Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq10665 188 1e-45
seq1136 170 4e-40
seq128 129 1e-27
seq1165 105 1e-20
>seq10665
Length=8850
Score = 188 bits (208), Expect = 1e-45
Identities = 219/288 (76%), Gaps = 12/288 (4%)
Strand=Plus/Minus
Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC---CAGGACTTTTACTTTGAAAAAATT 90
|||| ||||| || | |||||| |||||| | | | ||||||||||| |||||
Sbjct 8798 TCCGGATGCCTTTAAACGGGTGTC---GGGAGCGGACGGCATCTTTACTTTGAACAAATT 8742
Query 91 AGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGAC 148
||||| ||||||||||||| ||| | ||| | | |||||||||||| ||||||||
Sbjct 8741 TGAGTGCTCAAAGCAGGCCTGTGCGCCTGAAAATTCTTGCATGGAATAATGAAATAGGAC 8682
Query 149 GTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGG 207
| |||||||||||||||||||| | ||| ||| |||||| |||| ||||| || ||||
Sbjct 8681 TT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGTTAAGAGGGACAGACGGG 8624
Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGC 267
|| | |||| ||| |||||||||||||| |||| |||| |||||| ||
Sbjct 8623 GGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTGGGATCGCCGCCAGACAAACTACAGC 8564
Query 268 GAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315
|||||| || ||||| ||||||||||| ||||| || ||||||| ||
Sbjct 8563 GAAAGCATTTGCCAAGAATGTTTTCATTGATCAG-GAGCGAAAGTCAG 8517
>seq1136
Length=60186
Score = 170 bits (188), Expect = 4e-40
Identities = 215/288 (75%), Gaps = 12/288 (4%)
Strand=Plus/Plus
Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC---CAGGACTTTTACTTTGAAAAAATT 90
|||| ||||| || | |||||| |||||| | | | ||||||||||| |||||
Sbjct 35216 TCCGGATGCCTTTAAACGGGTGTC---GGGAGCGGACGGCATCTTTACTTTGAACAAATT 35272
Query 91 AGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGAC 148
||||| ||||||||||||| ||| | ||| | | |||||||||||| ||||||||
Sbjct 35273 TGAGTGCTCAAAGCAGGCCTGTGCGCCTGAAAATTCTTGCATGGAATAATGAAATAGGAC 35332
Query 149 GTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGG 207
| |||||||||||||||||||| | ||| ||| |||||| |||| || || || ||||
Sbjct 35333 TT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGTTAAGAGTGACAGACGGG 35390
Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGC 267
| ||| ||| |||||||||||||| ||||| | |||| |||||| ||
Sbjct 35391 AACATTTGTACGGCGGTGTTAGAGGTGAAATTCTGGGATTGCCTACAGACAAACTACAGC 35450
Query 268 GAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315
|||||| || ||||| ||||||| ||| | ||| || ||||||| ||
Sbjct 35451 GAAAGCATTTGCCAAGAATGTTTTGATTGAGCAG-GAGCGAAAGTCAG 35497
>seq128
Length=118216
Score = 129 bits (142), Expect = 1e-27
Identities = 180/248 (73%), Gaps = 11/248 (4%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA--GCATG 131
||||||||||| ||||| ||||| |||| |||| |||||| | | | |||| |||||
Sbjct 46332 TTTACTTTGAATAAATTTGAGTGCCCAAAACAGGACTTTGCGCCTAAAAATTATTGCATG 46273
Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191
||||||| ||||||| | | |||||||||||||||||| || ||| |||||| |
Sbjct 46272 GAATAATGAGATAGGACTT-CAGTTCTATTTTGTTGGTTTTCAGATCCGAAGTAATGGCT 46214
Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAAT----TGTCAGAGGTGAAATTCTTGGATT 247
|| | ||| || | || || | | || ||| |||||||||||||| ||||
Sbjct 46213 AAGACGGACAGACAAGGA---CATTTTATAAGGTGGTGTTAGAGGTGAAATTCTAGGATC 46157
Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307
| |||| || ||| || ||| | || ||||| ||||||||||| ||||| || |
Sbjct 46156 GCTGCCAGACAAATTACAGCAAAACCATTTGCCAAGAATGTTTTCATTGATCAG-GAGCT 46098
Query 308 AAAGTTAG 315
||||| ||
Sbjct 46097 AAAGTCAG 46090
>seq1165
Length=59347
Score = 105 bits (116), Expect = 1e-20
Identities = 167/239 (70%), Gaps = 18/239 (8%)
Strand=Plus/Plus
Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGA 133
||||||||| ||||| ||||| | |||| ||| || ||| | ||| | | |||||||
Sbjct 23600 TACTTTGAACAAATTTGAGTGCTTAAAGTAGGTCTATGCACCTGAAAATTTCTGCATGGA 23659
Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193
||||| |||||||| | |||||||||||||||||||| ||| |
Sbjct 23660 GTAATAAAATAGGACTT-CGGTTCTATTTTGTTGGTTT--------------TTGAATTC 23704
Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253
| ||| || | |||| | |||| ||| |||||||||||||| | || |
Sbjct 23705 GAAGGACAGACCGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTGGAATCGACGCC 23764
Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|||| |||||| |||||||| || |||| ||||||| ||| ||||| || |||| ||
Sbjct 23765 AGACAAACTACAGCGAAAGCATTTGCCAATAATGTTTTAATTGATCAG-GAGCGAACGT 23822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914986255040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |