Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq14024 149 3e-33 seq5473 145 3e-32 seq14402 140 1e-30 seq1778 136 2e-29 seq16395 132 2e-28 seq852 122 4e-25 seq792 113 2e-22 seq1370 105 3e-20 seq3278 102 3e-19 seq623 89.7 2e-15 >seq14024 Length=4668 Score = 149 bits (164), Expect = 3e-33 Identities = 114/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || |||| |||||||||||||||||||||||| || ||| ||||| Sbjct 110 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAAG 169 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||| || Sbjct 170 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACG 229 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 230 TGAGTATAGGGGCGA 244 >seq5473 Length=21698 Score = 145 bits (160), Expect = 3e-32 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || |||| ||||||||||||||||||||| || || ||| ||||| Sbjct 9306 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTAGGCTTGTGAAGGTTGAAG 9365 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||| || Sbjct 9366 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACG 9425 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 9426 TGAGTATAGGGGCGA 9440 >seq14402 Length=4341 Score = 140 bits (154), Expect = 1e-30 Identities = 112/135 (83%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || |||| |||||||||||||||||||||||| || ||| ||||| Sbjct 723 GAGCAAGAGCGTACAGGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAAG 664 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||| ||||||||||| || |||| ||||| |||||||||||||||| || Sbjct 663 CCAGAGGAAATTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACG 604 Query 669 TGGGTATAGGGGCGA 683 || ||||| |||||| Sbjct 603 TGAGTATATGGGCGA 589 >seq1778 Length=48153 Score = 136 bits (150), Expect = 2e-29 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||| | || |||| |||||||||||||||||||||||| || ||| ||||| Sbjct 40283 GAGCAAGACCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAAG 40224 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 | |||||||||||||||||||| || |||| ||||| ||| |||||||||||| || Sbjct 40223 CTAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTACAAATCGATCGTATAACG 40164 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 40163 TGAGTATAGGGGCGA 40149 >seq16395 Length=2795 Score = 132 bits (146), Expect = 2e-28 Identities = 111/135 (82%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || |||| |||||||||||||||||| ||||| || ||| ||||| Sbjct 1947 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAA-TATGCTTGTGAAGGTTGAAG 1889 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| | |||| ||||| | |||||||||||||| || Sbjct 1888 CCAGAGGAAACTCTGGTGGAGGACCATAGCGATTCTGACATGCAAATCGATCGTACAACG 1829 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 1828 TGAGTATAGGGGCGA 1814 >seq852 Length=67309 Score = 122 bits (134), Expect = 4e-25 Identities = 90/105 (86%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638 ||||||||||||||| || ||| ||||||||||||||||||||||||||| || ||| Sbjct 26459 GATGGTGAACTATGCTTGTGAAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGTAGC 26518 Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||| |||||||||||||||| || || |||||||||||| Sbjct 26519 GATTCTGACGTGCAAATCGATCGTATAACGTGAGTATAGGGGCGA 26563 >seq792 Length=69236 Score = 113 bits (124), Expect = 2e-22 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| | |||| |||||||||||| ||||||| ||| || | | ||||| Sbjct 46884 GAGCAAGAGCGCACACGTTGAGACCCGAAAGATTGTGAACTGTGCTTGTGAATGTTGAAG 46943 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||| ||||||||||||| |||| || || | ||||| ||| |||||||||||| || Sbjct 46944 CCATAGGAAACTCTGGTTGAGGACCGTAGGGATTCTGACGTACAAATCGATCGTATAACG 47003 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 47004 TGAGTATAGGGGCGA 47018 >seq1370 Length=54692 Score = 105 bits (116), Expect = 3e-20 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 ||| |||||||| |||| |||||||||| || ||| |||||||||||||||||||||| Sbjct 28265 TTGAGACCCGAACGATGATGAACTATGCTTGTGAAGGTTGAAGCCAGAGGAAACTCTGGT 28206 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| || || | ||||| ||||| ||||||| || || || ||||| ||| || Sbjct 28205 TGAGGACCGTAGTGATTCTGACGTGCGAATCGATTGTATAACGTGAGTATAAGGGTGA 28148 >seq3278 Length=33280 Score = 102 bits (112), Expect = 3e-19 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || |||| |||||||||||||||||||||||| || ||| ||||| Sbjct 33190 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAAG 33249 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 |||||||||||||||||||||| || |||| Sbjct 33250 CCAGAGGAAACTCTGGTGGAGGACCGTAGCG 33280 >seq623 Length=75335 Score = 89.7 bits (98), Expect = 2e-15 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 ||| | ||||||| || || ||| ||||||||||||||||||| |||| || | | Sbjct 44878 GGAGTGGAGTAAGGGCGTATACATTGAGACCCGAAAGATGGTGAACCATGCTTGCAAAAA 44819 Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 |||||||||||| |||||| ||||||| || || | |||| || |||| | ||||| Sbjct 44818 CTGAAGCCAGAGGTAACTCTAGTGGAGGGCCGTAGTGATTCTCACGCGCAAGTAAATCGT 44759 Query 663 CAAATTTGGGTATA 676 || || ||||| Sbjct 44758 ATAACGTGAGTATA 44745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079499035250