Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq286 87.8 2e-15 seq36 75.2 1e-11 seq20 75.2 1e-11 >seq286 Length=4852 Score = 87.8 bits (96), Expect = 2e-15 Identities = 79/98 (81%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||| |||||||||||| |||||| ||| Sbjct 878 AAACCAACAAAATAGAACCG-AGATCCTATTTCATTATTCCATGCACGAGTATTCAGGCA 820 Query 70 TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | |||| || |||| |||||||||||| |||||||||| Sbjct 819 TTAGCCCGCATTGAGCACTCTAATTTTTTCAAGGTAAA 782 >seq36 Length=9384253 Score = 75.2 bits (82), Expect = 1e-11 Identities = 78/100 (78%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | |||||||| |||||||||||| | | ||| ||| Sbjct 3012341 AAACCAACAAAATAGAACCGAA-GTCCTATTTCATTATTCCATGCAAGAATTTTCAGGCA 3012399 Query 70 --TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || ||||||||||| ||||| ||||| |||| ||||| Sbjct 3012400 CATAGGCCTGCTTTGAGCACTCAAATTTGTTCAAAGTAAA 3012439 >seq20 Length=54538 Score = 75.2 bits (82), Expect = 1e-11 Identities = 78/100 (78%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | |||||||| |||||||||||| | | ||| ||| Sbjct 2152 AAACCAACAAAATAGAACCGAA-GTCCTATTTCATTATTCCATGCAAGAATTTTCAGGCA 2094 Query 70 --TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || ||||||||||| ||||| ||||| |||| ||||| Sbjct 2093 CATAGGCCTGCTTTGAGCACTCAAATTTGTTCAAAGTAAA 2054 Score = 75.2 bits (82), Expect = 1e-11 Identities = 78/100 (78%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | |||||||| |||||||||||| | | ||| ||| Sbjct 27627 AAACCAACAAAATAGAACCGAA-GTCCTATTTCATTATTCCATGCAAGAATTTTCAGGCA 27569 Query 70 --TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || ||||||||||| ||||| ||||| |||| ||||| Sbjct 27568 CATAGGCCTGCTTTGAGCACTCAAATTTGTTCAAAGTAAA 27529 Score = 75.2 bits (82), Expect = 1e-11 Identities = 78/100 (78%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | |||||||| |||||||||||| | | ||| ||| Sbjct 37220 AAACCAACAAAATAGAACCGAA-GTCCTATTTCATTATTCCATGCAAGAATTTTCAGGCA 37162 Query 70 --TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || ||||||||||| ||||| ||||| |||| ||||| Sbjct 37161 CATAGGCCTGCTTTGAGCACTCAAATTTGTTCAAAGTAAA 37122 Score = 73.4 bits (80), Expect = 5e-11 Identities = 78/101 (77%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 9 GAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGC 68 |||| ||||||||||| || | |||||||| |||||||||||| | | ||| ||| Sbjct 11788 GAAAACAACAAAATAGAACCGAA-GTCCTATTTCATTATTCCATGCAAGAATTTTCAGGC 11730 Query 69 G--TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || ||||||||||| ||||| ||||| |||| ||||| Sbjct 11729 ACATAGGCCTGCTTTGAGCACTCAAATTTGTTCAAAGTAAA 11689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595194897090