Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq77 187 5e-45 seq47 138 2e-30 seq1086 132 9e-29 seq629 127 4e-27 seq937 125 1e-26 seq148 109 1e-21 seq290 96.9 7e-18 seq70 95.1 2e-17 seq339 89.7 1e-15 >seq77 Length=653045 Score = 187 bits (206), Expect = 5e-45 Identities = 201/262 (77%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| | |||| || || || ||| || ||| ||||||||||||| Sbjct 459929 CTTCTTAGAGGGACAAGCGGCACACTTAAGTCGCACGAAATT-GAG-CAATAACAGGTCT 459872 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187 ||||||||||||||||| | ||||| |||| |||||||| |||| | |||| ||||| Sbjct 459871 GTGATGCCCTTAGATGTCCGGGGCCACACGTGCGCTACAATGACGGTGCCAGCGAGTCTG 459812 Query 188 TCACCTTGGC-CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 | | |||| || |||| |||| || || || | | | |||||| ||||| | | Sbjct 459811 GGAACCTGGCTCGAAAGGGTTGGGCAAACTGTTTCATCACCGTCGTGACTGGGATCGGGG 459752 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 ||||||||||| | | | |||||||||| ||| ||||| || ||||| ||| ||| | Sbjct 459751 CTTGCAATTATTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCT 459692 Query 307 GATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||||| Sbjct 459691 GATTACGTCCCTGCCCTTTGTA 459670 >seq47 Length=754565 Score = 138 bits (152), Expect = 2e-30 Identities = 162/215 (75%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 116 AATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAG 175 |||||||||||||||||||||||||| || | ||||| |||| |||||||| |||| | | Sbjct 135709 AATAACAGGTCTGTGATGCCCTTAGACGTCCGGGGCCACACGTGCGCTACAATGACGGTG 135650 Query 176 CCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGT-AATCTTGTTAAACTCTGTCGTG- 233 ||| |||| | | ||||| |||| | | ||| || || || | | | ||||| Sbjct 135649 CCAGTGAGTCTGGAAACCTGGCCCGAAGATGTTGGTCAAACTGTTTCATCGCCATCGTGA 135590 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 ||||| | || | ||||||||| | ||| |||||||||| || || || || ||| Sbjct 135589 CTGGGCTCATGGC-TCGCAATTATTCCCCTTGAACGAGGAATTCCCGGTCAGTGCAAGTC 135531 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| ||| |||||||||||||| |||||||| Sbjct 135530 ATAAGCTTGCGCTGATTACGTCCCTGGCCTTTGTA 135496 >seq1086 Length=81274 Score = 132 bits (146), Expect = 9e-29 Identities = 193/264 (73%), Gaps = 18/264 (7%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC----TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| | || | | ||| | ||| || ||| ||||||| |||| Sbjct 64076 CTTCTTAGAGGGACAAGCGTCATATTTAAGTGGCACGAAATT-GAG-CAATAACGCGTCT 64019 Query 128 GTGATGCCCTTAGATGTTCTGG-GCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-T 185 |||||||||||||||| ||||| | | |||| |||||||| |||| | |||||||||| | Sbjct 64018 GTGATGCCCTTAGATG-TCTGGAGACACACGTGCGCTACAATGACGGTGCCAACGAGTCT 63960 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG-CTGGGGATAGA 244 | |||| |||||| |||| |||| || || || | | ||||| |||||| Sbjct 63959 GACCACC-TGGCCGAAAGGGTTGGGCAAACTGTTTCATCAAGTTCGTGACTGGGG----- 63906 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 ||||||||| | | | | || ||||||| ||| |||| | |||| ||| ||| Sbjct 63905 --TTTGCAATTAATCCCCGTGAATGAGGAATTCCTGGTAAATGTAACTCATAAGCTTGCG 63848 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||||| |||||||||||||||| Sbjct 63847 CTGATTATGTCCCTGCCCTTTGTA 63824 >seq629 Length=181732 Score = 127 bits (140), Expect = 4e-27 Identities = 162/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| |||||||| |||||| ||||| |||||||| | || || |||| |||||||| | Sbjct 104010 TTGAG-CAATAACATGTCTGTAATGCCGTTAGATGTCCGGGACCACACGTGCGCTACAAT 104068 Query 169 GACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT 227 ||||| |||||||||| | |||| | ||| |||| | || || | || | | | Sbjct 104069 GACAGTGCCAACGAGTCTGGAAACCTGGCCCGAAAGGGTTTGGCAAATTGTTTCATCACA 104128 Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 |||||| ||||| | | ||||||||||| | | | |||||||||| ||| ||||| | Sbjct 104129 GTCGTGACTGGGATCGGGGCTTGCAATTATTCCCCGTGAACGAGGAATTCCTGGTAAGTG 104188 Query 288 CGTGTCATCAGC-ACGCGTTGATTACGTCCCTGCCCTTT 325 | ||||| | | | ||||| ||||||| |||||| Sbjct 104189 CAAGTCATAAACTTTGATCTGATTGCGTCCCTACCCTTT 104227 >seq937 Length=103887 Score = 125 bits (138), Expect = 1e-26 Identities = 155/211 (73%), Gaps = 11/211 (5%) Strand=Plus/Minus Query 119 AACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCA 178 || ||||||||||||||||||||||| | ||| | |||| |||||||| |||| | |||| Sbjct 29068 AATAGGTCTGTGATGCCCTTAGATGTCCGGGGTCACACGAGCGCTACAATGACGGCGCCA 29009 Query 179 ACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGG 237 ||||| | |||| | ||| |||| |||| | | || | | || | Sbjct 29008 GCGAGTCTGGAAACCTGGCCCGAAAGGGGTGGGCAGTACCGTCA---------GGACTAG 28958 Query 238 GGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCA 297 | || || ||||||||||| ||| | |||||||||| ||| ||||| || ||||| | Sbjct 28957 GATCAGGGC-TTGCAATTATTCCTCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAA 28899 Query 298 GCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || || ||||||||||||||||||||||| Sbjct 28898 GCTTACGCTGATTACGTCCCTGCCCTTTGTA 28868 >seq148 Length=510417 Score = 109 bits (120), Expect = 1e-21 Identities = 127/167 (76%), Gaps = 7/167 (4%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| | |||| || || || ||| || ||| ||||||||||||| Sbjct 448421 CTTCTTAGAGGGACAAGCGGCACACTTAAGTCGCACGAAATT-GAG-CAATAACAGGTCT 448364 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TC 186 ||||||||||||||||| | ||||| |||| |||||||| |||| | |||| ||||| | Sbjct 448363 GTGATGCCCTTAGATGTCCGGGGCCACACGTGCGCTACAATGACGGTGCCAGCGAGTCTG 448304 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 |||| | ||| |||| |||| || || || | | | |||||| Sbjct 448303 GGAACCTGGCCCGAAAGGGTTGGGCAAACTGTTTCATCACCGTCGTG 448257 >seq290 Length=352303 Score = 96.9 bits (106), Expect = 7e-18 Identities = 123/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 162 CTACACTGACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTT 220 ||||| || | | |||||||||| | |||| | ||| |||| |||| || || || Sbjct 348465 CTACAATGGCGGTGCCAACGAGTCTGGGAACCTGGCCCGAAAGGGTTGGGCAAACTGTTT 348406 Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280 | | | ||| || ||||| | ||||||||||| | | | |||||||||| ||| Sbjct 348405 CATCACCGTCATGACTGGGATCTGGGCTTGCAATTATTCCCCGTGAACGAGGAATTCCTG 348346 Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| || ||||| ||| ||| ||||||||||||| ||||||||| Sbjct 348345 GTAAGTGCAAGTCATAAGCTTGCGCTGATTACGTCCCTACCCTTTGTA 348298 >seq70 Length=672719 Score = 95.1 bits (104), Expect = 2e-17 Identities = 122/167 (73%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 163 TACACTGACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTA 221 |||| |||| | ||| ||||| | |||| | ||| |||| ||||| | || || Sbjct 238091 TACAATGACGGTACCAGCGAGTCTGGAAACCTGGACCGAAAGGGTTGGGTTAACTGTTTC 238032 Query 222 AACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAG 281 | | | |||||| | | ||| | | ||||||||||| | | | ||| |||||| ||||| Sbjct 238031 ATCACGGTCGTGATTGAGATCGGGGTTTGCAATTATTCCCCATGAACAAGGAATTCCTAG 237972 Query 282 TAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| || ||||||||| || ||||||| |||||| |||||||| Sbjct 237971 TAAGTGCAAGTCATCAGCTTGCACTGATTACTTCCCTGTCCTTTGTA 237925 >seq339 Length=321800 Score = 89.7 bits (98), Expect = 1e-15 Identities = 164/234 (70%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 73 TTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||| | ||| || || || ||| || ||| |||||||| || || Sbjct 24147 TTCTTAGAGGGACAAGTGGCACACCTAAGTCGCACGAAATT-GAG-CAATAACAAGTATG 24204 Query 129 TGATGCCCTTAGATGTTCTG-GGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187 |||||||||||||||| | | |||| |||| |||||||| |||| ||| ||||| Sbjct 24205 TGATGCCCTTAGATGTCCAGTGGCCACACGTGCGCTACAACAACAGTACCAGCGAGTCTG 24264 Query 188 TCACCTTGGCCGG--AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | | |||| | ||||| | || || || || | | | ||||| ||||| ||| Sbjct 24265 GAAACCAGGCCTGAAAAGGT-TTGGCAAACTGTTTCATCACCATCGTGACTGGGATCGAG 24323 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 ||||||||||| | | | ||||| ||| || |||| || ||||| ||| Sbjct 24324 GCTTGCAATTATTCCCCATGAACGAAAAATTCCAGTTAAGTGCAAGTCATAAGC 24377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946917412352