Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1689 248 1e-63 seq227 192 1e-46 seq130 188 1e-45 seq3686 167 4e-39 seq153 154 3e-35 seq106 141 2e-31 seq441 140 6e-31 seq81 100 5e-19 seq1005 77.0 6e-12 >seq1689 Length=29924 Score = 248 bits (274), Expect = 1e-63 Identities = 172/195 (88%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| |||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 20641 TCATTGGTAGGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCACGTTCCCTA 20700 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||| ||||||||||||||||| ||||||| |||| || |||| || |||||| Sbjct 20701 TTAGTGGATGAACAATCCAACGCTTGGTGAATTCTACTTCACAATCATAGAAACAGCCGA 20760 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||| | ||||||||||||||||||||| ||||||||| ||||||| Sbjct 20761 CATCGAAGGATCAAAAAACGACGTCGCTATGAACGCTTGGCCGCCACAAGCTAGTTATCA 20820 Query 211 CTGTGGTAACTTTTC 225 ||||||| | |||| Sbjct 20821 CTGTGGTGCCCTTTC 20835 >seq227 Length=409313 Score = 192 bits (212), Expect = 1e-46 Identities = 139/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| |||| |||||||||||||||||||| | ||||||||| | ||||| ||||| | Sbjct 279998 TCATTAGTATGGTAAAACTAACCTGTCTCACGGTGGTCTAAACTTAACTCACTTTCCCCA 280057 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||| ||||| ||||||| ||||||| | Sbjct 280058 TTAGTGGGTGAACAATCCAACGCTTGATGAATTCCGCTTCACAATGATAGAAAGAGCCAA 280117 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGC 191 |||| |||||| ||||||| ||||||||||||||||||||| Sbjct 280118 CATCAAAGGATTAAAAAGCGACGTCGCTATGAACGCTTGGC 280158 >seq130 Length=541213 Score = 188 bits (208), Expect = 1e-45 Identities = 116/124 (94%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 21963 CATTAGTAGGGTAAAACTAACCTGTCTCATGACGGTGTAAACCCAGCTCACGTTCCCTAT 22022 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 22023 TAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGAC 22082 Query 152 ATCG 155 |||| Sbjct 22083 ATCG 22086 >seq3686 Length=2313 Score = 167 bits (184), Expect = 4e-39 Identities = 104/112 (93%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1110 TCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAA 1051 Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217 |||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1050 AAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGT 999 >seq153 Length=504212 Score = 154 bits (170), Expect = 3e-35 Identities = 114/133 (86%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| |||| ||||||||||||||| |||| | ||||||||||||| |||||||||||| Sbjct 447937 TCATTAGTAAGGTAAAACTAACCTGCCTCACAATGGTCTAAACCCAGTTCACGTTCCCTA 447996 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| || |||||||||||| || ||| ||| |||||| Sbjct 447997 TTAGTGGGTGAACAATCCAACATTTGGTGAATTCTGCTTCACAATAATAAGAATAGCCGA 448056 Query 151 CATCGAAGGATCA 163 |||||||||||| Sbjct 448057 TATCGAAGGATCA 448069 >seq106 Length=574596 Score = 141 bits (156), Expect = 2e-31 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||||| | ||||||||||| ||| ||| ||||||| |||||||||||||||| Sbjct 224647 TCATTAGTAGGGCATAACTAACCTGTTTCACAACGATCTAAACTCAGCTCACGTTCCCTA 224706 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||| | || ||||||| |||| ||| |||||||| | || Sbjct 224707 ATAGTGGGTGAACAATCCAAAGTTTGGTGAATTCTACTTCACAATGCTAGGAAGATCTGA 224766 Query 151 CATCGAAGGATCAAAA 166 | ||||| |||||||| Sbjct 224767 CGTCGAAAGATCAAAA 224782 >seq441 Length=262647 Score = 140 bits (154), Expect = 6e-31 Identities = 109/129 (84%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| | || |||||||||||||||||||||||||||| | ||||||||| |||||| | Sbjct 86922 TCATTATTAAGGTAAAACTAACCTGTCTCATGACGGTC--AGCCCAGCTCATGTTCCCAA 86865 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||| ||||| ||| |||||||||||| |||| ||||||||| | Sbjct 86864 TTAGTGGGTGAACAAACCAACACTTGGTGAATTCTGCTTCACAGTGATTGGAAGAGCCTA 86805 Query 151 CATCGAAGG 159 |||||||| Sbjct 86804 TATCGAAGG 86796 >seq81 Length=647123 Score = 100 bits (110), Expect = 5e-19 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198 ||||||||||| |||||||||||||||||| | ||||||||||| |||||||| ||||| Sbjct 176306 AGGAAGAGCCGGTATCGAAGGATCAAAAAGCGATGTCGCTATGAATGCTTGGCTACCACA 176365 Query 199 AGCCAGTTAT 208 |||||||||| Sbjct 176366 AGCCAGTTAT 176375 >seq1005 Length=92711 Score = 77.0 bits (84), Expect = 6e-12 Identities = 85/112 (76%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 ||| |||||||| ||| | || ||| ||||| | | ||| ||||| || || ||| Sbjct 19886 TCCGACGCTTACTGAACTATGTTTCACAATGATGGTTATTGCCAACATCAAAAAATTAAA 19827 Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217 || | ||||||| | |||||||||| ||||||||||| ||| | ||||||| Sbjct 19826 AA-CGACGTCGCCAAGAACGCTTGGTAGCCACAAGCCAATTACCACTGTGGT 19776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854145098304