Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06-
09] 29,834 sequences; 375,894,156 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq1689 248 1e-63
seq227 192 1e-46
seq130 188 1e-45
seq3686 167 4e-39
seq153 154 3e-35
seq106 141 2e-31
seq441 140 6e-31
seq81 100 5e-19
seq1005 77.0 6e-12
>seq1689
Length=29924
Score = 248 bits (274), Expect = 1e-63
Identities = 172/195 (88%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 20641 TCATTGGTAGGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCACGTTCCCTA 20700
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||| ||||||||||||||||| ||||||| |||| || |||| || ||||||
Sbjct 20701 TTAGTGGATGAACAATCCAACGCTTGGTGAATTCTACTTCACAATCATAGAAACAGCCGA 20760
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||||||||||||||||| | ||||||||||||||||||||| ||||||||| |||||||
Sbjct 20761 CATCGAAGGATCAAAAAACGACGTCGCTATGAACGCTTGGCCGCCACAAGCTAGTTATCA 20820
Query 211 CTGTGGTAACTTTTC 225
||||||| | ||||
Sbjct 20821 CTGTGGTGCCCTTTC 20835
>seq227
Length=409313
Score = 192 bits (212), Expect = 1e-46
Identities = 139/161 (86%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| |||| |||||||||||||||||||| | ||||||||| | ||||| ||||| |
Sbjct 279998 TCATTAGTATGGTAAAACTAACCTGTCTCACGGTGGTCTAAACTTAACTCACTTTCCCCA 280057
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||||||||| |||||| ||||| ||||||| ||||||| |
Sbjct 280058 TTAGTGGGTGAACAATCCAACGCTTGATGAATTCCGCTTCACAATGATAGAAAGAGCCAA 280117
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGC 191
|||| |||||| ||||||| |||||||||||||||||||||
Sbjct 280118 CATCAAAGGATTAAAAAGCGACGTCGCTATGAACGCTTGGC 280158
>seq130
Length=541213
Score = 188 bits (208), Expect = 1e-45
Identities = 116/124 (94%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 21963 CATTAGTAGGGTAAAACTAACCTGTCTCATGACGGTGTAAACCCAGCTCACGTTCCCTAT 22022
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 22023 TAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGAC 22082
Query 152 ATCG 155
||||
Sbjct 22083 ATCG 22086
>seq3686
Length=2313
Score = 167 bits (184), Expect = 4e-39
Identities = 104/112 (93%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1110 TCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAA 1051
Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217
|||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1050 AAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGT 999
>seq153
Length=504212
Score = 154 bits (170), Expect = 3e-35
Identities = 114/133 (86%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| |||| ||||||||||||||| |||| | ||||||||||||| ||||||||||||
Sbjct 447937 TCATTAGTAAGGTAAAACTAACCTGCCTCACAATGGTCTAAACCCAGTTCACGTTCCCTA 447996
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||||| || |||||||||||| || ||| ||| ||||||
Sbjct 447997 TTAGTGGGTGAACAATCCAACATTTGGTGAATTCTGCTTCACAATAATAAGAATAGCCGA 448056
Query 151 CATCGAAGGATCA 163
||||||||||||
Sbjct 448057 TATCGAAGGATCA 448069
>seq106
Length=574596
Score = 141 bits (156), Expect = 2e-31
Identities = 113/136 (83%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| ||||||| | ||||||||||| ||| ||| ||||||| ||||||||||||||||
Sbjct 224647 TCATTAGTAGGGCATAACTAACCTGTTTCACAACGATCTAAACTCAGCTCACGTTCCCTA 224706
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||| | || ||||||| |||| ||| |||||||| | ||
Sbjct 224707 ATAGTGGGTGAACAATCCAAAGTTTGGTGAATTCTACTTCACAATGCTAGGAAGATCTGA 224766
Query 151 CATCGAAGGATCAAAA 166
| ||||| ||||||||
Sbjct 224767 CGTCGAAAGATCAAAA 224782
>seq441
Length=262647
Score = 140 bits (154), Expect = 6e-31
Identities = 109/129 (84%), Gaps = 2/129 (2%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| | || |||||||||||||||||||||||||||| | ||||||||| |||||| |
Sbjct 86922 TCATTATTAAGGTAAAACTAACCTGTCTCATGACGGTC--AGCCCAGCTCATGTTCCCAA 86865
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||| ||||| ||| |||||||||||| |||| ||||||||| |
Sbjct 86864 TTAGTGGGTGAACAAACCAACACTTGGTGAATTCTGCTTCACAGTGATTGGAAGAGCCTA 86805
Query 151 CATCGAAGG 159
||||||||
Sbjct 86804 TATCGAAGG 86796
>seq81
Length=647123
Score = 100 bits (110), Expect = 5e-19
Identities = 64/70 (91%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198
||||||||||| |||||||||||||||||| | ||||||||||| |||||||| |||||
Sbjct 176306 AGGAAGAGCCGGTATCGAAGGATCAAAAAGCGATGTCGCTATGAATGCTTGGCTACCACA 176365
Query 199 AGCCAGTTAT 208
||||||||||
Sbjct 176366 AGCCAGTTAT 176375
>seq1005
Length=92711
Score = 77.0 bits (84), Expect = 6e-12
Identities = 85/112 (76%), Gaps = 1/112 (1%)
Strand=Plus/Minus
Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165
||| |||||||| ||| | || ||| ||||| | | ||| ||||| || || |||
Sbjct 19886 TCCGACGCTTACTGAACTATGTTTCACAATGATGGTTATTGCCAACATCAAAAAATTAAA 19827
Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217
|| | ||||||| | |||||||||| ||||||||||| ||| | |||||||
Sbjct 19826 AA-CGACGTCGCCAAGAACGCTTGGTAGCCACAAGCCAATTACCACTGTGGT 19776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854145098304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |