Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06-
09] 29,834 sequences; 375,894,156 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq47 201 2e-49
seq564 163 5e-38
seq290 149 1e-33
seq77 132 8e-29
seq1072 131 3e-28
seq148 120 5e-25
seq1276 114 2e-23
seq159 114 2e-23
seq70 104 4e-20
seq8473 93.3 7e-17
seq1086 93.3 7e-17
seq34 91.5 2e-16
seq12697 89.7 8e-16
seq339 87.8 3e-15
seq937 78.8 1e-12
>seq47
Length=754565
Score = 201 bits (222), Expect = 2e-49
Identities = 218/284 (77%), Gaps = 30/284 (11%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
|||| |||| |||||| |||||||| |||| ||||| | || |||||||||||||||||
Sbjct 135641 ACTCACTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACGTCTAAGGGCATCACAGA 135700
Query 62 CCTGTTATTGCCTCAA---------ACTTCCATTG-GCTGGAAGC-CAATAGTCCCTCTA 110
||||||||| | || | |||| |||| || | | | || || || | |
Sbjct 135701 CCTGTTATTAC-TCGATTTCGTGCGACTTA-ATTGTGCCGCGACCACACTACCCCATA-A 135757
Query 111 AGAAGCCA-----GCCAC--------CAACCATAGTCGATGGGGCTA---TTTAGCAGGT 154
|||||| | ||| | | | || || || | ||| ||||||||||
Sbjct 135758 AGAAGCAATAGAAGCCGCGCTCTAAGCGAGCACAGAGGACCAGTCTACTATTTAGCAGGT 135817
Query 155 TAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 135818 TAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCC 135877
Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||| |||||||||||||||||||||||||||
Sbjct 135878 ATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 135921
>seq564
Length=206412
Score = 163 bits (180), Expect = 5e-38
Identities = 104/113 (92%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 118772 CTATTTAGTAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 118831
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254
||||||||| ||||||||||||| |||| |||||||||||| | ||||||||
Sbjct 118832 ACTAAGAACTGCCATGCACCACCGCCCACCGAATCAAGAAAGGGATATCAATC 118884
>seq290
Length=352303
Score = 149 bits (164), Expect = 1e-33
Identities = 93/100 (93%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||||||||||||||| |||||||||||||||| ||||||| |||||||||| ||||||
Sbjct 348468 GTCTCGTTCGTTATCGGCATTAACCAGACAAATCGCTCCACCGACTAAGAACGCCCATGC 348527
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||| |||||||| ||||||||||||||||||
Sbjct 348528 ACCACCACCCACCGAATCAAGCAAGAGCTATCAATCTGTC 348567
>seq77
Length=653045
Score = 132 bits (146), Expect = 8e-29
Identities = 76/78 (97%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 460025 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 460084
Query 202 ACTAAGAACGGCCATGCA 219
||||||||||||||||||
Sbjct 460085 ACTAAGAACGGCCATGCA 460102
Score = 98.7 bits (108), Expect = 2e-18
Identities = 68/76 (89%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| |||||| |||||||| |||| ||||| | ||||||||||||||||||||
Sbjct 459815 ACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACAGA 459874
Query 62 CCTGTTATTGCCTCAA 77
|||||||||| |||||
Sbjct 459875 CCTGTTATTG-CTCAA 459889
>seq1072
Length=83311
Score = 131 bits (144), Expect = 3e-28
Identities = 86/95 (91%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223
|||| ||||||| | |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 28569 GTTCCTTATCGGGACTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCAC 28628
Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||| ||| ||||||| |||||||| ||||||
Sbjct 28629 CACCCACCGAACCAAGAAAAAGCTATCAGTCTGTC 28663
>seq148
Length=510417
Score = 120 bits (132), Expect = 5e-25
Identities = 71/74 (96%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 448517 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 448576
Query 202 ACTAAGAACGGCCA 215
|||||| |||||||
Sbjct 448577 ACTAAGGACGGCCA 448590
Score = 98.7 bits (108), Expect = 2e-18
Identities = 68/76 (89%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| |||||| |||||||| |||| ||||| | ||||||||||||||||||||
Sbjct 448307 ACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACAGA 448366
Query 62 CCTGTTATTGCCTCAA 77
|||||||||| |||||
Sbjct 448367 CCTGTTATTG-CTCAA 448381
>seq1276
Length=59286
Score = 114 bits (126), Expect = 2e-23
Identities = 80/91 (88%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 168 GTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 227
|||||||||||||||| |||||||| || ||| ||||||||| ||| |||||||||||||
Sbjct 48260 GTTATCGGAATTAACCGGACAAATCGCTACACTAACTAAGAATGGCTATGCACCACCACC 48319
Query 228 CATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|| ||||| ||||||||||||||| ||||
Sbjct 48320 CACTGAATCGGGAAAGAGCTATCAATTTGTC 48350
>seq159
Length=498365
Score = 114 bits (126), Expect = 2e-23
Identities = 77/86 (90%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 170 TATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229
||||||| |||||||||||||| ||||||||| ||||||||||||||||||| ||||||
Sbjct 341503 TATCGGAGTTAACCAGACAAATTGCTCCACCAAATAAGAACGGCCATGCACCATCACCCA 341444
Query 230 TAGAATCAAGAAAGAGCTATCAATCT 255
|||| ||||||||||| |||||||
Sbjct 341443 CCGAATTAAGAAAGAGCTGTCAATCT 341418
>seq70
Length=672719
Score = 104 bits (114), Expect = 4e-20
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||| ||||| | |||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 238185 CTATTTAGGAGGTTTAAGTCTCGTTCGTTATCGAAATTAACCGGACAAATCGCTCCACCA 238244
Query 202 ACTAAGAACGGCCAT 216
|||||||||||| ||
Sbjct 238245 ACTAAGAACGGCTAT 238259
>seq8473
Length=880
Score = 93.3 bits (102), Expect = 7e-17
Identities = 62/69 (90%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202
|||||||||| |||| ||||||||||||| ||||| ||||||||| |||||| ||||||
Sbjct 472 TATTTAGCAGTTTAAAGTCTCGTTCGTTACCGGAACTAACCAGACGAATCACCTCACCAA 531
Query 203 CTAAGAACG 211
|||||||||
Sbjct 532 CTAAGAACG 540
>seq1086
Length=81274
Score = 93.3 bits (102), Expect = 7e-17
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGT-CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200
||||||| |||||||| || || ||| || ||||||||||||||||||| || |||||||
Sbjct 64171 CTATTTATCAGGTTAAAGTTCTTGTTTGTCATCGGAATTAACCAGACAAGTCGCTCCACC 64230
Query 201 AACTAAGAACGGCCAT 216
|||||| |||||||||
Sbjct 64231 AACTAAAAACGGCCAT 64246
Score = 78.8 bits (86), Expect = 1e-12
Identities = 66/77 (86%), Gaps = 3/77 (4%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGC-CCAGAACATCTAAGGGCATCACAG 60
||||| |||| |||||| |||||||| |||| | | ||||| ||||||||||||||||||
Sbjct 63962 ACTCGTTGGCACCGTCATTGTAGCGCACGTGTGTCTCCAGA-CATCTAAGGGCATCACAG 64020
Query 61 ACCTGTTATTGCCTCAA 77
|| ||||||| |||||
Sbjct 64021 ACGCGTTATTG-CTCAA 64036
>seq34
Length=857119
Score = 91.5 bits (100), Expect = 2e-16
Identities = 74/90 (82%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228
|| ||||||||| | || |||| || ||||||| ||||| || || ||||||||||
Sbjct 498034 TTGTCGGAATTACCTGGAAAAATTGCTGCACCAACAAAGAATGGTTATACACCACCACCG 497975
Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|| ||||||||||||||||||||||||||
Sbjct 497974 ATTAAATCAAGAAAGAGCTATCAATCTGTC 497945
>seq12697
Length=530
Score = 89.7 bits (98), Expect = 8e-16
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||||||||||| | | ||||||||||||||| |||||||||||||||||||| || |
Sbjct 506 CTATTTAGCAGATCGACGTCTCGTTCGTTATCAGAATTAACCAGACAAATCACCTCA-AA 448
Query 202 ACTAAGAACGGCCATG 217
||||||||||| ||||
Sbjct 447 ACTAAGAACGGTCATG 432
>seq339
Length=321800
Score = 87.8 bits (96), Expect = 3e-15
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||||||||||| |||| ||| ||| | |||| ||||||| ||||| ||||||||
Sbjct 24051 CTATTTAGCAGGTTAAAGTCTTGTTTGTTGTTAGAATCAACCAGATAAATCGCTCCACCA 23992
Query 202 ACTAAGAACGGCCATGCA 219
||||| || |||||| ||
Sbjct 23991 ACTAAAAATGGCCATCCA 23974
>seq937
Length=103887
Score = 78.8 bits (86), Expect = 1e-12
Identities = 57/66 (86%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| |||||| |||||||| |||| | ||| | ||||||||||||||||||||
Sbjct 29003 ACTCGCTGGCGCCGTCATTGTAGCGCTCGTGTGACCCCGGACATCTAAGGGCATCACAGA 29062
Query 62 CCTGTT 67
||| ||
Sbjct 29063 CCTATT 29068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796569711354
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |