Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq10665 147 3e-33
seq2921 147 3e-33
seq16921 143 4e-32
seq711 129 9e-28
seq1136 123 4e-26
seq9662 116 6e-24
seq5378 104 4e-20
seq781 104 4e-20
seq2456 93.3 6e-17
seq1733 89.7 8e-16
seq9275 77.0 5e-12
>seq10665
Length=8850
Score = 147 bits (162), Expect = 3e-33
Identities = 171/224 (76%), Gaps = 5/224 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| |
Sbjct 7794 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 7851
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119
|||||| | | || |||||||| | ||||| |||||| | | || || ||
Sbjct 7852 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 7911
Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
||| ||| |||| | |||| ||||||| || | ||| |||||||| ||||
Sbjct 7912 GCCCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 7971
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 7972 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 8014
>seq2921
Length=35972
Score = 147 bits (162), Expect = 3e-33
Identities = 171/224 (76%), Gaps = 5/224 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| |
Sbjct 20775 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 20718
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119
|||||| | | || |||||||| | ||||| |||||| | | || || ||
Sbjct 20717 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 20658
Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
||| ||| |||| | |||| ||||||| || | ||| |||||||| ||||
Sbjct 20657 GCCCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 20598
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 20597 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 20555
Score = 147 bits (162), Expect = 3e-33
Identities = 171/224 (76%), Gaps = 5/224 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| |
Sbjct 21819 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 21762
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119
|||||| | | || |||||||| | ||||| |||||| | | || || ||
Sbjct 21761 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 21702
Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
||| ||| |||| | |||| ||||||| || | ||| |||||||| ||||
Sbjct 21701 GCCCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 21642
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 21641 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 21599
>seq16921
Length=2467
Score = 143 bits (158), Expect = 4e-32
Identities = 170/224 (76%), Gaps = 5/224 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| |
Sbjct 734 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 791
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119
|||||| | | || |||||||| | ||||| |||||| | | || || ||
Sbjct 792 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 851
Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
| | ||| |||| | |||| ||||||| || ||||| |||||||| ||||
Sbjct 852 GCGCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCATCATTGTAGCGCACGTGT 911
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
||| | | |||||||||||||||||||||||||||||| |||||
Sbjct 912 GGCTCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 954
>seq711
Length=71778
Score = 129 bits (142), Expect = 9e-28
Identities = 166/220 (75%), Gaps = 7/220 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||| |||
Sbjct 6034 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAA-TTC 5977
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCT-ATCCCCATCACGA-TGAAATTTCAAAGAT 118
|||||| | | | ||| |||| | || ||||| |||||| | || | || |
Sbjct 5976 CTCGTTCACGGGGATTAATCGCAA-GCCCTGATCCCAGTCACGACGGTGATAAAACAGTT 5918
Query 119 TACCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177
| ||| | ||| || ||||| | | ||||||| || | ||| |||||||| ||||
Sbjct 5917 TGCCCAGCCCTTTCAGGCCAGGTTCCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTG 5858
Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
| ||| | ||||||||||||| |||||||||||||||||
Sbjct 5857 TGACCCCGGACATCTAAGGGCA-CACAGACCTGTTATTGC 5819
>seq1136
Length=60186
Score = 123 bits (136), Expect = 4e-26
Identities = 164/223 (74%), Gaps = 15/223 (7%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||| ||||| |||||| || ||||||||||| | |
Sbjct 36194 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACTAGGAA-TCC 36137
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|||||| | | || |||||||| || ||| || || | || ||
Sbjct 36136 CTCGTTCACGGGGAATAATTGCAA---------GTCACGACGGTG--ATGATACAGTTTG 36088
Query 121 CCCGGACCTGTCG-GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||| ||| ||| |||| | | ||||||| || | ||| |||||||| | || |
Sbjct 36087 CCCAACCCTTTCGAGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACTTGTG 36028
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
|||| | |||||||||||||||||||||||||||||| |||||
Sbjct 36027 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 35986
>seq9662
Length=10629
Score = 116 bits (128), Expect = 6e-24
Identities = 164/224 (73%), Gaps = 5/224 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||| | |||||||| ||| | | ||||| |||||| || ||||| ||||||| |
Sbjct 2345 GTACAAAGGACTGGGACGTAATCAGCTCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 2288
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119
|||||| | | || |||| ||| | ||||| |||||| | | || || ||
Sbjct 2287 CTCGTTCACGGGGAATAATTACAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 2228
Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
||| || |||| | |||| ||||||| || | ||| |||||||| ||||
Sbjct 2227 GCCCAACACTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 2168
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
||||| | |||||||||||||| |||||||||||| || |||||
Sbjct 2167 GGCCCTGGACATCTAAGGGCATAACAGACCTGTTACTG-CTCAA 2125
>seq5378
Length=22061
Score = 104 bits (114), Expect = 4e-20
Identities = 146/200 (73%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||| |||||||||||| ||| ||| ||||| |||||| || ||||| ||||| |||
Sbjct 14766 GTACAAACGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAA-TTC 14823
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119
|||||| | || |||||||| | ||||| ||||||| | || | || ||
Sbjct 14824 CTCGTTCACAGGGAATAATTGCAAGCCCCGATCCCAATCACGACGGTGATGAAACAGTTT 14883
Query 120 ACCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
||| ||| || ||||| | | ||||||| || | ||| |||||||| ||||
Sbjct 14884 GCCCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 14943
Query 179 GGCCCAGAACATCTAAGGGC 198
|| || | ||||||||||||
Sbjct 14944 GGTCCCGGACATCTAAGGGC 14963
>seq781
Length=69496
Score = 104 bits (114), Expect = 4e-20
Identities = 167/234 (71%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||| |||||| ||||||| | ||| | | || |||||| || ||||| | ||||||
Sbjct 62867 GTATAAAGGGTAGGGACGGAATCAGATCAATGTTTATGACTTGCACTTACCACGAATTTT 62926
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119
||||| | | || |||||||| | ||||| |||||| || || | | ||
Sbjct 62927 -TCGTTCATGGGGAATAATTGCAAGTCCCGATCCCAGTCACGACTGTGATGAAACAATTT 62985
Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
||| ||| |||| | |||| ||||||||||| | ||| |||||||| ||||
Sbjct 62986 GCCCAACCCTTTCGGGCCAGGTTCCCAGACTCGTTGACACCGTCATTGTAGCGCACGTGT 63045
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGG 232
||||| | |||| ||| ||||| |||||| |||||||| ||||| || |||||
Sbjct 63046 GGCCCTGGACATATAATGGCATGACAGACATGTTATTG-CTCAA--TTTCGTGG 63096
>seq2456
Length=40044
Score = 93.3 bits (102), Expect = 6e-17
Identities = 155/219 (71%), Gaps = 9/219 (4%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||| ||||||||||||| || ||| ||| ||||| |||| | || |||| || | || |
Sbjct 21865 GTAAAAAGGGCAGGGACATAATCAGCGCAAGCTT-ATGAATTGCATTTACCAGTAGTT-C 21922
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||| || | | | |||| ||| | | | | | ||||||| || ||
Sbjct 21923 CTCATTCACGGGGATTAATTACAAACCCCAGTTACGAACTTGATGAAAC-----AGTTTG 21977
Query 121 CCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||| ||| ||||||| |||| |||||||||| | ||| |||||||| |||| |
Sbjct 21978 CCCAACCCTTTCGGCCA-GGTGTCCAGACTCGTTGGCACCGTCATTGTAGCGCACGTGTG 22036
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218
||| |||||||||||||||||||||| |||||||||
Sbjct 22037 TCCCCAGACATCTAAGGGCATCACAGACCCGTTATTGCC 22075
>seq1733
Length=48839
Score = 89.7 bits (98), Expect = 8e-16
Identities = 140/195 (72%), Gaps = 4/195 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||| || ||| ||| ||||| |||||| || || || ||||| |||
Sbjct 28096 GTACAAAGGGCAGGGATATAATCAGCGCAAGCTT-ATGACTTGCACTCACCAGGAA-TTC 28039
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119
|||||| | | || |||||||| | ||||| |||||| | || | || ||
Sbjct 28038 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 27979
Query 120 ACCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
||| ||| || ||||| | | ||||||| || | ||| |||||||| ||||
Sbjct 27978 GCCCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 27919
Query 179 GGCCCAGAACATCTA 193
||||| | |||||||
Sbjct 27918 GGCCCCGGACATCTA 27904
>seq9275
Length=11409
Score = 77.0 bits (84), Expect = 5e-12
Identities = 69/84 (82%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||| ||| ||| ||| ||||| |||||| || ||||| ||||| |||
Sbjct 2410 GTACAAAGGGCAGGGATGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAA-TTC 2467
Query 61 CTCGTTGAAGACCAACAATTGCAA 84
|||||| | | || ||||||||
Sbjct 2468 CTCGTTCACGGGAAATAATTGCAA 2491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751829858825
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