Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq36 95.1 7e-18 seq20 95.1 7e-18 seq5 91.5 9e-17 seq578 86.0 4e-15 seq39 86.0 4e-15 seq34 86.0 4e-15 seq1 86.0 4e-15 seq682 82.4 5e-14 seq673 75.2 7e-12 seq564 75.2 7e-12 >seq36 Length=9384253 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 3011435 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 3011492 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 3011493 TAAT-CAGCGCAAGCT 3011507 >seq20 Length=54538 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 3058 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 3001 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 3000 TAAT-CAGCGCAAGCT 2986 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 12689 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 12632 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 12631 TAAT-CAGCGCAAGCT 12617 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 28533 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 28476 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 28475 TAAT-CAGCGCAAGCT 28461 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 38126 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 38069 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 38068 TAAT-CAGCGCAAGCT 38054 >seq5 Length=1607214 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1212680 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTATGTACAAAGGGCAGGGACG 1212737 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 1212738 TAAT-CAGCGCAAGCT 1212752 >seq578 Length=36554 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| | ||| ||||| |||||||||||||||||||| Sbjct 13211 CTCACTAAACCATT-CAATCGGTAGTA-GTGACTGGCGGTGTGTACAAAGGGCAGGGACG 13268 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 13269 TAAT-CAGCGCAAGCT 13283 >seq39 Length=20039393 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| |||||||||| |||||||||||||||||||| Sbjct 2397554 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGCTGTGTACAAAGGGCAGGGACG 2397497 Query 109 TAATACAACGCAAGCT 124 |||| || | |||||| Sbjct 2397496 TAAT-CAGCACAAGCT 2397482 >seq34 Length=32115376 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| | ||| ||||| |||||||||||||||||||| Sbjct 17466459 CTCACTAAACCATT-CAATCGGTAGTA-GTGACTGGCGGTGTGTACAAAGGGCAGGGACG 17466402 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 17466401 TAAT-CAGCGCAAGCT 17466387 >seq1 Length=65476681 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||| ||||| ||||| |||||||||||||| Sbjct 60147941 CTCACTAAACCATT-CAATCGGTAGTA-GCGACAGGCGGTGTGTAAAAAGGGCAGGGACG 60147998 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 60147999 TAAT-CAGCGCAAGCT 60148013 Score = 73.4 bits (80), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||| || ||||| || ||||||||| |||||||||| ||||| |||| ||||||||| Sbjct 41529230 CTCACCAAACCATT-CAATCGGTAGTA-GCGACGGGCGCTGTGTAAAAAGAGCAGGGACG 41529173 Query 109 TAATACAACGCAAG 122 |||| || |||||| Sbjct 41529172 TAAT-CAGCGCAAG 41529160 >seq682 Length=865254 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||| ||| ||||| || ||||||||| | ||||||||| |||||||||||||||||||| Sbjct 347740 CTCATTAAACCATT-CAATCGGTAGTA-GTGACGGGCGGTGTGTACAAAGGGCAGGGACG 347797 Query 109 TAATACAACGCAAGCT 124 | || || |||||||| Sbjct 347798 TGAT-CAGCGCAAGCT 347812 >seq673 Length=737949 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||| || || ||||||||||| |||||||||||||||||||||||| || ||||| Sbjct 703170 TTCAATCGATAATA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAGCGCAA 703227 Query 122 GCT 124 ||| Sbjct 703228 GCT 703230 >seq564 Length=29324 Score = 75.2 bits (82), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || |||||| |||| ||| ||||| |||||||||||||||||||| Sbjct 4979 CTCACTAAAGCATT-CAATCGGTA-TAAGTGACTGGCGGTGTGTACAAAGGGCAGGGACG 4922 Query 109 TAATACAACGCAAGC 123 |||| || |||||| Sbjct 4921 TAAT-CAGTGCAAGC 4908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300797504300