Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5310 239 4e-58 seq4842 122 7e-23 >seq5310 Length=161011 Score = 239 bits (264), Expect = 4e-58 Identities = 522/773 (68%), Gaps = 9/773 (1%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 ||||| || | |||||||| || ||| | ||||| |||| | ||||||||||||| Sbjct 63563 CGTTTTGTTCTTTTCCCCATAGAATATCATGATATCTGGCATTTCTACAAAAAGGCGGTG 63504 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG-CG 61172 ||||| |||||||| || || ||||| ||||||||||||||| | | | |||||| | Sbjct 63503 GCTTCTTTCTGGACTGTAGAAGAGGTGGATTTGTCCAAAGACTTCACACATTGGGAGTCA 63444 Query 61173 TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGA 61232 ||| | || |||| ||||| || | |||||||||| |||||||| || || Sbjct 63443 CTTA-AGGTTGGGGAACGTCATTTTATATCATATGTGTTGGCATTCTTTGCGGCGAGTGA 63385 Query 61233 CGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGC 61292 || || || || || ||| ||||||| || || ||||| || | |||||| Sbjct 63384 TGGAATAGTTCTAGAAAACTTACTGGAACGCTTTAGTCAAGAGGTACAGATCCCGGAGGT 63325 Query 61293 GCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGT 61352 || ||||| || || | ||||| || || |||||| | || || || |||||| | | Sbjct 63324 TCGCTGTTTTTATGGGATGCAGATAGCTATCGAGAATATTCATTCTGAAATGTACTCTCT 63265 Query 61353 TCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGA 61412 || ||||||||||| |||| || ||| | || | |||||||| || Sbjct 63264 ACTAATCGATACGTATATCAAAGACTCTAAAGAAAGAGACTTTCTTTTCAATGCTATAAG 63205 Query 61413 GACGATACCGGCGGTGAAGCG--GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACA 61470 | || | ||| |||| ||||| | ||||| || ||||||| | | Sbjct 63204 CAACCTAAC--TTGTGTAGCGAAAAAAGCTCAATGGGCATTGGATTGGATTGGTGATTCT 63147 Query 61471 ACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGT 61530 | | |||| |||| ||||| ||| | || ||||| | || || || || |||||| Sbjct 63146 AAGTCTACGTTTGCAGAACGCTTGGTTGCCTTTGCAGCAGTAGAAGGAGTTTTTTTCTCC 63087 Query 61531 GGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTC 61590 || || || || || |||||| ||||||| || ||||||||||| || || |||| Sbjct 63086 GGCAGCTTCGCGGCTATATTTTGGCTGAAGAAGCGAGGACTTATGCCTGGATTGTCCTTT 63027 Query 61591 AGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTC 61650 || |||||||| || | ||||| || | |||||||| || ||| | | || || Sbjct 63026 AGTAATGAGTTAATCAGTAGAGACGAAGGATTACATTGTGACTTCGCTTGTCTTCTGTTT 62967 Query 61651 AAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCG 61710 || | | || | | || | || || || || || | |||| | |||||| Sbjct 62966 AAGCAC-AT-TATTAAAAAG-CCTTCTAGGGTTCGCGTTGAGTCGATTATGAAGGAGGCG 62910 Query 61711 GTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAAT 61770 || |||||||| || |||||| |||| || ||||| ||| | || || |||||| Sbjct 62909 GTGCTAATCGAACAAGAGTTTCTGTCTGAAGCCTTGCCAGTCAGTTTAATTGGAATGAAT 62850 Query 61771 TGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823 || ||||||| |||||||||||||| |||| || || ||| |||| || Sbjct 62849 TGCAAGCTAATGTGCCAGTATATTGAATTCATTGCTGATCGGCTGCTGGTTGA 62797 >seq4842 Length=69696 Score = 122 bits (134), Expect = 7e-23 Identities = 221/320 (69%), Gaps = 4/320 (1%) Strand=Plus/Plus Query 66223 ACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAG 66282 ||||| ||||| || | || || || ||| || ||||||||| | ||| | || Sbjct 44105 ACCTTCACGTTCATATTTCTCATACAGAGCTTCAAATTTTTCACCCCACAGTTCAGGCAA 44164 Query 66283 ACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCAT 66342 | |||||| | || ||| ||| |||| ||| | | | | ||| || |||||||| Sbjct 44165 GCCTGGACATTCATGAGGATCCATTAGCGTCCACTTATCGTTTGATTCGACCCGACGCAT 44224 Query 66343 AAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG--TTGCTCCTCAATG 66400 ||| | |||||||||||||| || | || | ||| ||||| || || || || | Sbjct 44225 AAACAAGTCAGGTATCCAGAGTGCAAAAAATAAATCCCGTGCACGAATTTCTTCTGCAC- 44283 Query 66401 CCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAG 66460 | || |||||| |||| || | ||||| ||| | || | |||||| ||||||||||| Sbjct 44284 CAGT-ATTTTTCCGCATTTCTATGAACTGAAACACATCAGGATGCCAAGGTTCCAGGTAT 44342 Query 66461 ATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTG 66520 || || || | || || ||| || |||||||| || || || || | ||||| Sbjct 44343 ATAGCAAAGGCTCCAGGGCGCTTGTTACCCCCTTGGTCAACATATCGTGCAGTACTGTTG 44402 Query 66521 AAGACACGCAACATCGGTAC 66540 || ||||||||||| || || Sbjct 44403 AATACACGCAACATTGGGAC 44422 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 66023 TTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTG 66082 || ||||| ||| |||| || || | | || || || ||||| ||||| || || || Sbjct 42751 TTACAGACGGCTGTCTCATCTGGTGAAGAGTATTCAACTATTTCTGTGCATAGGTTGCTA 42810 Query 66083 CAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATC 66142 || || || ||||| |||| ||| || || ||||||||||| | ||| || |||| | Sbjct 42811 CAACGAATTGTGCCTAAATGCTGGTGGTTGGATTTGCGATTGCACGAATCTTTATACAAC 42870 Query 66143 ATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGC 66183 ||| | ||| | || || || | |||| | ||||| ||||| Sbjct 42871 ATGAAGGGATTACCTGTTTCGATTTGGCATTCAATAATGGC 42911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446633422720