Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq77 95.1 7e-18 seq290 91.5 9e-17 seq148 86.0 4e-15 seq937 82.4 5e-14 seq47 82.4 5e-14 seq564 75.2 7e-12 seq590 73.4 2e-11 seq57 73.4 2e-11 seq1086 71.6 8e-11 >seq77 Length=653045 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 459629 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 459686 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 459687 TAAT-CAGCGCAAGCT 459701 >seq290 Length=352303 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||| ||||||| Sbjct 348257 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGTAGGGACG 348314 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 348315 TAAT-CAGCGCAAGCT 348329 >seq148 Length=510417 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| |||||| |||| |||||||||||||||||||| Sbjct 448120 CTCACTAAATCATT-CAATCGGTAGTA-GCGACGAGCGGTGTGTACAAAGGGCAGGGACG 448177 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 448178 TAAT-CAGCGCAAGCT 448192 >seq937 Length=103887 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || || ||||| ||||||||||| |||||||||||||||||||| Sbjct 28827 CTCACTAAACCATT-CAGTCAGTAGTG-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 28884 Query 109 TAATACAACGCAAGCT 124 |||| || || ||||| Sbjct 28885 TAAT-CAGCGTAAGCT 28899 >seq47 Length=754565 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||| || ||||||||| ||||||||||| |||||||| Sbjct 135455 CTCACTAAACCATT-CAATCGGTAGAAA-CGACGGGCGTTGTGTACAAAGGCCAGGGACG 135512 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 135513 TAAT-CAGCGCAAGCT 135527 >seq564 Length=206412 Score = 75.2 bits (82), Expect = 7e-12 Identities = 77/96 (80%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 29 CAAAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGG 88 |||||||| | | || | |||||||| ||||| || ||| ||||| ||||||||||| Sbjct 118541 CAAAGCCACTAC--AACGACCTCACTAAACCATT-CAGTCGATAGTA-GCGACGGGCGGT 118596 Query 89 GTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| ||||| || | |||||||| Sbjct 118597 GTGTACAAAGGGCAACGACGTGAT-TAGCGCAAGCT 118631 >seq590 Length=198687 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || |||||||| || ||||| || |||||||||| ||||||||| Sbjct 144114 CTCACTAAACCATTCGAT-CGGTAGTA-GCAACGGGTGGTGTGTACAAAGAGCAGGGACG 144171 Query 109 TAATACAACGCAAGCT 124 |||| || ||||||| Sbjct 144172 TAAT-CAGTGCAAGCT 144186 >seq57 Length=720268 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| || || ||||| |||| |||||||||||||| Sbjct 708231 CTCACTAAACCATT-CAATCGGTAGTA-GCAACTGGCGGTGTGTTCAAAGGGCAGGGACA 708174 Query 109 TAATACAACGCAAGCT 124 |||| || | |||||| Sbjct 708173 TAAT-CAGCACAAGCT 708159 >seq1086 Length=81274 Score = 71.6 bits (78), Expect = 8e-11 Identities = 54/61 (89%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 64 CATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGC 123 || ||||||||| |||| |||||| ||||||||||||||||||| |||| || ||||||| Sbjct 63797 CAATCGGTAGTA-GCGATGGGCGGTGTGTACAAAGGGCAGGGACATAAT-CAGCGCAAGC 63854 Query 124 T 124 | Sbjct 63855 T 63855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300715868120