Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06-
09] 29,834 sequences; 375,894,156 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq2499 329 1e-87
seq86 286 1e-74
seq153 199 1e-48
seq234 183 1e-43
seq117 168 2e-39
seq4838 161 3e-37
seq397 118 3e-24
seq532 98.7 3e-18
seq103 86.0 2e-14
seq321 77.0 1e-11
seq16 75.2 4e-11
>seq2499
Length=8297
Score = 329 bits (364), Expect = 1e-87
Identities = 234/269 (87%), Gaps = 11/269 (4%)
Strand=Plus/Minus
Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC------ 228
||| |||| ||| |||||||| |||| || | | |||||||||||| | ||||
Sbjct 2082 CCGTTTCACTGAATAAGTAAAGAAACAATGATAGCAGTGGTATTTCATTAGCGCTGGACA 2023
Query 229 -CGAAACG----GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTA 283
|||| | |||||||| ||| ||||| | ||| ||| ||||||||||||||||
Sbjct 2022 CCGAAGCACCCAGCTCCCACCTATACTACATCCATCATGTCTCCTCACAAAGTCGGACTA 1963
Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1962 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTCTGCCAAGCCCGTTCCCTTGGCT 1903
Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 1843
Query 404 CACTAATTAGATGACGAGGCATTTGGCTA 432
|||||||||||||||||||||||||||||
Sbjct 1842 CACTAATTAGATGACGAGGCATTTGGCTA 1814
>seq86
Length=635287
Score = 286 bits (316), Expect = 1e-74
Identities = 221/265 (83%), Gaps = 11/265 (4%)
Strand=Plus/Plus
Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA----- 233
|||| ||| |||||||| |||| || | | |||||||||||| || ||| | |
Sbjct 408527 TTCACTGAATAAGTAAAGAAACAATGATAGCAGTGGTATTTCATTTACGCTGGACACTGA 408586
Query 234 ------CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287
| | ||||| ||| ||||| | | | ||| | ||||||||||||||||||||
Sbjct 408587 AGCACCCAGTTCCCATCTATACTACATCCATTATGTCTTCTCACAAAGTCGGACTAGAGT 408646
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347
|||||||||||||||||||||||| |||| |||| |||||| |||||||||||| |||||
Sbjct 408647 CAAGCTCAACAGGGTCTTCTTTCCTCGCTAATTCTGCCAAGACCGTTCCCTTGGTTGTGG 408706
Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 408707 TTTCGCTAAATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTTATGCGTGTCACT 408766
Query 408 AATTAGATGACGAGGCATTTGGCTA 432
|||||||||||||||||||||||||
Sbjct 408767 AATTAGATGACGAGGCATTTGGCTA 408791
>seq153
Length=504212
Score = 199 bits (220), Expect = 1e-48
Identities = 153/180 (85%), Gaps = 1/180 (1%)
Strand=Plus/Minus
Query 271 CAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCC 330
|| |||||||| |||||||| | ||||||||||||||||| |||| |||| ||| ||||
Sbjct 491020 CAGAGTCGGACCAGAGTCAAACCTAACAGGGTCTTCTTTCCTCGCTAATTCTGCCCAGCC 490961
Query 331 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATC 390
||| |||||| ||||||||| ||||||||||||| |||| ||||| |||||||||||||
Sbjct 490960 CGTCGCCTTGGTTGTGGTTTCACTAGATAGTAGATCGGGATAGTGGTAATCTCGTTAATC 490901
Query 391 CATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGT 450
|||| || || |||| |||||||||||||||||||| |||||||| || ||| ||||
Sbjct 490900 CATTTATATGCATCACCTATTAGATGACGAGGCATTTGACTACCTTATGATGGTC-TAGT 490842
>seq234
Length=403337
Score = 183 bits (202), Expect = 1e-43
Identities = 155/191 (81%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301
|| ||| |||| | ||| ||| || ||||||| ||| |||||||||||| |||||||
Sbjct 4576 ACCTATACTACGTCCATCATGTCTCTTAACAAAGTTGGATTAGAGTCAAGCTAAACAGGG 4517
Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361
|||||||| || | | |||| ||||||||||||| || |||||||||| | |||||| |
Sbjct 4516 TCTTCTTTTCCTGATAATTCTGCCAAGCCCGTTCTCTAAGCTGTGGTTTTGTTAGATACT 4457
Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421
|| ||| |||| | |||||||||||||| ||| |||||||||| || ||| ||||| ||
Sbjct 4456 AGGTAGAGACAATAGGAATCTCGTTAATAAATTTATGCGCGTCAATAGTTAAATGACAAG 4397
Query 422 GCATTTGGCTA 432
||||||| |||
Sbjct 4396 GCATTTGACTA 4386
>seq117
Length=560489
Score = 168 bits (186), Expect = 2e-39
Identities = 98/101 (97%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 514722 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTCGGTTGAATTTCTTCA 514663
Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530
||||||||||||||||||||| ||||||||||| |||||||
Sbjct 514662 CTTTGACATTCAGAGCACTGGACAGAAATCACACTGCGTCA 514622
>seq4838
Length=1587
Score = 161 bits (178), Expect = 3e-37
Identities = 91/92 (99%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 323 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTCAATCCATTCATGCG 264
Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTA 432
||||||||||||||||||||||||||||||||
Sbjct 263 CGTCACTAATTAGATGACGAGGCATTTGGCTA 232
>seq397
Length=287344
Score = 118 bits (130), Expect = 3e-24
Identities = 124/162 (77%), Gaps = 12/162 (7%)
Strand=Plus/Plus
Query 175 CCGCTTCATTGATTAAGTaaa-aaaaCGATAAGGGTAGTGGTATTTCACTTGCGC----- 228
||| | || ||| |||||||| |||| || | | |||||||||||| ||||||
Sbjct 223491 CCGTTCCACTGAATAAGTAAAGAAAAAAATGATAGCAGTGGTATTTCATTTGCGCTAGGC 223550
Query 229 --CGAAA----CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACT 282
|||| | |||| ||| ||| ||||| | ||| ||| ||||||||||||||||
Sbjct 223551 TCCGAAGGACCCAGCTCTCACCTATACTACATCCATCATGTCTCTTCACAAAGTCGGACT 223610
Query 283 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324
||||||||| |||||||||||||||||||||| | |||| ||
Sbjct 223611 AGAGTCAAGATCAACAGGGTCTTCTTTCCCCGTTAATTCTGC 223652
>seq532
Length=220345
Score = 98.7 bits (108), Expect = 3e-18
Identities = 57/59 (97%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 447 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 505
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 59 TAGTTACTCCCGCCGTTTACTCGTGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 1
>seq103
Length=585246
Score = 86.0 bits (94), Expect = 2e-14
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460
||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 296543 ATTAGATGACGAGGCATTTAGCTACCTTAAGAGAGTCATAGTTACCCCCGCC 296594
>seq321
Length=329572
Score = 77.0 bits (84), Expect = 1e-11
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460
|||||||||| ||||||||||||||||| |||||| ||||||||||||||
Sbjct 282873 TAGATGACGAAGCATTTGGCTACCTTAAAAGAGTCGTAGTTACTCCCGCC 282922
>seq16
Length=990905
Score = 75.2 bits (82), Expect = 4e-11
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Minus
Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTC 455
||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 550843 TTAGATGACGAGGTATTTAGCTACCTTAAGAGAGTCATAGTTACTC 550798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634712154432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |