Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq167 244 3e-62 seq940 232 2e-58 seq71 190 6e-46 seq52 185 3e-44 seq397 176 1e-41 seq426 167 7e-39 seq78 140 1e-30 seq4 113 1e-22 seq179 111 5e-22 seq47 104 7e-20 seq1091 82.4 2e-13 seq311 77.0 1e-11 >seq167 Length=484514 Score = 244 bits (270), Expect = 3e-62 Identities = 302/405 (75%), Gaps = 26/405 (6%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATT-GTCACTAC 58 |||||||||| ||||| || || ||| ||| || || || |||||| || |||||||| Sbjct 309110 GTACTCATTCGAATTAAAAAGCCTCAATGGAGTCCCGTGTCCGTATTTTTTTGTCACTAC 309051 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 ||| | ||| ||||| |||||||||| |||||||||||| ||||||||||||||||| Sbjct 309050 CTCTCTGTGCCGGGAGTGGGTAATTTAAGCGCCTGCTGCCGTCCTTGGATGTGGTAGCTA 308991 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||| |||| || ||||||||||||| |||||| ||| ||||||| | ||| | ||||| Sbjct 308990 TTTATCAGACTTCCTCTCCGGAATCAAACCCTGATTACCCGTTATCTGTTATCATCATGG 308931 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 ||||| | | |||| || | || |||||||| ||| ||||||| || || |||||| Sbjct 308930 TAGGCAAATCACCTATCAAC--AAACTGATAGGGTAGATATTTGAAAGATCCGTCGCCGA 308873 Query 239 CTCAAGGCC--ATGCGATTCGTTAAGTTATTATGAATCACCAAGGA---------GCCC- 286 | ||||||| || ||| || ||||||| | ||| || || || | Sbjct 308872 CACAAGGCCGACTGTGATCAGTAAAGTTATCCAAAGTCATCACAGAATGTAACAGGCACA 308813 Query 287 --CGAAGGGCGTTGGTTTTTTATCTAATAAATACA-----CCCCTTCCGAAGTCGGGGTT 339 |||| |||||| | | |||||||||| || |||||| || ||| ||| | Sbjct 308812 AATGAAGCCGATTGGTTCTGT-TCTAATAAATGCACCTGTCCCCTTGCG-GGTCAGGGAT 308755 Query 340 TTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAG 383 || | |||||||||||||||| |||||| || ||||||||||||| Sbjct 308754 TTAAGGCATGTATTAGCTCTATAATTACTACAGTTATCCATGTAG 308710 >seq940 Length=103742 Score = 232 bits (256), Expect = 2e-58 Identities = 312/427 (73%), Gaps = 37/427 (9%) Strand=Plus/Plus Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || |||||| ||||| ||||||||||||||||||||||||||||||| |||| |||||| Sbjct 60639 TTAGATGTGCTAGCCATTTCTCAGGCTCCCTCTCCGGAATCGAACCCAGATTCTCCGTTA 60698 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 | | |||| ||| | | | |||| || | || |||||| |||||| ||||| Sbjct 60699 TC-------ATCATGATAGCCAAATTACCTATCAACAAA--TTGATAAGGCAGACATTTG 60749 Query 223 AATGAACCATCGCCGGCTCAAGGCC--ATGCGATTCGTTAAGTTATTATGAATCACCA-A 279 || || || |||||| | ||||||| ||||||| || ||||||| | ||| || | Sbjct 60750 AAAGATCCTTCGCCGACACAAGGCCGAATGCGATCAGTAAAGTTATCCAGGGTCATCACA 60809 Query 280 G-------GAGCC----CCGAAGGGCG------TTGGTTTTTTATCTAATAAATACACCC 322 | ||| | |||||| |||||| | | |||||||||| ||||| Sbjct 60810 GAATGTTAGAGACACAGCCGAAGCCTCACCCTATTGGTTCTGT-TCTAATAAATGCACCC 60868 Query 323 CTTCCGAAG----TCGGGGTTTTTAG-CATGTATTAGCTCTAGAATTACCACGGTTATCC 377 |||| | || ||| || || ||||||||||||||||||||| || ||||| | Sbjct 60869 GTTCCCTTGCGGGTCAGGGATTCAAGGCATGTATTAGCTCTAGAATTATTACAGTTATTC 60928 Query 378 ATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 |||||| | ||| || || ||| ||| |||||| | ||||| ||||| ||||||| Sbjct 60929 ATGTAGCATT-TACGATATAAAGAACCATAGCTGATTCAGTGAGCTATTCGTGGTTTCAC 60987 Query 438 TGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTA 497 || | | | | ||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 60988 CGTTTTAAG-GTATGTACTTAGACATTCATGGCTTAATCTCTGAGACAAGCATATGACTA 61046 Query 498 CTGGCAG 504 ||||||| Sbjct 61047 CTGGCAG 61053 >seq71 Length=672713 Score = 190 bits (210), Expect = 6e-46 Identities = 175/215 (81%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTC-----CGAAGTCGGGGTTTTTAG-CATGT 349 |||||| | | |||||||||||||||| ||| || ||| ||| || || ||||| Sbjct 377653 TTGGTTCTGT-TCTAATAAATACACCCGTTCTCTTGCGG-GTCAGGGATTCAAGGCATGT 377596 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||||| || ||||||||||||||| ||| ||| || ||| ||| | Sbjct 377595 ATTAGCTCTAGAATTACTACAGTTATCCATGTAGTATT-TACGATCTAAGGAACCATAGC 377537 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 ||||| |||||||||||||| ||||||| || | | | | ||||||||||||||||| Sbjct 377536 TGATTCAATGAGCCATTCGCGGTTTCACCGTTTTAAG-GTATGTACTTAGACATGCATGG 377478 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||||||||| |||||||||||||||| Sbjct 377477 CTTAATCTCTGAGACAAGTATATGACTACTGGCAG 377443 >seq52 Length=730220 Score = 185 bits (204), Expect = 3e-44 Identities = 141/164 (86%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400 |||||||||||||||||||||||||| || ||||||||||||| | ||| ||| || Sbjct 182453 TTAGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAGCATT-TACGATCTAAGG 182511 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 ||| ||| ||||||||||||||||||||| ||||||| || | | | | |||||||| Sbjct 182512 AACCATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTTTTAAG-GTATGTACTTAGA 182570 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 182571 CATGCATGGCTTAATCTCTGAGACAAGCATATGACTACTGGCAG 182614 >seq397 Length=287344 Score = 176 bits (194), Expect = 1e-41 Identities = 297/417 (71%), Gaps = 21/417 (5%) Strand=Plus/Plus Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||| | || ||| |||||||| ||||||||||||||||||| ||||| ||||| Sbjct 195297 TTGGATGTGTCAACCATTTGTCAGGCTCTCTCTCCGGAATCGAACCCTGATTCCTCGTTA 195356 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||| || |||||||||| | | |||| | | || ||||||||| ||| ||||| Sbjct 195357 CCCTTTATCGTCATGGTAGGCAAATCACCTATGAACAAA--TTGATAGGGGAGACATTTG 195414 Query 223 AATGAACCATCGCCGGCTCAAGGCCAT-GCGAT-TCGTTAAGTTATTAT-GAATC-ACCA 278 || | || ||||| | ||| | | | | | || || | || | |||| | || Sbjct 195415 AAAGGTCCTTCGCCAACCCAACCCAGTAGAGCTATCCAGAA-TCATCACAGAATGTAACA 195473 Query 279 AGGAGCCCCGAAGGG-----CGTTGGTTTTTTATCTAATAAATACACC-----CCTTCCG 328 | | |||||| || | | || | |||||| ||| |||| |||| || Sbjct 195474 GGTACAGTCGAAGGCTCATCCGATTGCTTCTGCTCTAATGAATGCACCTAGACCCTTGCG 195533 Query 329 AAGTCGGGGTTTTTAG-CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG 387 ||| ||| || || |||| ||||| ||||||| ||| || ||||||||| ||| Sbjct 195534 G-GTCAGGGATTCAAGGCATGCATTAGTTCTAGAACTACTACAGTTATCCATTTAGCGTT 195592 Query 388 GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT 447 ||| ||| || ||| ||| || ||||||| |||||||| ||||||| || | | Sbjct 195593 -TACGATCTAAGGAACCATAGCTCATTTAATAGCCCATTCGCGGTTTCACCGTTTTAAG- 195650 Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | | ||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 195651 GTATGTACTTAGACATGCATGGCTTAATACCTCAGACAAGCATATGACTACTGGCAG 195707 >seq426 Length=271708 Score = 167 bits (184), Expect = 7e-39 Identities = 134/159 (84%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGA 405 ||||||||||||||||||||| || ||||||||||||||| ||| | | || ||| | Sbjct 41029 ATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAGTATT-TACGACCTAAGGAACCA 40971 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465 || ||||||||||||||||||||| | ||||| || | | | | ||||||||||||| Sbjct 40970 TAGCTGATTTAATGAGCCATTCGCGGCTTCACCGTTTTAAG-GTATGTACTTAGACATGC 40912 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||| ||||||||| |||||||||||||||| Sbjct 40911 ATGGCTTAATCTCTGAGACAAGGATATGACTACTGGCAG 40873 >seq78 Length=650918 Score = 140 bits (154), Expect = 1e-30 Identities = 166/218 (76%), Gaps = 13/218 (6%) Strand=Plus/Minus Query 296 TTGGTTTTTTATCTAATAAATACACC-----CCTTCCGAAGTCGGGGTTTTTAG-CATGT 349 |||||| | | |||||||||| ||| |||| || ||| ||| || || ||||| Sbjct 567680 TTGGTTCTGT-TCTAATAAATGTACCTGTCCCCTTGCGG-GTCAGGGATTCAAGACATGT 567623 Query 350 ATTAG---CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGAT 406 | ||| | |||||||||| || ||||||||||||| | ||| ||| || |||| || Sbjct 567622 AGTAGTAGCACTAGAATTACTACAGTTATCCATGTAGCATT-TACGATCTAAGAAACCAT 567564 Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 | ||||||||||||||||||||| |||||| || | | | | |||||||| ||| | Sbjct 567563 AGCTGATTTAATGAGCCATTCGCGGTTTCATCGTTTTAAG-GTATGTACTTAGATATGTA 567505 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||| |||||||||||||||| ||||||| Sbjct 567504 TAGCTTAATCTCTGAGACAAGCATATGAAGGCTGGCAG 567467 >seq4 Length=1430671 Score = 113 bits (124), Expect = 1e-22 Identities = 122/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGA 405 || ||| ||| |||||| ||| || ||||||||||||| | ||| ||| || ||| | Sbjct 283365 ATATATAAGCACTAGAAGTACTACAGTTATCCATGTAGCATT-TACGATCTAAGTAACTA 283307 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465 | |||||||||| || | ||||| |||| || || | | | | ||||||| ||| Sbjct 283306 TCTCTGATTTAATAAGTCCTTCGCGGTTTTACCGTTTTAAG-GTATGTACTTAGGCATAT 283248 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||| ||||||||| |||||||||||| ||| Sbjct 283247 ATGGCTTAATCTCTGAGACAAGTATATGACTACTGACAG 283209 >seq179 Length=460774 Score = 111 bits (122), Expect = 5e-22 Identities = 159/225 (71%), Gaps = 18/225 (8%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||| |||||| || |||| || | || ||| || ||||| || ||| ||||||||| | Sbjct 327621 GTAATCATTCGAACTACAGAGCCTTAATTGAGTCCCGTATCTGTGTTTTTTGTCACTAAC 327680 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| | | | ||||||||| || | ||||| | |||||||||||||||||| | Sbjct 327681 TCCCCGTGACAGTAGCGGGTAATTTTCGTGACTGCTACAGTCCTTGGATGTGGTAGCCAT 327740 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 || | |||||||| ||| |||||||||||||||| | ||| Sbjct 327741 TT---------------CAGAATCGAAACCTGATTCCCCGTTACCCGTAATCTTTACGGT 327785 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAA 224 || | | | | || || | || |||||| |||||| ||||||| Sbjct 327786 AGACAAATCACATATCAAC--AAATTGATACGGCAGATATTTGAA 327828 >seq47 Length=754565 Score = 104 bits (114), Expect = 7e-20 Identities = 101/126 (80%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTT-ATT-GTCACTA 57 |||||||||| |||||| || || ||| || | ||| |||||| ||| ||||||| Sbjct 329562 GTACTCATTCGAATTACGGAGCTTGAATTGAGTCCCGCATCTGTATTTTATTCGTCACTA 329503 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 ||| || ||| |||| ||||||||||| | |||||||||| ||||||||||| |||||| Sbjct 329502 CCTTCCTGTGCCGGGGTTGGGTAATTTTCACGCCTGCTGCTGTCCTTGGATGTAGTAGCC 329443 Query 118 GTTTCT 123 ||||| Sbjct 329442 ATTTCT 329437 >seq1091 Length=80651 Score = 82.4 bits (90), Expect = 2e-13 Identities = 82/105 (78%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||| || |||||| ||| || ||| |||||||| |||||| | ||||||||| Sbjct 27442 GTACTCAATCGAATTACGGAACCTTAATTGAGTCCTGTATCCGTATTTTTCGTCACTACC 27383 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTT 104 |||||||| || | |||||||||| ||||||| | || | ||| Sbjct 27382 TCCCCGTGCAGGAAGTGGGTAATTTTTGCGCCTGTTACCGTTCTT 27338 >seq311 Length=338269 Score = 77.0 bits (84), Expect = 1e-11 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||| |||||||| ||||||||||||||||||||||| || Sbjct 207701 TATTTAGACATGCATGACTTAATCTCTGAGACAAGCATATGACTACTGGAAG 207752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509949387264