||| ||||| Sbjct 770 TGGAGGACCGTAGCGATCCTGACGTACACATCAATCGTATAAGGTGAGTATAGAGGCGA 712 >seq889 Length=112815 Score = 96.9 bits (106), Expect = 1e-17 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 ||||||||||||||||||||||||| || |||| ||||| |||||||||||||||| | Sbjct 26013 AAGCCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATA 25954 Query 666 ATTTGGGTATAGGGGCGA 683 | || |||||||||||| Sbjct 25953 ACGTGAGTATAGGGGCGA 25936 >seq226 Length=409397 Score = 95.1 bits (104), Expect = 5e-17 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 |||||||||| || ||| ||||| ||||||||||| | |||| || ||| ||||| Sbjct 256162 GAGTAAGAGCGTATACATTGAGACCCAAAAGATGGTGAGCCATGCTTGCGAAGGTTGAAG 256103 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||||||| |||||| ||||||| || || | |||| ||||||||| ||||| || Sbjct 256102 CCAGAGGTAACTCTAGTGGAGGGCCGTAGTGATTCTCACGTGCAAATAAATCGTATAACG 256043 Query 669 TGGGTATAGGGGCGA 683 || |||| ||||| Sbjct 256042 TGAGTATGTTGGCGA 256028 >seq246 Length=389547 Score = 89.7 bits (98), Expect = 2e-15 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| ||||| || |||| |||||||| |||| |||||||||| || ||| ||||| Sbjct 333743 GAGCAAGAGTGTACACGTTGAGACCCGAACGATGATGAACTATGCTTGTGAAGGTTGAAG 333684 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTG 650 ||||||||||||||||| |||| || || | ||||| |||| Sbjct 333683 CCAGAGGAAACTCTGGTTGAGGACCGTAGTGATTCTGACGTG 333642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079360060700