Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13]
885 sequences; 364,532,842 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq286 154 6e-35
seq20 149 3e-33
seq5 149 3e-33
seq19 145 3e-32
seq673 136 2e-29
seq26 136 2e-29
seq22 118 4e-24
>seq286
Length=4852
Score = 154 bits (170), Expect = 6e-35
Identities = 112/130 (86%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||| || || ||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 3986 AGAGCGTATATGCTGGGACCCGAAAGATGGTGAACTATACCTGAGCAGGATGAAGCCAGA 4045
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
||||||||||||| ||| || |||| ||||| ||||||||||||||||| | || |||
Sbjct 4046 GGAAACTCTGGTGAAGGTCCGAAGCGATTCTGACGTGCAAATCGATCGTCTGACTTTGGT 4105
Query 674 ATAGGGGCGA 683
||||||||||
Sbjct 4106 ATAGGGGCGA 4115
Score = 116 bits (128), Expect = 2e-23
Identities = 124/161 (77%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||||||| || |||||| | || ||| |||||| || ||||| |||||||
Sbjct 3171 GAGTCGGGTTGTTTGAGATTGCAGCCCAAAGAGGGTGGTAAACCTCATCTAAGGCTAAAT 3230
Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
| | ||| |||||||||||| ||||||| |||| ||||| || |||| |||||| |
Sbjct 3231 AC-GACCATGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGAACTTTGAA 3289
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| || || ||||||| | ||| | |||| ||
Sbjct 3290 GAGAGAGTTCAAGAGGGCGTGAAACCGCTGAGATGGAAACG 3330
>seq20
Length=54538
Score = 149 bits (164), Expect = 3e-33
Identities = 114/135 (84%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| |||||| || |||| |||||||||||||||||||||||| || ||| |||||
Sbjct 5292 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAAG 5351
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||| ||||| |||||||||||||||| ||
Sbjct 5352 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACG 5411
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 5412 TGAGTATAGGGGCGA 5426
Score = 149 bits (164), Expect = 3e-33
Identities = 114/135 (84%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| |||||| || |||| |||||||||||||||||||||||| || ||| |||||
Sbjct 14914 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAAG 14973
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||| ||||| |||||||||||||||| ||
Sbjct 14974 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACG 15033
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 15034 TGAGTATAGGGGCGA 15048
Score = 145 bits (160), Expect = 3e-32
Identities = 114/135 (84%), Gaps = 1/135 (1%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| |||||| || |||| |||||||||||||||||||||||| || ||| |||||
Sbjct 30753 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGG-TGAAG 30811
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||| ||||| |||||||||||||||| ||
Sbjct 30812 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACG 30871
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 30872 TGAGTATAGGGGCGA 30886
>seq5
Length=1607214
Score = 149 bits (164), Expect = 3e-33
Identities = 114/135 (84%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| |||||| || |||| |||||||||||||||||||||||| || ||| |||||
Sbjct 1210446 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAAG 1210387
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||| ||||| |||||||||||||||| ||
Sbjct 1210386 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAAAG 1210327
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 1210326 TGAGTATAGGGGCGA 1210312
>seq19
Length=353814
Score = 145 bits (160), Expect = 3e-32
Identities = 113/135 (84%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| |||||| || |||| |||||||||||||||||||||| | || ||| |||||
Sbjct 2290 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATACTTGTGAAGGTTGAAG 2349
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||| ||||| |||||||||||||||| ||
Sbjct 2350 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACG 2409
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 2410 TGAGTATAGGGGCGA 2424
>seq673
Length=737949
Score = 136 bits (150), Expect = 2e-29
Identities = 111/135 (82%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| |||||| || |||| ||||||||||||||||||||||| || ||| |||||
Sbjct 702389 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGATTGTGGAGGTTGAAG 702330
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
||||||||||||||||||||| || |||| ||||| ||||||||||||||| ||
Sbjct 702329 ACAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGATGTGCAAATCGATCGTATAACG 702270
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 702269 TGAGTATAGGGGCGA 702255
>seq26
Length=1254325
Score = 136 bits (150), Expect = 2e-29
Identities = 111/135 (82%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| |||||| || |||| |||||||||||||||||||||||| | ||| |||||
Sbjct 675706 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTATGAAGGTTGAAG 675765
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
||||| |||||||||||||||| | |||| ||||| |||||||||||||||| ||
Sbjct 675766 CCAGAAGAAACTCTGGTGGAGGACCTTAGCGATTCTGACGTGCAAATCGATCGTATAACG 675825
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 675826 TGAGTATAGGGGCGA 675840
>seq22
Length=27965507
Score = 118 bits (130), Expect = 4e-24
Identities = 106/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| |||||| || |||| ||| ||||||||||||||||||| || ||| | |||
Sbjct 5233103 GAGCAAGAGCGTACACGTTGAGACTTGAAAGATGGTGAACTATGCTTGTGAAGGTTAAAG 5233162
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| | | |||||||||| ||||| |||||||| | |
Sbjct 5233163 CCAGAGGAAACTCTGGTGGAGGATGGTAGCGGTTCTGACGTGCGAATCGATCATATGACG 5233222
Query 669 TGGGTATAGGGGC 681
|| || |||||||
Sbjct 5233223 TGAGTGTAGGGGC 5233235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079981016750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |