Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq14024 149 3e-33
seq5473 145 3e-32
seq14402 140 1e-30
seq1778 136 2e-29
seq16395 132 2e-28
seq852 122 4e-25
seq792 113 2e-22
seq1370 105 3e-20
seq3278 102 3e-19
seq623 89.7 2e-15
>seq14024
Length=4668
Score = 149 bits (164), Expect = 3e-33
Identities = 114/135 (84%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| |||||| || |||| |||||||||||||||||||||||| || ||| |||||
Sbjct 110 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAAG 169
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||| ||||| |||||||||||||||| ||
Sbjct 170 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACG 229
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 230 TGAGTATAGGGGCGA 244
>seq5473
Length=21698
Score = 145 bits (160), Expect = 3e-32
Identities = 113/135 (84%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| |||||| || |||| ||||||||||||||||||||| || || ||| |||||
Sbjct 9306 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTAGGCTTGTGAAGGTTGAAG 9365
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||| ||||| |||||||||||||||| ||
Sbjct 9366 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACG 9425
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 9426 TGAGTATAGGGGCGA 9440
>seq14402
Length=4341
Score = 140 bits (154), Expect = 1e-30
Identities = 112/135 (83%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| |||||| || |||| |||||||||||||||||||||||| || ||| |||||
Sbjct 723 GAGCAAGAGCGTACAGGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAAG 664
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||| ||||||||||| || |||| ||||| |||||||||||||||| ||
Sbjct 663 CCAGAGGAAATTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTATAACG 604
Query 669 TGGGTATAGGGGCGA 683
|| ||||| ||||||
Sbjct 603 TGAGTATATGGGCGA 589
>seq1778
Length=48153
Score = 136 bits (150), Expect = 2e-29
Identities = 111/135 (82%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| |||| | || |||| |||||||||||||||||||||||| || ||| |||||
Sbjct 40283 GAGCAAGACCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAAG 40224
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
| |||||||||||||||||||| || |||| ||||| ||| |||||||||||| ||
Sbjct 40223 CTAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTACAAATCGATCGTATAACG 40164
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 40163 TGAGTATAGGGGCGA 40149
>seq16395
Length=2795
Score = 132 bits (146), Expect = 2e-28
Identities = 111/135 (82%), Gaps = 1/135 (1%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| |||||| || |||| |||||||||||||||||| ||||| || ||| |||||
Sbjct 1947 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAA-TATGCTTGTGAAGGTTGAAG 1889
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| | |||| ||||| | |||||||||||||| ||
Sbjct 1888 CCAGAGGAAACTCTGGTGGAGGACCATAGCGATTCTGACATGCAAATCGATCGTACAACG 1829
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 1828 TGAGTATAGGGGCGA 1814
>seq852
Length=67309
Score = 122 bits (134), Expect = 4e-25
Identities = 90/105 (86%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638
||||||||||||||| || ||| ||||||||||||||||||||||||||| || |||
Sbjct 26459 GATGGTGAACTATGCTTGTGAAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGTAGC 26518
Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| ||||| |||||||||||||||| || || ||||||||||||
Sbjct 26519 GATTCTGACGTGCAAATCGATCGTATAACGTGAGTATAGGGGCGA 26563
>seq792
Length=69236
Score = 113 bits (124), Expect = 2e-22
Identities = 106/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| |||||| | |||| |||||||||||| ||||||| ||| || | | |||||
Sbjct 46884 GAGCAAGAGCGCACACGTTGAGACCCGAAAGATTGTGAACTGTGCTTGTGAATGTTGAAG 46943
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
||| ||||||||||||| |||| || || | ||||| ||| |||||||||||| ||
Sbjct 46944 CCATAGGAAACTCTGGTTGAGGACCGTAGGGATTCTGACGTACAAATCGATCGTATAACG 47003
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 47004 TGAGTATAGGGGCGA 47018
>seq1370
Length=54692
Score = 105 bits (116), Expect = 3e-20
Identities = 94/118 (80%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625
||| |||||||| |||| |||||||||| || ||| ||||||||||||||||||||||
Sbjct 28265 TTGAGACCCGAACGATGATGAACTATGCTTGTGAAGGTTGAAGCCAGAGGAAACTCTGGT 28206
Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||| || || | ||||| ||||| ||||||| || || || ||||| ||| ||
Sbjct 28205 TGAGGACCGTAGTGATTCTGACGTGCGAATCGATTGTATAACGTGAGTATAAGGGTGA 28148
>seq3278
Length=33280
Score = 102 bits (112), Expect = 3e-19
Identities = 77/91 (85%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| |||||| || |||| |||||||||||||||||||||||| || ||| |||||
Sbjct 33190 GAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGAAGGTTGAAG 33249
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639
|||||||||||||||||||||| || ||||
Sbjct 33250 CCAGAGGAAACTCTGGTGGAGGACCGTAGCG 33280
>seq623
Length=75335
Score = 89.7 bits (98), Expect = 2e-15
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602
||| | ||||||| || || ||| ||||||||||||||||||| |||| || | |
Sbjct 44878 GGAGTGGAGTAAGGGCGTATACATTGAGACCCGAAAGATGGTGAACCATGCTTGCAAAAA 44819
Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662
|||||||||||| |||||| ||||||| || || | |||| || |||| | |||||
Sbjct 44818 CTGAAGCCAGAGGTAACTCTAGTGGAGGGCCGTAGTGATTCTCACGCGCAAGTAAATCGT 44759
Query 663 CAAATTTGGGTATA 676
|| || |||||
Sbjct 44758 ATAACGTGAGTATA 44745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079499035250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |