Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq10665 147 3e-33 seq2921 147 3e-33 seq16921 143 4e-32 seq711 129 9e-28 seq1136 123 4e-26 seq9662 116 6e-24 seq5378 104 4e-20 seq781 104 4e-20 seq2456 93.3 6e-17 seq1733 89.7 8e-16 seq9275 77.0 5e-12 >seq10665 Length=8850 Score = 147 bits (162), Expect = 3e-33 Identities = 171/224 (76%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 7794 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 7851 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||||||| | ||||| |||||| | | || || || Sbjct 7852 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 7911 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| | |||| ||||||| || | ||| |||||||| |||| Sbjct 7912 GCCCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 7971 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | |||||||||||||||||||||||||||||| ||||| Sbjct 7972 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 8014 >seq2921 Length=35972 Score = 147 bits (162), Expect = 3e-33 Identities = 171/224 (76%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 20775 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 20718 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||||||| | ||||| |||||| | | || || || Sbjct 20717 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 20658 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| | |||| ||||||| || | ||| |||||||| |||| Sbjct 20657 GCCCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 20598 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | |||||||||||||||||||||||||||||| ||||| Sbjct 20597 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 20555 Score = 147 bits (162), Expect = 3e-33 Identities = 171/224 (76%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 21819 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 21762 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||||||| | ||||| |||||| | | || || || Sbjct 21761 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 21702 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| | |||| ||||||| || | ||| |||||||| |||| Sbjct 21701 GCCCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 21642 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | |||||||||||||||||||||||||||||| ||||| Sbjct 21641 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 21599 >seq16921 Length=2467 Score = 143 bits (158), Expect = 4e-32 Identities = 170/224 (76%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 734 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 791 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||||||| | ||||| |||||| | | || || || Sbjct 792 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 851 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 | | ||| |||| | |||| ||||||| || ||||| |||||||| |||| Sbjct 852 GCGCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCATCATTGTAGCGCACGTGT 911 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||| | | |||||||||||||||||||||||||||||| ||||| Sbjct 912 GGCTCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 954 >seq711 Length=71778 Score = 129 bits (142), Expect = 9e-28 Identities = 166/220 (75%), Gaps = 7/220 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||| ||| Sbjct 6034 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAA-TTC 5977 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCT-ATCCCCATCACGA-TGAAATTTCAAAGAT 118 |||||| | | | ||| |||| | || ||||| |||||| | || | || | Sbjct 5976 CTCGTTCACGGGGATTAATCGCAA-GCCCTGATCCCAGTCACGACGGTGATAAAACAGTT 5918 Query 119 TACCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 | ||| | ||| || ||||| | | ||||||| || | ||| |||||||| |||| Sbjct 5917 TGCCCAGCCCTTTCAGGCCAGGTTCCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTG 5858 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 | ||| | ||||||||||||| ||||||||||||||||| Sbjct 5857 TGACCCCGGACATCTAAGGGCA-CACAGACCTGTTATTGC 5819 >seq1136 Length=60186 Score = 123 bits (136), Expect = 4e-26 Identities = 164/223 (74%), Gaps = 15/223 (7%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||||||||| | | Sbjct 36194 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACTAGGAA-TCC 36137 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | | || |||||||| || ||| || || | || || Sbjct 36136 CTCGTTCACGGGGAATAATTGCAA---------GTCACGACGGTG--ATGATACAGTTTG 36088 Query 121 CCCGGACCTGTCG-GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| ||| |||| | | ||||||| || | ||| |||||||| | || | Sbjct 36087 CCCAACCCTTTCGAGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACTTGTG 36028 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 36027 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 35986 >seq9662 Length=10629 Score = 116 bits (128), Expect = 6e-24 Identities = 164/224 (73%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| | |||||||| ||| | | ||||| |||||| || ||||| ||||||| | Sbjct 2345 GTACAAAGGACTGGGACGTAATCAGCTCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 2288 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||| ||| | ||||| |||||| | | || || || Sbjct 2287 CTCGTTCACGGGGAATAATTACAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 2228 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| || |||| | |||| ||||||| || | ||| |||||||| |||| Sbjct 2227 GCCCAACACTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 2168 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | |||||||||||||| |||||||||||| || ||||| Sbjct 2167 GGCCCTGGACATCTAAGGGCATAACAGACCTGTTACTG-CTCAA 2125 >seq5378 Length=22061 Score = 104 bits (114), Expect = 4e-20 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| ||| ||| ||||| |||||| || ||||| ||||| ||| Sbjct 14766 GTACAAACGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAA-TTC 14823 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 |||||| | || |||||||| | ||||| ||||||| | || | || || Sbjct 14824 CTCGTTCACAGGGAATAATTGCAAGCCCCGATCCCAATCACGACGGTGATGAAACAGTTT 14883 Query 120 ACCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| || ||||| | | ||||||| || | ||| |||||||| |||| Sbjct 14884 GCCCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 14943 Query 179 GGCCCAGAACATCTAAGGGC 198 || || | |||||||||||| Sbjct 14944 GGTCCCGGACATCTAAGGGC 14963 >seq781 Length=69496 Score = 104 bits (114), Expect = 4e-20 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||||| ||||||| | ||| | | || |||||| || ||||| | |||||| Sbjct 62867 GTATAAAGGGTAGGGACGGAATCAGATCAATGTTTATGACTTGCACTTACCACGAATTTT 62926 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 ||||| | | || |||||||| | ||||| |||||| || || | | || Sbjct 62927 -TCGTTCATGGGGAATAATTGCAAGTCCCGATCCCAGTCACGACTGTGATGAAACAATTT 62985 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| | |||| ||||||||||| | ||| |||||||| |||| Sbjct 62986 GCCCAACCCTTTCGGGCCAGGTTCCCAGACTCGTTGACACCGTCATTGTAGCGCACGTGT 63045 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGG 232 ||||| | |||| ||| ||||| |||||| |||||||| ||||| || ||||| Sbjct 63046 GGCCCTGGACATATAATGGCATGACAGACATGTTATTG-CTCAA--TTTCGTGG 63096 >seq2456 Length=40044 Score = 93.3 bits (102), Expect = 6e-17 Identities = 155/219 (71%), Gaps = 9/219 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||||||||||||| || ||| ||| ||||| |||| | || |||| || | || | Sbjct 21865 GTAAAAAGGGCAGGGACATAATCAGCGCAAGCTT-ATGAATTGCATTTACCAGTAGTT-C 21922 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||| || | | | |||| ||| | | | | | ||||||| || || Sbjct 21923 CTCATTCACGGGGATTAATTACAAACCCCAGTTACGAACTTGATGAAAC-----AGTTTG 21977 Query 121 CCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| ||||||| |||| |||||||||| | ||| |||||||| |||| | Sbjct 21978 CCCAACCCTTTCGGCCA-GGTGTCCAGACTCGTTGGCACCGTCATTGTAGCGCACGTGTG 22036 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 ||| |||||||||||||||||||||| ||||||||| Sbjct 22037 TCCCCAGACATCTAAGGGCATCACAGACCCGTTATTGCC 22075 >seq1733 Length=48839 Score = 89.7 bits (98), Expect = 8e-16 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||| || ||| ||| ||||| |||||| || || || ||||| ||| Sbjct 28096 GTACAAAGGGCAGGGATATAATCAGCGCAAGCTT-ATGACTTGCACTCACCAGGAA-TTC 28039 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 |||||| | | || |||||||| | ||||| |||||| | || | || || Sbjct 28038 CTCGTTCACGGGGAATAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGAAACAGTTT 27979 Query 120 ACCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| || ||||| | | ||||||| || | ||| |||||||| |||| Sbjct 27978 GCCCAACCCTTTCGGGCCAGGTTTCCAGACTCGCTGGCACCGTCATTGTAGCGCACGTGT 27919 Query 179 GGCCCAGAACATCTA 193 ||||| | ||||||| Sbjct 27918 GGCCCCGGACATCTA 27904 >seq9275 Length=11409 Score = 77.0 bits (84), Expect = 5e-12 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||| ||| ||| ||| ||||| |||||| || ||||| ||||| ||| Sbjct 2410 GTACAAAGGGCAGGGATGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAA-TTC 2467 Query 61 CTCGTTGAAGACCAACAATTGCAA 84 |||||| | | || |||||||| Sbjct 2468 CTCGTTCACGGGAAATAATTGCAA 2491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751829858825