Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq36 183 6e-44 seq20 183 6e-44 seq286 154 3e-35 seq1 140 6e-31 seq40 131 3e-28 seq24 107 4e-21 seq642 93.3 8e-17 >seq36 Length=9384253 Score = 183 bits (202), Expect = 6e-44 Identities = 218/288 (76%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC---CAGGACTTTTACTTTGAAAAAATT 90 |||| ||||| || | |||||| |||||| | | | ||||||||||| ||||| Sbjct 3012479 TCCGGATGCCTTTAAACGGGTGTC---GGGAGCGGACGGCATCTTTACTTTGAACAAATT 3012423 Query 91 AGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGAC 148 ||||| ||||||||||||| || | ||| | | |||||||||||| |||||||| Sbjct 3012422 TGAGTGCTCAAAGCAGGCCTATGTGCCTGAAAATTCTTGCATGGAATAATGAAATAGGAC 3012363 Query 149 GTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGG 207 | |||||||||||||||||||| | ||| ||| |||||| |||| ||||| || |||| Sbjct 3012362 TT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGTTAAGAGGGACAGACGGG 3012305 Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGC 267 || | |||| ||| |||||||||||||| |||| |||| |||||| || Sbjct 3012304 GGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTGGGATCGCCGCCAGACAAACTACAGC 3012245 Query 268 GAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 |||||| || ||||| ||||||||||| ||||| || ||||||| || Sbjct 3012244 GAAAGCATTTGCCAAGAATGTTTTCATTGATCAG-GAGCGAAAGTCAG 3012198 >seq20 Length=54538 Score = 183 bits (202), Expect = 6e-44 Identities = 218/288 (76%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC---CAGGACTTTTACTTTGAAAAAATT 90 |||| ||||| || | |||||| |||||| | | | ||||||||||| ||||| Sbjct 2014 TCCGGATGCCTTTAAACGGGTGTC---GGGAGCGGACGGCATCTTTACTTTGAACAAATT 2070 Query 91 AGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGAC 148 ||||| ||||||||||||| || | ||| | | |||||||||||| |||||||| Sbjct 2071 TGAGTGCTCAAAGCAGGCCTATGTGCCTGAAAATTCTTGCATGGAATAATGAAATAGGAC 2130 Query 149 GTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGG 207 | |||||||||||||||||||| | ||| ||| |||||| |||| ||||| || |||| Sbjct 2131 TT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGTTAAGAGGGACAGACGGG 2188 Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGC 267 || | |||| ||| |||||||||||||| |||| |||| |||||| || Sbjct 2189 GGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTGGGATCGCCGCCAGACAAACTACAGC 2248 Query 268 GAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 |||||| || ||||| ||||||||||| ||||| || ||||||| || Sbjct 2249 GAAAGCATTTGCCAAGAATGTTTTCATTGATCAG-GAGCGAAAGTCAG 2295 Score = 183 bits (202), Expect = 6e-44 Identities = 218/288 (76%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC---CAGGACTTTTACTTTGAAAAAATT 90 |||| ||||| || | |||||| |||||| | | | ||||||||||| ||||| Sbjct 27489 TCCGGATGCCTTTAAACGGGTGTC---GGGAGCGGACGGCATCTTTACTTTGAACAAATT 27545 Query 91 AGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGAC 148 ||||| ||||||||||||| || | ||| | | |||||||||||| |||||||| Sbjct 27546 TGAGTGCTCAAAGCAGGCCTATGTGCCTGAAAATTCTTGCATGGAATAATGAAATAGGAC 27605 Query 149 GTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGG 207 | |||||||||||||||||||| | ||| ||| |||||| |||| ||||| || |||| Sbjct 27606 TT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGTTAAGAGGGACAGACGGG 27663 Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGC 267 || | |||| ||| |||||||||||||| |||| |||| |||||| || Sbjct 27664 GGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTGGGATCGCCGCCAGACAAACTACAGC 27723 Query 268 GAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 |||||| || ||||| ||||||||||| ||||| || ||||||| || Sbjct 27724 GAAAGCATTTGCCAAGAATGTTTTCATTGATCAG-GAGCGAAAGTCAG 27770 Score = 183 bits (202), Expect = 6e-44 Identities = 218/288 (76%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC---CAGGACTTTTACTTTGAAAAAATT 90 |||| ||||| || | |||||| |||||| | | | ||||||||||| ||||| Sbjct 37082 TCCGGATGCCTTTAAACGGGTGTC---GGGAGCGGACGGCATCTTTACTTTGAACAAATT 37138 Query 91 AGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGAC 148 ||||| ||||||||||||| || | ||| | | |||||||||||| |||||||| Sbjct 37139 TGAGTGCTCAAAGCAGGCCTATGTGCCTGAAAATTCTTGCATGGAATAATGAAATAGGAC 37198 Query 149 GTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGG 207 | |||||||||||||||||||| | ||| ||| |||||| |||| ||||| || |||| Sbjct 37199 TT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGTTAAGAGGGACAGACGGG 37256 Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGC 267 || | |||| ||| |||||||||||||| |||| |||| |||||| || Sbjct 37257 GGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTGGGATCGCCGCCAGACAAACTACAGC 37316 Query 268 GAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 |||||| || ||||| ||||||||||| ||||| || ||||||| || Sbjct 37317 GAAAGCATTTGCCAAGAATGTTTTCATTGATCAG-GAGCGAAAGTCAG 37363 Score = 172 bits (190), Expect = 1e-40 Identities = 217/288 (75%), Gaps = 15/288 (5%) Strand=Plus/Plus Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC---CAGGACTTTTACTTTGAAAAAATT 90 |||| ||||| || || |||||| |||||| | | | ||||||||||| ||||| Sbjct 11650 TCCGGATGCCTTTAAC-GGGTGTC---GGGAGCGGACGGCATCTTTACTTTGAACAAATT 11705 Query 91 AGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGAC 148 ||||| ||||||||||||| || | ||| | | |||||||||||| |||||||| Sbjct 11706 TGAGTGCTCAAAGCAGGCCTATGTGCCTGAAAATTCTTGCATGGAATAATGAAATAGGAC 11765 Query 149 GTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGG 207 | |||||||||||||||| |||| ||| ||| |||||| |||| ||||| || |||| Sbjct 11766 TT-CGGTTCTATTTTGTTGTTTTC--GGATCCGAAGTAATGGTTAAGAGGGACAGACGGG 11822 Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGC 267 || | |||| ||| ||||||||| |||| |||| |||| |||||| || Sbjct 11823 GGCATTTGTATGGCGGTGTTAGAGGTGAA-TTCTGGGATCGCCGCCAGACAAACTACAGC 11881 Query 268 GAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 |||||| || ||||| ||||||||||| ||||| || ||||||| || Sbjct 11882 GAAAGCATTTGCCAAGAATGTTTTCATTGATCAG-GAGCGAAAGTCAG 11928 >seq286 Length=4852 Score = 154 bits (170), Expect = 3e-35 Identities = 185/246 (75%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||| ||||||||||||||||| |||| || ||| ||| |||||| ||||||| Sbjct 782 TTTACCTTGAAAAAATTAGAGTGCTCAATGCGGGCTAATGCCTGAATACTCGTGCATGGA 841 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 ||||| ||||||| | |||||||||||||||||||| | | | ||||| |||| Sbjct 842 ATAATGAAATAGGATCT-CGGTTCTATTTTGTTGGTTTTCTGATCTGAGATAATGGTTAA 900 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA-TTTATTG 252 ||||| | |||||| | |||| || |||||||||||||||||| || | Sbjct 901 GAGGGACGGACGGGGGCATTCGTATCGCTGCGTGAGAGGTGAAATTCTTGGACCGTAGCG 960 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||| || ||||||||||| || ||||| |||| ||||||||||| |||||||||| Sbjct 961 -AGACGTACGACTGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAGT 1018 Query 313 TAGGGG 318 || || Sbjct 1019 CAGAGG 1024 >seq1 Length=65476681 Score = 140 bits (154), Expect = 6e-31 Identities = 210/288 (73%), Gaps = 13/288 (5%) Strand=Plus/Minus Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC---CAGGACTTTTACTTTGAAAAAATT 90 |||| ||||| || | |||||| |||||| | | | || |||||||| ||||| Sbjct 60148984 TCCGAATGCCTTTAAACGGGTGTC---GGGAGCGGACGGCATCTTCACTTTGAACAAATT 60148928 Query 91 AGAGTGTTCAAAGCAGGCCTTTGC-TC-GAATACATTAGCATGGAATAATAGAATAGGAC 148 ||||| ||||||||||||| || || ||| | | |||||||||||| ||||| || Sbjct 60148927 TGAGTGCTCAAAGCAGGCCTGTGTGTCTGAAAAGTCTTGCATGGAATAATGAAATAGAAC 60148868 Query 149 GTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGG 207 | |||||| ||||||| | ||| | ||| || |||||| |||| || || || | || Sbjct 60148867 TT-CGGTTCCATTTTGTCGATTT-TCGGATTCGAAGTAATGGTTAAGAGAGACAGACCGG 60148810 Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGC 267 ||| | ||| ||| |||||| ||||||| |||| |||| |||||| || Sbjct 60148809 GGTATTT-TATGGTGGTGTTAGAGGTAAAATTCTAGGATAGCCGCCAGACAAACTACAGC 60148751 Query 268 GAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 |||||| || ||||| ||||||||||| ||||| || ||||||| || Sbjct 60148750 GAAAGCATTTGCCAAGAATGTTTTCATTGATCAG-GAGCGAAAGTCAG 60148704 Score = 123 bits (136), Expect = 5e-26 Identities = 176/240 (73%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC-TC-GAATACATTAGCATG 131 ||||||||||| ||||| ||||| |||||||||| || || || ||| | | | || Sbjct 39931756 TTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGTCTGTGTGTCTGAAAATTCTTACGTG 39931815 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGAT 190 |||| || || ||||| | |||||||||||||||||||| | ||| || |||||| | Sbjct 39931816 GAATGATGAAACAGGACTT-CGGTTCTATTTTGTTGGTTT-TCGGATGCGAAGTAATGGT 39931873 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| || |||||| | |||| ||| | ||||||||| | |||| Sbjct 39931874 TAAGAGGGACAGACGGGGGCATTTGTATGGCGGTGTTACGGGTGAAATTGTGGGATCGCC 39931933 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||| ||| || |||||||| || |||| || |||||||| ||||| || ||||| Sbjct 39931934 GCCAGACAAACAACAGCGAAAGCATTTGCCAAAAATATTTTCATTGATCAG-GAGCGAAA 39931992 >seq40 Length=9743550 Score = 131 bits (144), Expect = 3e-28 Identities = 146/190 (77%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTA 185 |||||||||||| |||||||| | |||||||||||||||||||| | ||| ||| ||| Sbjct 9029215 GCATGGAATAATGAAATAGGACTT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTA 9029272 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 || |||| ||||| || |||||| | || | ||| ||| |||||||||| ||| Sbjct 9029273 GTGGTTAAGAGGGACAGACGGGGGCATTTGTGTGGGGGTGTTAGAAGTGAAATTCTGGGA 9029332 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 || |||| |||||| |||||||| || ||||| ||||||||||| ||||| || Sbjct 9029333 TTGCCGCCAGACAAACTACAGCGAAAGCATTTGCCAAGAATGTTTTCATTGATCAG-GAG 9029391 Query 306 CGAAAGTTAG 315 | ||||| || Sbjct 9029392 CAAAAGTCAG 9029401 >seq24 Length=1628177 Score = 107 bits (118), Expect = 4e-21 Identities = 140/186 (75%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAAT 187 |||||||||| || ||||| | |||||||||||||||||||| | ||| ||| ||||| Sbjct 1044293 ATGGAATAATGAAAAAGGACTT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAAT 1044350 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTG-TCAGAGGTGAAATTCTTGGAT 246 | |||| || ||||| | |||| | |||| || | |||| ||||||||| |||| Sbjct 1044351 GGTTAAGAGCGATAGACAGGGGCATTTGTATGGCTGTGCTAAGAG-TGAAATTCTGGGAT 1044409 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 |||| |||||| | |||||| || ||||| ||||||||||| ||||| | | Sbjct 1044410 CGCCGCCAGACAAACTACAGTGAAAGCATTTGCCAAGAATGTTTTCATTGATCAG-AAGC 1044468 Query 307 GAAAGT 312 |||||| Sbjct 1044469 GAAAGT 1044474 >seq642 Length=401255 Score = 93.3 bits (102), Expect = 8e-17 Identities = 121/161 (75%), Gaps = 11/161 (7%) Strand=Plus/Minus Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC---CAGGACTTTTACTTTGAAAAAATT 90 |||| |||| ||| | |||||| |||||| | | || ||||||||||| ||||| Sbjct 358443 TCCGGATGCTCTTAAACGGGTGTC---GGGAGCGGACGGCACCTTTACTTTGAACAAATT 358387 Query 91 AGAGTGTTCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGAC 148 |||| ||||| |||||| | ||| ||| | ||||| ||||||||| ||| |||| Sbjct 358386 TGAGTACTCAAATCAGGCCTGTGTGCCTGAAAATTTTAGCGTGGAATAATGAAATTGGAC 358327 Query 149 GTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATG 188 | | |||||||||||||||||| | ||| ||| |||||| Sbjct 358326 -TTCAGTTCTATTTTGTTGGTTT-TGGGATCCGAAGTAATG 358288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915191900480