Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq286 183 5e-44 seq36 147 3e-33 seq20 147 3e-33 seq5 143 4e-32 seq682 138 2e-30 seq40 122 1e-25 seq39 120 5e-25 seq34 111 2e-22 seq1 107 3e-21 >seq286 Length=4852 Score = 183 bits (202), Expect = 5e-44 Identities = 182/228 (80%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| ||||| |||||||| | ||||||||||||| | Sbjct 1668 GTACAAAGGGCAGGGACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGAATT-C 1611 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| || ||||||||| | ||||| |||||| | | |||||| | || Sbjct 1610 CTCGTTCAAGGGAAATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAAGGGGTT 1551 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | || ||| | ||| | || | || ||| | | ||||||||||||||||| Sbjct 1550 ACCAATATCTTTCGATAATGGTTACAG-CACGCTGATTCCTCCAGTGTAGCGCGCGTGCA 1492 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||| | |||||||||||||||||||||||||||||| ||| |||||| Sbjct 1491 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC-AACTTC 1446 >seq36 Length=9384253 Score = 147 bits (162), Expect = 3e-33 Identities = 171/224 (76%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 3011475 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 3011532 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||||||| | ||||| |||||| | | || || || Sbjct 3011533 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 3011592 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| | |||| ||||||| || | ||| |||||||| |||| Sbjct 3011593 GCCCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 3011652 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | |||||||||||||||||||||||||||||| ||||| Sbjct 3011653 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 3011695 >seq20 Length=54538 Score = 147 bits (162), Expect = 3e-33 Identities = 171/224 (76%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 3018 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 2961 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||||||| | ||||| |||||| | | || || || Sbjct 2960 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 2901 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| | |||| ||||||| || | ||| |||||||| |||| Sbjct 2900 GCCCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 2841 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | |||||||||||||||||||||||||||||| ||||| Sbjct 2840 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 2798 Score = 147 bits (162), Expect = 3e-33 Identities = 171/224 (76%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 12649 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 12592 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||||||| | ||||| |||||| | | || || || Sbjct 12591 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 12532 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| | |||| ||||||| || | ||| |||||||| |||| Sbjct 12531 GCCCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 12472 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | |||||||||||||||||||||||||||||| ||||| Sbjct 12471 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 12429 Score = 147 bits (162), Expect = 3e-33 Identities = 171/224 (76%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 28493 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 28436 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||||||| | ||||| |||||| | | || || || Sbjct 28435 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 28376 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| | |||| ||||||| || | ||| |||||||| |||| Sbjct 28375 GCCCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 28316 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | |||||||||||||||||||||||||||||| ||||| Sbjct 28315 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 28273 Score = 147 bits (162), Expect = 3e-33 Identities = 171/224 (76%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 38086 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 38029 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||||||| | ||||| |||||| | | || || || Sbjct 38028 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 37969 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| | |||| ||||||| || | ||| |||||||| |||| Sbjct 37968 GCCCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 37909 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | |||||||||||||||||||||||||||||| ||||| Sbjct 37908 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 37866 >seq5 Length=1607214 Score = 143 bits (158), Expect = 4e-32 Identities = 170/224 (76%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 1212720 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 1212777 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||||||| | ||||| |||||| | | || || || Sbjct 1212778 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 1212837 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| | |||| ||||||| || | ||| |||||||| |||| Sbjct 1212838 GCCCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 1212897 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | |||||||||||||||| ||||||||||||| ||||| Sbjct 1212898 GGCCCCGGACATCTAAGGGCATCATAGACCTGTTATTG-CTCAA 1212940 >seq682 Length=865254 Score = 138 bits (152), Expect = 2e-30 Identities = 169/224 (75%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 347780 GTACAAAGGGCAGGGACGTGATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 347837 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||||||| || || || |||||||| | || || || Sbjct 347838 CTCGTTCACGGGGAATAATTGCAAGCCTCGATTCCAGTCACGATGGTGATGAAACAGTTT 347897 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| | |||| ||||||| | | ||| ||||| || |||| Sbjct 347898 GCCCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTAGCACCGTCATTGTAGAGCACGTGT 347957 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | |||||||||||||||||||||||||||||| ||||| Sbjct 347958 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 348000 >seq40 Length=9743550 Score = 122 bits (134), Expect = 1e-25 Identities = 167/224 (75%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||| |||||||||||| ||| || ||||| |||||| | ||||| ||||||| || Sbjct 9030123 TACAAAAGGCAGGGACGTAATCAGTGCAAGCTT-ATGACTTCCACTTACCAGGAATT-CC 9030066 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCA-TCACGATGAA-ATTTCAAAGATT 119 ||||| | | || |||||||| | || ||||| |||||| | || | || || Sbjct 9030065 TCGTTTATGGGGAATAATTGCAA-GCCCTGACCCCAGTCACGACGGTGATGAGACAGTTT 9030007 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| |||| ||||||| || | ||| |||||||| |||| Sbjct 9030006 GCCCAATCCTTTCGGGTCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 9029947 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||| || |||||||||||||||||||||||||||||| ||||| Sbjct 9029946 AGCCTAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 9029904 >seq39 Length=20039393 Score = 120 bits (132), Expect = 5e-25 Identities = 165/224 (74%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | ||||| |||||| || ||||| ||||||| | Sbjct 2397514 GTACAAAGGGCAGGGACGTAATCAGCACAAGCTT-ATGACTTGCACTTACCAGGAATT-C 2397457 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 || ||| | | || |||||||| | ||||| || ||||| | || || || Sbjct 2397456 CTTGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCTCGATGGTGATGAAACAGTTT 2397397 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| |||| ||||||| || | ||| |||||||| |||| Sbjct 2397396 GCCCAACCCTTTCGGGTCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 2397337 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 | | | | |||| ||||||||||||||||||||||||| ||||| Sbjct 2397336 GACTCCGGACATTTAAGGGCATCACAGACCTGTTATTG-CTCAA 2397294 >seq34 Length=32115376 Score = 111 bits (122), Expect = 2e-22 Identities = 163/224 (73%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| || ||| || |||| ||||| ||| Sbjct 17466419 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATCACTTGCATTTACCAGGAA-TTC 17466362 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 |||||| | | || |||||||| | ||||| |||||| | || | || || Sbjct 17466361 CTCGTTTACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 17466302 Query 120 ACCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| | || ||||| | | ||| ||| || ||| | | |||| | |||| Sbjct 17466301 GCCCAACAATTTCAGGCCAGGTTTCCAGAATCGCTGGCACCATTAATATAGCACACGTGT 17466242 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | ||||||||||||||||||||||||||||| ||||| Sbjct 17466241 GGCCCCGGCCATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 17466199 >seq1 Length=65476681 Score = 107 bits (118), Expect = 3e-21 Identities = 153/209 (73%), Gaps = 5/209 (2%) Strand=Plus/Minus Query 16 ACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAA 75 ||||| ||| ||| ||||| |||||| || ||||| ||||||| ||||||| | | || Sbjct 36472227 ACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-CCTCGTTCACGGGGAA 36472170 Query 76 CAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATTACCCGGACCTGTCGG 134 |||||||| | ||||| |||||| | | || || || ||| ||| |||| Sbjct 36472169 TAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTTGCCCAACCCTTTCGG 36472110 Query 135 CCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTA 193 |||| ||||||| || | ||| |||||||| |||| ||||| | ||||||| Sbjct 36472109 GTCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACATCTA 36472050 Query 194 AGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||||||| |||| |||||||| ||||| Sbjct 36472049 AGGGCATCATAGACTTGTTATTG-CTCAA 36472022 Score = 91.5 bits (100), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||| ||||||||||| ||| ||| || || || || || ||||| ||||| | | Sbjct 41529190 GTAAAAAGAGCAGGGACGTAATCAGCGCAAGTTT-ATCACCTGCACTTACCAGGAACT-C 41529133 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || || ||||| | ||||| ||||| | | || || || Sbjct 41529132 CTCGTTCACGGGGAATAAATGCAAGCTCCGATCCCAGCCACGACGGTGATGAAACAGTTT 41529073 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| | || | |||| ||||||| || | ||| |||||||| |||| Sbjct 41529072 TCCCAACCCTTTTGGGCCAGGTTTCCAGACTCGCTGGTACCGTCATTGTAGCGCACGTGT 41529013 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 214 |||| | |||||||||| ||||||||||||||||| Sbjct 41529012 GGCCTCGGACATCTAAGGACATCACAGACCTGTTAT 41528977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751993552775