Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq862 178 1e-39 seq34 118 8e-22 >seq862 Length=148971 Score = 178 bits (196), Expect = 1e-39 Identities = 515/786 (66%), Gaps = 10/786 (1%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 |||||||| | |||||||| || || | ||| | |||| | || || ||||| | | Sbjct 29675 CGTTTCGTCCTTTTCCCCATAGAATACCACGATGTCTGGCATTTTTATAAGAAGGCTGTA 29734 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 || || || ||||| ||||| ||||||||||| |||||||| | | | |||||| | Sbjct 29735 GCCTCTTTTTGGACTGTGGAAGAGGTCGATTTATCCAAAGATTTCATACATTGGGAGTCT 29794 Query 61174 TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGAC 61233 ||| || |||| |||||||| | ||||| || |||||||| || ||| Sbjct 29795 TTAAAAGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCCTTCTTTGCGGCGAGTGAC 29854 Query 61234 GGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCG 61293 || || ||| ||||| | ||||||| ||| || || || || | | |||| Sbjct 29855 GGAATTGTCCTCGAGAACCTCCTGGAACGCTTCAGCCAAGAAGTCCAGATTCCAGAGGTT 29914 Query 61294 CGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTT 61353 ||||||||||| || | ||||| || || |||||| | ||||| || |||||| | | Sbjct 29915 CGTTGTTTCTATGGGATGCAGATAGCTATCGAGAATATTCACTCTGAAATGTACTCTTTA 29974 Query 61354 CTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAG 61413 | || ||||| ||||||| || ||| | || | ||||| ||||| Sbjct 29975 TTGATTGATACATACATCAAAGACTCTAAAGAAAGGGACTTTCTCTTCAACGCCATAAGC 30034 Query 61414 ACGATACCGGCGGTGAAGCGGAAA--GCGGATTGGGCCTTCAATTGGATCACCAGTACAA 61471 | || | ||| || ||| || | ||||| || ||||||| | | | Sbjct 30035 AACTTAAC--TTGTGTTGCTAAAAAGGCTCAGTGGGCATTAGATTGGATTGGTGATTCTA 30092 Query 61472 CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTG 61531 |||| |||| ||||| || | || ||||| | || || ||||| ||||| || Sbjct 30093 AATCTACTTTTGCAGAACGCTTAGTTGCTTTTGCAGCAGTGGAAGGTGTCTTTTTTTCTG 30152 Query 61532 GATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCA 61591 | ||||| || || || ||| | |||||||| || |||||||| || ||| | || | Sbjct 30153 GTAGCTTTGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTA 30212 Query 61592 GCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCA 61651 ||||||| || || | ||||| || | ||||||||||| ||| | | | || | Sbjct 30213 GCAATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGTCTATTGTTTA 30272 Query 61652 AACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTG-TGGGTGAGATTGTTCGTGAGGCG 61710 ||| || | | || || | | || |||| || || | || | | |||||| Sbjct 30273 AAC---ATATTATCAAAAAGCCTCCCAAAGAACGTGTTGAGTCA-ATAATAAGAGAGGCG 30328 Query 61711 GTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAAT 61770 || || |||||||| ||| | | || || | || ||| | || || |||||| Sbjct 30329 GTTCTGATAGAACAGGAGTTTTTATCCGAAGCCCTACCAGTCAGCTTAATTGGGATGAAT 30388 Query 61771 TGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGG 61829 || | | |||| ||||| ||||||||| | || ||| | || |||| | | |||| Sbjct 30389 TGCAAATTGATGTGTCAGTACATTGAATTTATCGCTGACAGGCTACTGGTTGAACTTGGT 30448 Query 61830 TATGAA 61835 |||||| Sbjct 30449 TATGAA 30454 >seq34 Length=32115376 Score = 118 bits (130), Expect = 8e-22 Identities = 219/319 (69%), Gaps = 2/319 (1%) Strand=Plus/Plus Query 66223 ACCTTTGCGTTCGTAATGTTCGTAGAG-GTGTTCGAAGGATTCACCCCATACTTCGGACA 66281 ||||| || || || | ||| || | |||| |||| ||||||||||||||| | || Sbjct 8065340 ACCTTCACGCTCATATTTTTCATACAAAGTGT-CGAAATCTTCACCCCATACTTCAGGCA 8065398 Query 66282 GACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCA 66341 | |||||||| || ||| ||| || | ||| | | | | ||| || || |||| Sbjct 8065399 AGCCTGGACACTCATGAGGATCCATTAGTGTCCACTTATCGTTGGATTCAACGCGGCGCA 8065458 Query 66342 TAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGC 66401 | || | ||||||||||||||||| |||| | || ||||| || || || || Sbjct 8065459 TGAACAAGTCAGGTATCCAGAGGGCAAAGAACAAGTCCCGTGCACGAATTTCTTCGGCGC 8065518 Query 66402 CGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGA 66461 | |||||| |||| || | ||||| ||| | || | ||||| ||||| | ||| | Sbjct 8065519 CAGTATTTTTCCGCATTTCTATGAACTGAAACACATCAGGGTGCCAAGGTTCTAAGTACA 8065578 Query 66462 TGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGA 66521 |||| || | || ||| ||| || ||||||||||| || || || | |||| Sbjct 8065579 TGGCAAAGGCTCCTGGACGCTTGTTACCTCCTTGGTCGACATATCGTGCAGTGCTATTGA 8065638 Query 66522 AGACACGCAACATCGGTAC 66540 | || ||||||||||| || Sbjct 8065639 ATACGCGCAACATCGGGAC 8065657 Score = 114 bits (126), Expect = 1e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66023 TTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTG 66082 || ||||||||| | ||||| || | | |||||| || ||||| ||||| ||||| ||| Sbjct 8064721 TTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTG 8064780 Query 66083 CAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATC 66142 || || || ||||| | || ||| ||||| || |||||||| | ||||||||||| | Sbjct 8064781 CAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAAC 8064840 Query 66143 ATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCC 66188 ||| | ||| |||| || |||| || | ||||| || |||| || Sbjct 8064841 ATGAATGGATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACC 8064886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563711856400