Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq10665 188 1e-45 seq1136 170 4e-40 seq128 129 1e-27 seq1165 105 1e-20 >seq10665 Length=8850 Score = 188 bits (208), Expect = 1e-45 Identities = 219/288 (76%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC---CAGGACTTTTACTTTGAAAAAATT 90 |||| ||||| || | |||||| |||||| | | | ||||||||||| ||||| Sbjct 8798 TCCGGATGCCTTTAAACGGGTGTC---GGGAGCGGACGGCATCTTTACTTTGAACAAATT 8742 Query 91 AGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGAC 148 ||||| ||||||||||||| ||| | ||| | | |||||||||||| |||||||| Sbjct 8741 TGAGTGCTCAAAGCAGGCCTGTGCGCCTGAAAATTCTTGCATGGAATAATGAAATAGGAC 8682 Query 149 GTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGG 207 | |||||||||||||||||||| | ||| ||| |||||| |||| ||||| || |||| Sbjct 8681 TT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGTTAAGAGGGACAGACGGG 8624 Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGC 267 || | |||| ||| |||||||||||||| |||| |||| |||||| || Sbjct 8623 GGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTGGGATCGCCGCCAGACAAACTACAGC 8564 Query 268 GAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 |||||| || ||||| ||||||||||| ||||| || ||||||| || Sbjct 8563 GAAAGCATTTGCCAAGAATGTTTTCATTGATCAG-GAGCGAAAGTCAG 8517 >seq1136 Length=60186 Score = 170 bits (188), Expect = 4e-40 Identities = 215/288 (75%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 34 TCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC---CAGGACTTTTACTTTGAAAAAATT 90 |||| ||||| || | |||||| |||||| | | | ||||||||||| ||||| Sbjct 35216 TCCGGATGCCTTTAAACGGGTGTC---GGGAGCGGACGGCATCTTTACTTTGAACAAATT 35272 Query 91 AGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGAC 148 ||||| ||||||||||||| ||| | ||| | | |||||||||||| |||||||| Sbjct 35273 TGAGTGCTCAAAGCAGGCCTGTGCGCCTGAAAATTCTTGCATGGAATAATGAAATAGGAC 35332 Query 149 GTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGG 207 | |||||||||||||||||||| | ||| ||| |||||| |||| || || || |||| Sbjct 35333 TT-CGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGTTAAGAGTGACAGACGGG 35390 Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGC 267 | ||| ||| |||||||||||||| ||||| | |||| |||||| || Sbjct 35391 AACATTTGTACGGCGGTGTTAGAGGTGAAATTCTGGGATTGCCTACAGACAAACTACAGC 35450 Query 268 GAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 |||||| || ||||| ||||||| ||| | ||| || ||||||| || Sbjct 35451 GAAAGCATTTGCCAAGAATGTTTTGATTGAGCAG-GAGCGAAAGTCAG 35497 >seq128 Length=118216 Score = 129 bits (142), Expect = 1e-27 Identities = 180/248 (73%), Gaps = 11/248 (4%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA--GCATG 131 ||||||||||| ||||| ||||| |||| |||| |||||| | | | |||| ||||| Sbjct 46332 TTTACTTTGAATAAATTTGAGTGCCCAAAACAGGACTTTGCGCCTAAAAATTATTGCATG 46273 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 ||||||| ||||||| | | |||||||||||||||||| || ||| |||||| | Sbjct 46272 GAATAATGAGATAGGACTT-CAGTTCTATTTTGTTGGTTTTCAGATCCGAAGTAATGGCT 46214 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAAT----TGTCAGAGGTGAAATTCTTGGATT 247 || | ||| || | || || | | || ||| |||||||||||||| |||| Sbjct 46213 AAGACGGACAGACAAGGA---CATTTTATAAGGTGGTGTTAGAGGTGAAATTCTAGGATC 46157 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | |||| || ||| || ||| | || ||||| ||||||||||| ||||| || | Sbjct 46156 GCTGCCAGACAAATTACAGCAAAACCATTTGCCAAGAATGTTTTCATTGATCAG-GAGCT 46098 Query 308 AAAGTTAG 315 ||||| || Sbjct 46097 AAAGTCAG 46090 >seq1165 Length=59347 Score = 105 bits (116), Expect = 1e-20 Identities = 167/239 (70%), Gaps = 18/239 (8%) Strand=Plus/Plus Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGA 133 ||||||||| ||||| ||||| | |||| ||| || ||| | ||| | | ||||||| Sbjct 23600 TACTTTGAACAAATTTGAGTGCTTAAAGTAGGTCTATGCACCTGAAAATTTCTGCATGGA 23659 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 ||||| |||||||| | |||||||||||||||||||| ||| | Sbjct 23660 GTAATAAAATAGGACTT-CGGTTCTATTTTGTTGGTTT--------------TTGAATTC 23704 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 | ||| || | |||| | |||| ||| |||||||||||||| | || | Sbjct 23705 GAAGGACAGACCGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTGGAATCGACGCC 23764 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||| |||||| |||||||| || |||| ||||||| ||| ||||| || |||| || Sbjct 23765 AGACAAACTACAGCGAAAGCATTTGCCAATAATGTTTTAATTGATCAG-GAGCGAACGT 23822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914986255040