Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq564 93.3 4e-17 seq378 75.2 1e-11 >seq564 Length=206412 Score = 93.3 bits (102), Expect = 4e-17 Identities = 106/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC--GAATACATTACCATG 70 ||||||||||| ||||| ||| | ||||||||||||| ||| | ||| | | |||| Sbjct 119364 TTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTGTGCGCCTGAAAATTATTGCATG 119305 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| |||||||| | |||||||||||||| ||||| | ||| | |||||| | Sbjct 119304 GAATAATGAAATAGGAC-TTCGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGT 119247 Query 131 AAATACGGATAGTCGGGGG 149 || | ||| || ||||| Sbjct 119246 TAAGAGGGACAGATGGGGG 119228 >seq378 Length=296469 Score = 75.2 bits (82), Expect = 1e-11 Identities = 98/132 (74%), Gaps = 4/132 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACAT--TACCATG 70 ||||||||||| ||||| ||| | ||||||||| |||||| | | | || | |||| Sbjct 199920 TTTACTTTGAACAAATTTGAGTGCCCAAAGCAGGACTTTGCGCCTAAAAATTCTTTCATG 199979 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| ||||||| | | ||||||||||| |||| ||| ||| |||||| | Sbjct 199980 GAATAATGACATAGGAC-TTCATTTCTATTTTGTTTGTTTTCAGGTCCG-AAGTAATGGT 200037 Query 131 AAATACGGATAG 142 || ||||| || Sbjct 200038 TAAGACGGACAG 200049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511852023360