Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2499 329 1e-87 seq86 286 1e-74 seq153 199 1e-48 seq234 183 1e-43 seq117 168 2e-39 seq4838 161 3e-37 seq397 118 3e-24 seq532 98.7 3e-18 seq103 86.0 2e-14 seq321 77.0 1e-11 seq16 75.2 4e-11 >seq2499 Length=8297 Score = 329 bits (364), Expect = 1e-87 Identities = 234/269 (87%), Gaps = 11/269 (4%) Strand=Plus/Minus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC------ 228 ||| |||| ||| |||||||| |||| || | | |||||||||||| | |||| Sbjct 2082 CCGTTTCACTGAATAAGTAAAGAAACAATGATAGCAGTGGTATTTCATTAGCGCTGGACA 2023 Query 229 -CGAAACG----GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTA 283 |||| | |||||||| ||| ||||| | ||| ||| |||||||||||||||| Sbjct 2022 CCGAAGCACCCAGCTCCCACCTATACTACATCCATCATGTCTCCTCACAAAGTCGGACTA 1963 Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 1962 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTCTGCCAAGCCCGTTCCCTTGGCT 1903 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1902 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 1843 Query 404 CACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||||||| Sbjct 1842 CACTAATTAGATGACGAGGCATTTGGCTA 1814 >seq86 Length=635287 Score = 286 bits (316), Expect = 1e-74 Identities = 221/265 (83%), Gaps = 11/265 (4%) Strand=Plus/Plus Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA----- 233 |||| ||| |||||||| |||| || | | |||||||||||| || ||| | | Sbjct 408527 TTCACTGAATAAGTAAAGAAACAATGATAGCAGTGGTATTTCATTTACGCTGGACACTGA 408586 Query 234 ------CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287 | | ||||| ||| ||||| | | | ||| | |||||||||||||||||||| Sbjct 408587 AGCACCCAGTTCCCATCTATACTACATCCATTATGTCTTCTCACAAAGTCGGACTAGAGT 408646 Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 |||||||||||||||||||||||| |||| |||| |||||| |||||||||||| ||||| Sbjct 408647 CAAGCTCAACAGGGTCTTCTTTCCTCGCTAATTCTGCCAAGACCGTTCCCTTGGTTGTGG 408706 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 408707 TTTCGCTAAATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTTATGCGTGTCACT 408766 Query 408 AATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||| Sbjct 408767 AATTAGATGACGAGGCATTTGGCTA 408791 >seq153 Length=504212 Score = 199 bits (220), Expect = 1e-48 Identities = 153/180 (85%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 271 CAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCC 330 || |||||||| |||||||| | ||||||||||||||||| |||| |||| ||| |||| Sbjct 491020 CAGAGTCGGACCAGAGTCAAACCTAACAGGGTCTTCTTTCCTCGCTAATTCTGCCCAGCC 490961 Query 331 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATC 390 ||| |||||| ||||||||| ||||||||||||| |||| ||||| ||||||||||||| Sbjct 490960 CGTCGCCTTGGTTGTGGTTTCACTAGATAGTAGATCGGGATAGTGGTAATCTCGTTAATC 490901 Query 391 CATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGT 450 |||| || || |||| |||||||||||||||||||| |||||||| || ||| |||| Sbjct 490900 CATTTATATGCATCACCTATTAGATGACGAGGCATTTGACTACCTTATGATGGTC-TAGT 490842 >seq234 Length=403337 Score = 183 bits (202), Expect = 1e-43 Identities = 155/191 (81%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 || ||| |||| | ||| ||| || ||||||| ||| |||||||||||| ||||||| Sbjct 4576 ACCTATACTACGTCCATCATGTCTCTTAACAAAGTTGGATTAGAGTCAAGCTAAACAGGG 4517 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 |||||||| || | | |||| ||||||||||||| || |||||||||| | |||||| | Sbjct 4516 TCTTCTTTTCCTGATAATTCTGCCAAGCCCGTTCTCTAAGCTGTGGTTTTGTTAGATACT 4457 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 || ||| |||| | |||||||||||||| ||| |||||||||| || ||| ||||| || Sbjct 4456 AGGTAGAGACAATAGGAATCTCGTTAATAAATTTATGCGCGTCAATAGTTAAATGACAAG 4397 Query 422 GCATTTGGCTA 432 ||||||| ||| Sbjct 4396 GCATTTGACTA 4386 >seq117 Length=560489 Score = 168 bits (186), Expect = 2e-39 Identities = 98/101 (97%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 514722 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTCGGTTGAATTTCTTCA 514663 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 ||||||||||||||||||||| ||||||||||| ||||||| Sbjct 514662 CTTTGACATTCAGAGCACTGGACAGAAATCACACTGCGTCA 514622 >seq4838 Length=1587 Score = 161 bits (178), Expect = 3e-37 Identities = 91/92 (99%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 323 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTCAATCCATTCATGCG 264 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||||||||||||||| Sbjct 263 CGTCACTAATTAGATGACGAGGCATTTGGCTA 232 >seq397 Length=287344 Score = 118 bits (130), Expect = 3e-24 Identities = 124/162 (77%), Gaps = 12/162 (7%) Strand=Plus/Plus Query 175 CCGCTTCATTGATTAAGTaaa-aaaaCGATAAGGGTAGTGGTATTTCACTTGCGC----- 228 ||| | || ||| |||||||| |||| || | | |||||||||||| |||||| Sbjct 223491 CCGTTCCACTGAATAAGTAAAGAAAAAAATGATAGCAGTGGTATTTCATTTGCGCTAGGC 223550 Query 229 --CGAAA----CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACT 282 |||| | |||| ||| ||| ||||| | ||| ||| |||||||||||||||| Sbjct 223551 TCCGAAGGACCCAGCTCTCACCTATACTACATCCATCATGTCTCTTCACAAAGTCGGACT 223610 Query 283 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324 ||||||||| |||||||||||||||||||||| | |||| || Sbjct 223611 AGAGTCAAGATCAACAGGGTCTTCTTTCCCCGTTAATTCTGC 223652 >seq532 Length=220345 Score = 98.7 bits (108), Expect = 3e-18 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 447 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 505 |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 59 TAGTTACTCCCGCCGTTTACTCGTGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 1 >seq103 Length=585246 Score = 86.0 bits (94), Expect = 2e-14 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 ||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 296543 ATTAGATGACGAGGCATTTAGCTACCTTAAGAGAGTCATAGTTACCCCCGCC 296594 >seq321 Length=329572 Score = 77.0 bits (84), Expect = 1e-11 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 |||||||||| ||||||||||||||||| |||||| |||||||||||||| Sbjct 282873 TAGATGACGAAGCATTTGGCTACCTTAAAAGAGTCGTAGTTACTCCCGCC 282922 >seq16 Length=990905 Score = 75.2 bits (82), Expect = 4e-11 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTC 455 ||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 550843 TTAGATGACGAGGTATTTAGCTACCTTAAGAGAGTCATAGTTACTC 550798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634712154432