Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06-
09] 29,834 sequences; 375,894,156 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq77 187 5e-45
seq47 138 2e-30
seq1086 132 9e-29
seq629 127 4e-27
seq937 125 1e-26
seq148 109 1e-21
seq290 96.9 7e-18
seq70 95.1 2e-17
seq339 89.7 1e-15
>seq77
Length=653045
Score = 187 bits (206), Expect = 5e-45
Identities = 201/262 (77%), Gaps = 7/262 (3%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127
|||||||||||||| | |||| || || || ||| || ||| |||||||||||||
Sbjct 459929 CTTCTTAGAGGGACAAGCGGCACACTTAAGTCGCACGAAATT-GAG-CAATAACAGGTCT 459872
Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187
||||||||||||||||| | ||||| |||| |||||||| |||| | |||| |||||
Sbjct 459871 GTGATGCCCTTAGATGTCCGGGGCCACACGTGCGCTACAATGACGGTGCCAGCGAGTCTG 459812
Query 188 TCACCTTGGC-CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246
| | |||| || |||| |||| || || || | | | |||||| ||||| | |
Sbjct 459811 GGAACCTGGCTCGAAAGGGTTGGGCAAACTGTTTCATCACCGTCGTGACTGGGATCGGGG 459752
Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306
||||||||||| | | | |||||||||| ||| ||||| || ||||| ||| ||| |
Sbjct 459751 CTTGCAATTATTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCT 459692
Query 307 GATTACGTCCCTGCCCTTTGTA 328
||||||||||||||||||||||
Sbjct 459691 GATTACGTCCCTGCCCTTTGTA 459670
>seq47
Length=754565
Score = 138 bits (152), Expect = 2e-30
Identities = 162/215 (75%), Gaps = 3/215 (1%)
Strand=Plus/Minus
Query 116 AATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAG 175
|||||||||||||||||||||||||| || | ||||| |||| |||||||| |||| | |
Sbjct 135709 AATAACAGGTCTGTGATGCCCTTAGACGTCCGGGGCCACACGTGCGCTACAATGACGGTG 135650
Query 176 CCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGT-AATCTTGTTAAACTCTGTCGTG- 233
||| |||| | | ||||| |||| | | ||| || || || | | | |||||
Sbjct 135649 CCAGTGAGTCTGGAAACCTGGCCCGAAGATGTTGGTCAAACTGTTTCATCGCCATCGTGA 135590
Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293
||||| | || | ||||||||| | ||| |||||||||| || || || || |||
Sbjct 135589 CTGGGCTCATGGC-TCGCAATTATTCCCCTTGAACGAGGAATTCCCGGTCAGTGCAAGTC 135531
Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|| ||| ||| |||||||||||||| ||||||||
Sbjct 135530 ATAAGCTTGCGCTGATTACGTCCCTGGCCTTTGTA 135496
>seq1086
Length=81274
Score = 132 bits (146), Expect = 9e-29
Identities = 193/264 (73%), Gaps = 18/264 (7%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC----TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127
|||||||||||||| | || | | ||| | ||| || ||| ||||||| ||||
Sbjct 64076 CTTCTTAGAGGGACAAGCGTCATATTTAAGTGGCACGAAATT-GAG-CAATAACGCGTCT 64019
Query 128 GTGATGCCCTTAGATGTTCTGG-GCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-T 185
|||||||||||||||| ||||| | | |||| |||||||| |||| | |||||||||| |
Sbjct 64018 GTGATGCCCTTAGATG-TCTGGAGACACACGTGCGCTACAATGACGGTGCCAACGAGTCT 63960
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG-CTGGGGATAGA 244
| |||| |||||| |||| |||| || || || | | ||||| ||||||
Sbjct 63959 GACCACC-TGGCCGAAAGGGTTGGGCAAACTGTTTCATCAAGTTCGTGACTGGGG----- 63906
Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304
||||||||| | | | | || ||||||| ||| |||| | |||| ||| |||
Sbjct 63905 --TTTGCAATTAATCCCCGTGAATGAGGAATTCCTGGTAAATGTAACTCATAAGCTTGCG 63848
Query 305 TTGATTACGTCCCTGCCCTTTGTA 328
|||||| ||||||||||||||||
Sbjct 63847 CTGATTATGTCCCTGCCCTTTGTA 63824
>seq629
Length=181732
Score = 127 bits (140), Expect = 4e-27
Identities = 162/219 (74%), Gaps = 3/219 (1%)
Strand=Plus/Plus
Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168
||||| |||||||| |||||| ||||| |||||||| | || || |||| |||||||| |
Sbjct 104010 TTGAG-CAATAACATGTCTGTAATGCCGTTAGATGTCCGGGACCACACGTGCGCTACAAT 104068
Query 169 GACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT 227
||||| |||||||||| | |||| | ||| |||| | || || | || | | |
Sbjct 104069 GACAGTGCCAACGAGTCTGGAAACCTGGCCCGAAAGGGTTTGGCAAATTGTTTCATCACA 104128
Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287
|||||| ||||| | | ||||||||||| | | | |||||||||| ||| ||||| |
Sbjct 104129 GTCGTGACTGGGATCGGGGCTTGCAATTATTCCCCGTGAACGAGGAATTCCTGGTAAGTG 104188
Query 288 CGTGTCATCAGC-ACGCGTTGATTACGTCCCTGCCCTTT 325
| ||||| | | | ||||| ||||||| ||||||
Sbjct 104189 CAAGTCATAAACTTTGATCTGATTGCGTCCCTACCCTTT 104227
>seq937
Length=103887
Score = 125 bits (138), Expect = 1e-26
Identities = 155/211 (73%), Gaps = 11/211 (5%)
Strand=Plus/Minus
Query 119 AACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCA 178
|| ||||||||||||||||||||||| | ||| | |||| |||||||| |||| | ||||
Sbjct 29068 AATAGGTCTGTGATGCCCTTAGATGTCCGGGGTCACACGAGCGCTACAATGACGGCGCCA 29009
Query 179 ACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGG 237
||||| | |||| | ||| |||| |||| | | || | | || |
Sbjct 29008 GCGAGTCTGGAAACCTGGCCCGAAAGGGGTGGGCAGTACCGTCA---------GGACTAG 28958
Query 238 GGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCA 297
| || || ||||||||||| ||| | |||||||||| ||| ||||| || ||||| |
Sbjct 28957 GATCAGGGC-TTGCAATTATTCCTCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAA 28899
Query 298 GCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|| || |||||||||||||||||||||||
Sbjct 28898 GCTTACGCTGATTACGTCCCTGCCCTTTGTA 28868
>seq148
Length=510417
Score = 109 bits (120), Expect = 1e-21
Identities = 127/167 (76%), Gaps = 7/167 (4%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127
|||||||||||||| | |||| || || || ||| || ||| |||||||||||||
Sbjct 448421 CTTCTTAGAGGGACAAGCGGCACACTTAAGTCGCACGAAATT-GAG-CAATAACAGGTCT 448364
Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TC 186
||||||||||||||||| | ||||| |||| |||||||| |||| | |||| ||||| |
Sbjct 448363 GTGATGCCCTTAGATGTCCGGGGCCACACGTGCGCTACAATGACGGTGCCAGCGAGTCTG 448304
Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233
|||| | ||| |||| |||| || || || | | | ||||||
Sbjct 448303 GGAACCTGGCCCGAAAGGGTTGGGCAAACTGTTTCATCACCGTCGTG 448257
>seq290
Length=352303
Score = 96.9 bits (106), Expect = 7e-18
Identities = 123/168 (73%), Gaps = 1/168 (1%)
Strand=Plus/Minus
Query 162 CTACACTGACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTT 220
||||| || | | |||||||||| | |||| | ||| |||| |||| || || ||
Sbjct 348465 CTACAATGGCGGTGCCAACGAGTCTGGGAACCTGGCCCGAAAGGGTTGGGCAAACTGTTT 348406
Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280
| | | ||| || ||||| | ||||||||||| | | | |||||||||| |||
Sbjct 348405 CATCACCGTCATGACTGGGATCTGGGCTTGCAATTATTCCCCGTGAACGAGGAATTCCTG 348346
Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||||| || ||||| ||| ||| ||||||||||||| |||||||||
Sbjct 348345 GTAAGTGCAAGTCATAAGCTTGCGCTGATTACGTCCCTACCCTTTGTA 348298
>seq70
Length=672719
Score = 95.1 bits (104), Expect = 2e-17
Identities = 122/167 (73%), Gaps = 1/167 (1%)
Strand=Plus/Minus
Query 163 TACACTGACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTA 221
|||| |||| | ||| ||||| | |||| | ||| |||| ||||| | || ||
Sbjct 238091 TACAATGACGGTACCAGCGAGTCTGGAAACCTGGACCGAAAGGGTTGGGTTAACTGTTTC 238032
Query 222 AACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAG 281
| | | |||||| | | ||| | | ||||||||||| | | | ||| |||||| |||||
Sbjct 238031 ATCACGGTCGTGATTGAGATCGGGGTTTGCAATTATTCCCCATGAACAAGGAATTCCTAG 237972
Query 282 TAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|||| || ||||||||| || ||||||| |||||| ||||||||
Sbjct 237971 TAAGTGCAAGTCATCAGCTTGCACTGATTACTTCCCTGTCCTTTGTA 237925
>seq339
Length=321800
Score = 89.7 bits (98), Expect = 1e-15
Identities = 164/234 (70%), Gaps = 10/234 (4%)
Strand=Plus/Plus
Query 73 TTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128
||||||||||||| | ||| || || || ||| || ||| |||||||| || ||
Sbjct 24147 TTCTTAGAGGGACAAGTGGCACACCTAAGTCGCACGAAATT-GAG-CAATAACAAGTATG 24204
Query 129 TGATGCCCTTAGATGTTCTG-GGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187
|||||||||||||||| | | |||| |||| |||||||| |||| ||| |||||
Sbjct 24205 TGATGCCCTTAGATGTCCAGTGGCCACACGTGCGCTACAACAACAGTACCAGCGAGTCTG 24264
Query 188 TCACCTTGGCCGG--AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| | |||| | ||||| | || || || || | | | ||||| ||||| |||
Sbjct 24265 GAAACCAGGCCTGAAAAGGT-TTGGCAAACTGTTTCATCACCATCGTGACTGGGATCGAG 24323
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299
||||||||||| | | | ||||| ||| || |||| || ||||| |||
Sbjct 24324 GCTTGCAATTATTCCCCATGAACGAAAAATTCCAGTTAAGTGCAAGTCATAAGC 24377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946917412352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |