Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq115 100 5e-19 seq20 100 5e-19 seq36 95.1 2e-17 seq21 95.1 2e-17 seq5 95.1 2e-17 seq1 80.6 4e-13 >seq115 Length=3270 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| || | || | || | | || | Sbjct 1588 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCATGTGCTTGGCCGATCGGCCAAT 1531 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1530 GGTGCGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 1477 >seq20 Length=54538 Score = 100 bits (110), Expect = 5e-19 Identities = 93/114 (82%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| |||||||| | || | ||||| || | || | Sbjct 33308 GTACGAGAGGAACCGCAGG-TTCAGA-TAATTGGTATATGTGCCTGTC-GAAAGGCCAAT 33364 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||| | ||||||||||||||||| |||||| Sbjct 33365 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCC 33418 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| |||||||| | || | ||| || | || | Sbjct 7872 GTACGAGAGGAACCGCAGG-TTCAGA-TAATTGGTATATGTGCCTGGTCGAAAGGCCAAT 7929 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||| | ||||||||||||||||| |||||| Sbjct 7930 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCC 7983 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| |||||||| | || | ||| || | || | Sbjct 23702 GTACGAGAGGAACCGCAGG-TTCAGA-TAATTGGTATATGTGCCTGGTCGAAAGGCCAAT 23759 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||| | ||||||||||||||||| |||||| Sbjct 23760 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCC 23813 >seq36 Length=9384253 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| |||||||| | || | ||| || | || | Sbjct 3014004 GTACGAGAGGAACCGCAGG-TTCAGA-TAATTGGTATATGTGCCTGGTCGAAAGGCCAAT 3013947 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||| | ||||||||||||||||| |||||| Sbjct 3013946 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCC 3013893 >seq21 Length=28441 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| |||||||| | || | ||| || | || | Sbjct 2603 GTACGAGAGGAACCGCAGG-TTCAGA-TAATTGGTATATGTGCCTGGTCGAAAGGCCAAT 2546 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||| | ||||||||||||||||| |||||| Sbjct 2545 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCC 2492 >seq5 Length=1607214 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| |||||||| | || | ||| || | || | Sbjct 1226098 GTACGAGAGGAACCGCAGG-TTCAGA-TAATTGGTATATGTGCCTGGTCGAAAGGCCAAT 1226155 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||| | ||||||||||||||||| |||||| Sbjct 1226156 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCC 1226209 >seq1 Length=65476681 Score = 80.6 bits (88), Expect = 4e-13 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAG- 59 |||| ||||||||||| | |||||| |||||||| | || | ||| || |||| | Sbjct 33257267 GTACAAGAGGAACCGCAGG-TTCAGA-TAATTGGTATATGTGCCTGGTCGAA-AGGCCGA 33257211 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || |||||||||||||||| |||||| | |||||||| |||| ||| |||||| Sbjct 33257210 TGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCTTCTATGTCTGAATCC 33257156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819192976640