Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq47 201 2e-49 seq564 163 5e-38 seq290 149 1e-33 seq77 132 8e-29 seq1072 131 3e-28 seq148 120 5e-25 seq1276 114 2e-23 seq159 114 2e-23 seq70 104 4e-20 seq8473 93.3 7e-17 seq1086 93.3 7e-17 seq34 91.5 2e-16 seq12697 89.7 8e-16 seq339 87.8 3e-15 seq937 78.8 1e-12 >seq47 Length=754565 Score = 201 bits (222), Expect = 2e-49 Identities = 218/284 (77%), Gaps = 30/284 (11%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 |||| |||| |||||| |||||||| |||| ||||| | || ||||||||||||||||| Sbjct 135641 ACTCACTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACGTCTAAGGGCATCACAGA 135700 Query 62 CCTGTTATTGCCTCAA---------ACTTCCATTG-GCTGGAAGC-CAATAGTCCCTCTA 110 ||||||||| | || | |||| |||| || | | | || || || | | Sbjct 135701 CCTGTTATTAC-TCGATTTCGTGCGACTTA-ATTGTGCCGCGACCACACTACCCCATA-A 135757 Query 111 AGAAGCCA-----GCCAC--------CAACCATAGTCGATGGGGCTA---TTTAGCAGGT 154 |||||| | ||| | | | || || || | ||| |||||||||| Sbjct 135758 AGAAGCAATAGAAGCCGCGCTCTAAGCGAGCACAGAGGACCAGTCTACTATTTAGCAGGT 135817 Query 155 TAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214 ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 135818 TAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCC 135877 Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 135878 ATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 135921 >seq564 Length=206412 Score = 163 bits (180), Expect = 5e-38 Identities = 104/113 (92%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 118772 CTATTTAGTAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 118831 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||||||| ||||||||||||| |||| |||||||||||| | |||||||| Sbjct 118832 ACTAAGAACTGCCATGCACCACCGCCCACCGAATCAAGAAAGGGATATCAATC 118884 >seq290 Length=352303 Score = 149 bits (164), Expect = 1e-33 Identities = 93/100 (93%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||||||| |||||||||||||||| ||||||| |||||||||| |||||| Sbjct 348468 GTCTCGTTCGTTATCGGCATTAACCAGACAAATCGCTCCACCGACTAAGAACGCCCATGC 348527 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||||| |||||||||||||||||| Sbjct 348528 ACCACCACCCACCGAATCAAGCAAGAGCTATCAATCTGTC 348567 >seq77 Length=653045 Score = 132 bits (146), Expect = 8e-29 Identities = 76/78 (97%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 460025 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 460084 Query 202 ACTAAGAACGGCCATGCA 219 |||||||||||||||||| Sbjct 460085 ACTAAGAACGGCCATGCA 460102 Score = 98.7 bits (108), Expect = 2e-18 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| |||||||| |||| ||||| | |||||||||||||||||||| Sbjct 459815 ACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACAGA 459874 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 459875 CCTGTTATTG-CTCAA 459889 >seq1072 Length=83311 Score = 131 bits (144), Expect = 3e-28 Identities = 86/95 (91%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 |||| ||||||| | |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 28569 GTTCCTTATCGGGACTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCAC 28628 Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| ||| ||||||| |||||||| |||||| Sbjct 28629 CACCCACCGAACCAAGAAAAAGCTATCAGTCTGTC 28663 >seq148 Length=510417 Score = 120 bits (132), Expect = 5e-25 Identities = 71/74 (96%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 448517 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 448576 Query 202 ACTAAGAACGGCCA 215 |||||| ||||||| Sbjct 448577 ACTAAGGACGGCCA 448590 Score = 98.7 bits (108), Expect = 2e-18 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| |||||||| |||| ||||| | |||||||||||||||||||| Sbjct 448307 ACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACAGA 448366 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 448367 CCTGTTATTG-CTCAA 448381 >seq1276 Length=59286 Score = 114 bits (126), Expect = 2e-23 Identities = 80/91 (88%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 168 GTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 227 |||||||||||||||| |||||||| || ||| ||||||||| ||| ||||||||||||| Sbjct 48260 GTTATCGGAATTAACCGGACAAATCGCTACACTAACTAAGAATGGCTATGCACCACCACC 48319 Query 228 CATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||||| ||||||||||||||| |||| Sbjct 48320 CACTGAATCGGGAAAGAGCTATCAATTTGTC 48350 >seq159 Length=498365 Score = 114 bits (126), Expect = 2e-23 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 170 TATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 ||||||| |||||||||||||| ||||||||| ||||||||||||||||||| |||||| Sbjct 341503 TATCGGAGTTAACCAGACAAATTGCTCCACCAAATAAGAACGGCCATGCACCATCACCCA 341444 Query 230 TAGAATCAAGAAAGAGCTATCAATCT 255 |||| ||||||||||| ||||||| Sbjct 341443 CCGAATTAAGAAAGAGCTGTCAATCT 341418 >seq70 Length=672719 Score = 104 bits (114), Expect = 4e-20 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| ||||| | |||||||||||||||| |||||||| |||||||| |||||||| Sbjct 238185 CTATTTAGGAGGTTTAAGTCTCGTTCGTTATCGAAATTAACCGGACAAATCGCTCCACCA 238244 Query 202 ACTAAGAACGGCCAT 216 |||||||||||| || Sbjct 238245 ACTAAGAACGGCTAT 238259 >seq8473 Length=880 Score = 93.3 bits (102), Expect = 7e-17 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 |||||||||| |||| ||||||||||||| ||||| ||||||||| |||||| |||||| Sbjct 472 TATTTAGCAGTTTAAAGTCTCGTTCGTTACCGGAACTAACCAGACGAATCACCTCACCAA 531 Query 203 CTAAGAACG 211 ||||||||| Sbjct 532 CTAAGAACG 540 >seq1086 Length=81274 Score = 93.3 bits (102), Expect = 7e-17 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGT-CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 ||||||| |||||||| || || ||| || ||||||||||||||||||| || ||||||| Sbjct 64171 CTATTTATCAGGTTAAAGTTCTTGTTTGTCATCGGAATTAACCAGACAAGTCGCTCCACC 64230 Query 201 AACTAAGAACGGCCAT 216 |||||| ||||||||| Sbjct 64231 AACTAAAAACGGCCAT 64246 Score = 78.8 bits (86), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 3/77 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGC-CCAGAACATCTAAGGGCATCACAG 60 ||||| |||| |||||| |||||||| |||| | | ||||| |||||||||||||||||| Sbjct 63962 ACTCGTTGGCACCGTCATTGTAGCGCACGTGTGTCTCCAGA-CATCTAAGGGCATCACAG 64020 Query 61 ACCTGTTATTGCCTCAA 77 || ||||||| ||||| Sbjct 64021 ACGCGTTATTG-CTCAA 64036 >seq34 Length=857119 Score = 91.5 bits (100), Expect = 2e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 || ||||||||| | || |||| || ||||||| ||||| || || |||||||||| Sbjct 498034 TTGTCGGAATTACCTGGAAAAATTGCTGCACCAACAAAGAATGGTTATACACCACCACCG 497975 Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||||||||||||||||||||||||| Sbjct 497974 ATTAAATCAAGAAAGAGCTATCAATCTGTC 497945 >seq12697 Length=530 Score = 89.7 bits (98), Expect = 8e-16 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||||||| | | ||||||||||||||| |||||||||||||||||||| || | Sbjct 506 CTATTTAGCAGATCGACGTCTCGTTCGTTATCAGAATTAACCAGACAAATCACCTCA-AA 448 Query 202 ACTAAGAACGGCCATG 217 ||||||||||| |||| Sbjct 447 ACTAAGAACGGTCATG 432 >seq339 Length=321800 Score = 87.8 bits (96), Expect = 3e-15 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||| ||| ||| | |||| ||||||| ||||| |||||||| Sbjct 24051 CTATTTAGCAGGTTAAAGTCTTGTTTGTTGTTAGAATCAACCAGATAAATCGCTCCACCA 23992 Query 202 ACTAAGAACGGCCATGCA 219 ||||| || |||||| || Sbjct 23991 ACTAAAAATGGCCATCCA 23974 >seq937 Length=103887 Score = 78.8 bits (86), Expect = 1e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| |||||||| |||| | ||| | |||||||||||||||||||| Sbjct 29003 ACTCGCTGGCGCCGTCATTGTAGCGCTCGTGTGACCCCGGACATCTAAGGGCATCACAGA 29062 Query 62 CCTGTT 67 ||| || Sbjct 29063 CCTATT 29068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796569711354