Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq286 154 6e-35 seq20 149 3e-33 seq5 149 3e-33 seq19 145 3e-32 seq673 136 2e-29 seq26 136 2e-29 seq22 118 4e-24 >seq286 Length=4852 Score = 154 bits (170), Expect = 6e-35 Identities = 112/130 (86%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || || ||||||||||||||||||||||||| ||||| ||| |||||||||| Sbjct 3986 AGAGCGTATATGCTGGGACCCGAAAGATGGTGAACTATACCTGAGCAGGATGAAGCCAGA 4045 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||| ||| || |||| ||||| ||||||||||||||||| | || ||| Sbjct 4046 GGAAACTCTGGTGAAGGTCCGAAGCGATTCTGACGTGCAAATCGATCGTCTGACTTTGGT 4105 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 4106 ATAGGGGCGA 4115 Score = 116 bits (128), Expect = 2e-23 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| || |||||| | || ||| |||||| || ||||| ||||||| Sbjct 3171 GAGTCGGGTTGTTTGAGATTGCAGCCCAAAGAGGGTGGTAAACCTCATCTAAGGCTAAAT 3230 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | | ||| |||||||||||| ||||||| |||| ||||| || |||| |||||| | Sbjct 3231 AC-GACCATGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGAACTTTGAA 3289 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| | ||| | |||| || Sbjct 3290 GAGAGAGTTCAAGAGGGCGTGAAACCGCTGAGATGGAAACG 3330 >seq20 Length=54538 Score = 149 bits (164), Expect = 3e-33 Identities = 114/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || |||| |||||||||||||||||||||||| || ||| ||||| Sbjct 5292 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAAG 5351 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||| || Sbjct 5352 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACG 5411 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 5412 TGAGTATAGGGGCGA 5426 Score = 149 bits (164), Expect = 3e-33 Identities = 114/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || |||| |||||||||||||||||||||||| || ||| ||||| Sbjct 14914 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAAG 14973 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||| || Sbjct 14974 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACG 15033 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 15034 TGAGTATAGGGGCGA 15048 Score = 145 bits (160), Expect = 3e-32 Identities = 114/135 (84%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || |||| |||||||||||||||||||||||| || ||| ||||| Sbjct 30753 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGG-TGAAG 30811 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||| || Sbjct 30812 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACG 30871 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 30872 TGAGTATAGGGGCGA 30886 >seq5 Length=1607214 Score = 149 bits (164), Expect = 3e-33 Identities = 114/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || |||| |||||||||||||||||||||||| || ||| ||||| Sbjct 1210446 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAAG 1210387 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||| || Sbjct 1210386 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAAAG 1210327 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 1210326 TGAGTATAGGGGCGA 1210312 >seq19 Length=353814 Score = 145 bits (160), Expect = 3e-32 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || |||| |||||||||||||||||||||| | || ||| ||||| Sbjct 2290 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATACTTGTGAAGGTTGAAG 2349 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||| || Sbjct 2350 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACG 2409 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 2410 TGAGTATAGGGGCGA 2424 >seq673 Length=737949 Score = 136 bits (150), Expect = 2e-29 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || |||| ||||||||||||||||||||||| || ||| ||||| Sbjct 702389 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGATTGTGGAGGTTGAAG 702330 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||||||||||||||||||||| || |||| ||||| ||||||||||||||| || Sbjct 702329 ACAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGATGTGCAAATCGATCGTATAACG 702270 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 702269 TGAGTATAGGGGCGA 702255 >seq26 Length=1254325 Score = 136 bits (150), Expect = 2e-29 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || |||| |||||||||||||||||||||||| | ||| ||||| Sbjct 675706 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTATGAAGGTTGAAG 675765 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||||| |||||||||||||||| | |||| ||||| |||||||||||||||| || Sbjct 675766 CCAGAAGAAACTCTGGTGGAGGACCTTAGCGATTCTGACGTGCAAATCGATCGTATAACG 675825 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 675826 TGAGTATAGGGGCGA 675840 >seq22 Length=27965507 Score = 118 bits (130), Expect = 4e-24 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || |||| ||| ||||||||||||||||||| || ||| | ||| Sbjct 5233103 GAGCAAGAGCGTACACGTTGAGACTTGAAAGATGGTGAACTATGCTTGTGAAGGTTAAAG 5233162 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| | | |||||||||| ||||| |||||||| | | Sbjct 5233163 CCAGAGGAAACTCTGGTGGAGGATGGTAGCGGTTCTGACGTGCGAATCGATCATATGACG 5233222 Query 669 TGGGTATAGGGGC 681 || || ||||||| Sbjct 5233223 TGAGTGTAGGGGC 5233235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079981016750