Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1010 187 2e-42 seq15752 131 1e-25 seq3397 111 1e-19 >seq1010 Length=92424 Score = 187 bits (206), Expect = 2e-42 Identities = 535/813 (66%), Gaps = 10/813 (1%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 |||||| || || || || || | |||||||| | |||||||| || ||| | ||| Sbjct 82883 GAACCCTTACTGAAACCAAACCCACACCGTTTCGTCCTTTTCCCCATAGAATATCACGAT 82824 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 | |||| | || || ||||| | |||||| || ||||| ||||| ||||| |||||| Sbjct 82823 GTCTGGCATTTTTATAAGAAGGCTGTAGCTTCTTTTTGGACTGTGGAAGAGGTGGATTTG 82764 Query 61147 TCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACA 61205 |||||||| | | | |||||| || | | | || |||| |||||||| | Sbjct 82763 TCCAAAGATCTCATACATTGGGAGTCGCTCA-AGGTTGGGGAACGTCATTTCATATCCTA 82705 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 ||||| || |||||||| || ||||| || || ||||| | | ||||| || Sbjct 82704 CGTGTTAGCTTTCTTTGCGGCGAGTGACGGAATTGTACTCGAGAACCTCCTAGAACGCTT 82645 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | ||||| || || | | |||| ||||| || || || | ||||| || || || Sbjct 82644 CAGCCAGGAAGTCCAGATCCCAGAGGTTCGTTGCTTTTATGGAATGCAGATAGCTATCGA 82585 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA 61385 |||| | ||||| || |||||| | | | || ||||| ||||||| || || Sbjct 82584 GAATATTCACTCTGAAATGTACTCTTTATTAATTGATACATACATCAAAGACTCCAAAGA 82525 Query 61386 ACGTGAACGATTGTTCAATGCCAT-CGAGACGATACCGGCGGTGAAGCGGAAAGCGGATT 61444 | | || | ||||| ||||| | || || | | || | || || | | Sbjct 82524 AAGGGACTTTCTCTTCAACGCCATAAGCAACTTAACTTGTGTTGCA-AAAAAGGCTCAGT 82466 Query 61445 GGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTG 61504 |||| || ||||||| | | | |||| |||| ||||| || | || |||| Sbjct 82465 GGGCATTAGATTGGATTGGAGATTCCAAATCTACTTTTGCAGAACGTTTAATTGCTTTTG 82406 Query 61505 CGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAAC 61564 | | || || ||||| ||||| ||| || || || || || ||| | ||||||| Sbjct 82405 CAGCAGTGGAAGGTGTTTTTTTTTCTGGTAGCTTCGCAGCTATATTCTGGCTTAAGAAAC 82346 Query 61565 GTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGC 61624 | || |||||||| || ||| | || |||||||| || || | ||||| || | | Sbjct 82345 GAGGTCTTATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTAC 82286 Query 61625 ATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGC 61684 |||||||||| ||| | | |||| |||| || | | || || ||||| || | Sbjct 82285 ATTGTGATTTCGCTTGTCTATTATTTAAAC---ATATTATCAAAAAGCCTTCGGAAGAAC 82229 Query 61685 GTGT-GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCT 61743 |||| | || | || | | |||||||| || ||||| || ||| | | || ||| Sbjct 82228 GTGTCGAGTCA-ATAATAAGAGAGGCGGTTCTAATAGAACAAGAGTTTTTATCAGAAGCT 82170 Query 61744 TTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTT 61803 | || ||| | || || |||||||| ||| |||| ||||| ||||||||| | Sbjct 82169 CTACCAGTCAGCTTAATTGGAATGAATTGCAAACTGATGTGTCAGTACATTGAATTTATC 82110 Query 61804 GCCGACCGTCTGTTGGTCG-ATTTGGGTATGAA 61835 || ||| | || | || | | |||| |||||| Sbjct 82109 GCAGACAGGCTACTAGTTGAACTTGGTTATGAA 82077 >seq15752 Length=398 Score = 131 bits (144), Expect = 1e-25 Identities = 219/317 (69%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 66224 CCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGA 66283 |||| || || || | |||||| | | ||||| ||||||||||| ||||| || Sbjct 326 CCTTCACGCTCATATTTTTCGTACAAATTGTCGAAATTTTCACCCCATAGTTCGGGCAAG 267 Query 66284 CATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATA 66343 | |||||||| || ||| ||| || | ||| | | | | ||| || || |||||| Sbjct 266 CCTGGACACTCATGAGGATCCATAAGTGTCCACTTATCGTTAGATTCAACGCGGCGCATA 207 Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403 || | ||||||||||||||||| |||| | || ||||| || ||| || ||| Sbjct 206 AACAAGTCAGGTATCCAGAGGGCAAAGAACAAGTCCCGTGCACGAATCTCTTCGGCGCCA 147 Query 66404 TGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463 |||||| |||| || | ||||| ||| | || | ||||| ||||| | ||| ||| Sbjct 146 GTATTTTTCCGCATTTCTATGAACTGAAATACATCAGGGTGCCAAGGTTCTAAGTACATG 87 Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAG 66523 || || | || ||| ||| || |||||||| || || || || | ||||| Sbjct 86 GCAAAGGCTCCTGGACGCTTGTTACCTCCTTGGTCAACATATCGTGCAGTGCTATTGAAT 27 Query 66524 ACACGCAACATCGGTAC 66540 |||||||||||||| || Sbjct 26 ACACGCAACATCGGGAC 10 >seq3397 Length=2750 Score = 111 bits (122), Expect = 1e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 66010 AAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGT 66069 || ||| || | || ||||||||| | ||||| || | | |||||| || |||||||| Sbjct 524 AATAGAGGCCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCGGT 465 Query 66070 GCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGC 66129 ||| || || || || || || ||||| | || || ||||| ||||||||||| | Sbjct 464 GCATAGGTTGCTACAACGAATTGTGCCTAGATGTTGGTGATTTGATTTGCGATTGCAAGA 405 Query 66130 ATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCC 66188 ||||||||||| ||| | ||| |||| || |||| ||| | ||||| || |||| || Sbjct 404 ATCCTTGTACAACATAAATGGATTGCCTGTTTCAATCTGGCATTCAATAATAGCGTACC 346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397423443529760