Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq10665 188 1e-45
seq2921 188 1e-45
seq1475 176 7e-42
seq1136 168 1e-39
seq6421 163 5e-38
seq16921 154 2e-35
seq9662 136 6e-30
seq1165 123 4e-26
seq2839 118 2e-24
seq711 118 2e-24
seq63 116 6e-24
seq6931 91.5 2e-16
seq6581 89.7 8e-16
seq2456 86.0 1e-14
seq235 78.8 1e-12
seq79 78.8 1e-12
>seq10665
Length=8850
Score = 188 bits (208), Expect = 1e-45
Identities = 112/117 (96%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 8150 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 8209
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 8210 ACTAAGAACGGCCATGCACCACCATCCACCGAATCAAGAAAGAGCTATCAATCTGTC 8266
Score = 98.7 bits (108), Expect = 2e-18
Identities = 68/76 (89%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| |||||| |||||||| |||| ||||| | ||||||||||||||||||||
Sbjct 7940 ACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACAGA 7999
Query 62 CCTGTTATTGCCTCAA 77
|||||||||| |||||
Sbjct 8000 CCTGTTATTG-CTCAA 8014
>seq2921
Length=35972
Score = 188 bits (208), Expect = 1e-45
Identities = 112/117 (96%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 21463 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 21404
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 21403 ACTAAGAACGGCCATGCACCACCATCCACCGAATCAAGAAAGAGCTATCAATCTGTC 21347
Score = 127 bits (140), Expect = 3e-27
Identities = 73/75 (97%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 20419 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 20360
Query 202 ACTAAGAACGGCCAT 216
|||||||||||||||
Sbjct 20359 ACTAAGAACGGCCAT 20345
Score = 98.7 bits (108), Expect = 2e-18
Identities = 68/76 (89%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| |||||| |||||||| |||| ||||| | ||||||||||||||||||||
Sbjct 20629 ACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACAGA 20570
Query 62 CCTGTTATTGCCTCAA 77
|||||||||| |||||
Sbjct 20569 CCTGTTATTG-CTCAA 20555
Score = 98.7 bits (108), Expect = 2e-18
Identities = 68/76 (89%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| |||||| |||||||| |||| ||||| | ||||||||||||||||||||
Sbjct 21673 ACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACAGA 21614
Query 62 CCTGTTATTGCCTCAA 77
|||||||||| |||||
Sbjct 21613 CCTGTTATTG-CTCAA 21599
>seq1475
Length=52799
Score = 176 bits (194), Expect = 7e-42
Identities = 109/117 (93%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 45504 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAGTTGCTCCACCA 45563
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||| |||| ||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 45564 ACTAAAAACGACCATGCACCACCATCCATCGAATCAAGAAAGAGCTATCAATCTGTC 45620
>seq1136
Length=60186
Score = 168 bits (186), Expect = 1e-39
Identities = 105/113 (93%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||
Sbjct 35857 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAACTCGCTCCACCA 35798
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254
||||| ||||||||||||||||||| || |||||||||||||||| ||||||
Sbjct 35797 ACTAAAAACGGCCATGCACCACCACTCACCGAATCAAGAAAGAGCTGTCAATC 35745
Score = 93.3 bits (102), Expect = 7e-17
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| |||||| |||||||| | || ||||| | ||||||||||||||||||||
Sbjct 36060 ACTCGCTGGCACCGTCATTGTAGCGCACTTGTGGCCCCGGACATCTAAGGGCATCACAGA 36001
Query 62 CCTGTTATTGCCTCAA 77
|||||||||| |||||
Sbjct 36000 CCTGTTATTG-CTCAA 35986
>seq6421
Length=18482
Score = 163 bits (180), Expect = 5e-38
Identities = 208/282 (74%), Gaps = 26/282 (9%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
|||| |||| |||||| |||||||| || ||||| | || |||||| ||||||||||
Sbjct 2444 ACTCATTGGCACCGTCATTGTAGCGCATATGTGGCCCCGGACGTCTAAGAGCATCACAGA 2385
Query 62 CCTGTTATTGCCTCAAA--CTTCC------ATTG-GCTG-GAAGCCAATAGTCCCTCTA- 110
||||||||||| || | ||| | |||| || | ||| || || || | |
Sbjct 2384 CCTGTTATTGC-TCGATTTCTTGCGACTTAATTGTGCGGCGAACACACTACCCCATAAAG 2326
Query 111 -------AGAAGCCAGCCACCAACC----ATAGTCGATGGGGCTA---TTTAGCAGGTTA 156
||||||| | | || | | || || | ||| |||| |||||||
Sbjct 2325 AAGCAATAGAAGCCGCGCTCTAAGCGAGGACAGAGGACCAGTCTACTATTTATCAGGTTA 2266
Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216
| |||||||||||||| |||||||||| |||||||| |||||| ||||| ||||||||||
Sbjct 2265 AAGTCTCGTTCGTTATAGGAATTAACCCGACAAATCGCTCCACAAACTAGGAACGGCCAT 2206
Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||| | |||||||||| ||||||||||||||||
Sbjct 2205 GCACCACCACCTACCGAATCAAGAATGAGCTATCAATCTGTC 2164
>seq16921
Length=2467
Score = 154 bits (170), Expect = 2e-35
Identities = 91/95 (96%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1090 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 1149
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATC 236
|||||||||||||||||||||||| |||| |||||
Sbjct 1150 ACTAAGAACGGCCATGCACCACCATCCATCGAATC 1184
Score = 89.7 bits (98), Expect = 8e-16
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| || ||| |||||||| |||| ||| | | ||||||||||||||||||||
Sbjct 880 ACTCGCTGGCACCATCATTGTAGCGCACGTGTGGCTCCGGACATCTAAGGGCATCACAGA 939
Query 62 CCTGTTATTGCCTCAA 77
|||||||||| |||||
Sbjct 940 CCTGTTATTG-CTCAA 954
>seq9662
Length=10629
Score = 136 bits (150), Expect = 6e-30
Identities = 78/80 (98%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2013 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 1954
Query 202 ACTAAGAACGGCCATGCACC 221
||||||||||||||||||||
Sbjct 1953 ACTAAGAACGGCCATGCACC 1934
Score = 89.7 bits (98), Expect = 8e-16
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| |||||| |||||||| |||| ||||| | |||||||||||||| |||||
Sbjct 2199 ACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCTGGACATCTAAGGGCATAACAGA 2140
Query 62 CCTGTTATTGCCTCAA 77
||||||| || |||||
Sbjct 2139 CCTGTTACTG-CTCAA 2125
>seq1165
Length=59347
Score = 123 bits (136), Expect = 4e-26
Identities = 82/91 (90%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 168 GTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 227
||||||||||||||||||||||||| |||||| ||||||||| |||||||||| |||| |
Sbjct 24165 GTTATCGGAATTAACCAGACAAATCGCTCCACTAACTAAGAATGGCCATGCACTACCATC 24106
Query 228 CATAGAATCAAGAAAGAGCTATCAATCTGTC 258
| |||||| ||||||||||||||||||||
Sbjct 24105 TACTGAATCAGGAAAGAGCTATCAATCTGTC 24075
>seq2839
Length=36605
Score = 118 bits (130), Expect = 2e-24
Identities = 71/75 (95%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 85 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 26
Query 202 ACTAAGAACGGCCAT 216
| ||||||||| |||
Sbjct 25 ATTAAGAACGGGCAT 11
>seq711
Length=71778
Score = 118 bits (130), Expect = 2e-24
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 5695 CTATTTAACAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 5636
Query 202 ACTAAGAACGGCC 214
|||||||||||||
Sbjct 5635 ACTAAGAACGGCC 5623
Score = 84.2 bits (92), Expect = 3e-14
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| |||||| |||||||| |||| | ||| | ||||||||||||| ||||||
Sbjct 5888 ACTCGCTGGCACCGTCATTGTAGCGCACGTGTGACCCCGGACATCTAAGGGCA-CACAGA 5830
Query 62 CCTGTTATTGC 72
|||||||||||
Sbjct 5829 CCTGTTATTGC 5819
>seq63
Length=136814
Score = 116 bits (128), Expect = 6e-24
Identities = 79/89 (89%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 170 TATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229
|| |||| ||||||||| |||| ||| ||||||||| |||||||||||||||| ||||||
Sbjct 112391 TAACGGAGTTAACCAGAAAAATTACTTCACCAACTATGAACGGCCATGCACCATCACCCA 112450
Query 230 TAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||||||||||||||
Sbjct 112451 CCAAATCAAGAAAGAGCTATCAATCTGTC 112479
>seq6931
Length=16924
Score = 91.5 bits (100), Expect = 2e-16
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202
|||| |||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct 16242 TATTAAGCAGGTTAATGTCTCGTTCGTTATCGGAATTAACCAGACAAATTACCTCACCAA 16301
Query 203 CTAAGAAC 210
|| ||||
Sbjct 16302 CTGTGAAC 16309
>seq6581
Length=18018
Score = 89.7 bits (98), Expect = 8e-16
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 144 ATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAAC 203
|||||||| ||| | ||| |||||||||||||||||||||||||||||| |||||||
Sbjct 8207 ATTTAGCATGTTTAAGTCATGTTCGTTATCGGAATTAACCAGACAAATCATCTCACCAAC 8148
Query 204 TAAGAACGGCCATG 217
|||||||| | |||
Sbjct 8147 TAAGAACGACAATG 8134
>seq2456
Length=40044
Score = 86.0 bits (94), Expect = 1e-14
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||| |||||| |||||||| |||| | ||| ||||||||||||||||||||
Sbjct 22004 ACTCGTTGGCACCGTCATTGTAGCGCACGTGTGTCCCCAGACATCTAAGGGCATCACAGA 22063
Query 62 CCTGTTATTGCC 73
|| |||||||||
Sbjct 22064 CCCGTTATTGCC 22075
Score = 82.4 bits (90), Expect = 1e-13
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 143 TATTTAGCAGGTTAAGGT-CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||| |||| ||| | || |||||||||||||| |||||||||| || |||||||
Sbjct 22214 TATTTATCAGGCTAAAATTCTTGTTCGTTATCGGAACTAACCAGACATGTCTCTCCACCG 22273
Query 202 ACTAAGAACGGCCATGC 218
||||| |||||||||||
Sbjct 22274 ACTAAAAACGGCCATGC 22290
>seq235
Length=100731
Score = 78.8 bits (86), Expect = 1e-12
Identities = 64/78 (82%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||||||||||| | || ||| ||| | |||| ||||||| ||||| ||||||||
Sbjct 46090 CTATTTAGCAGGTTAAAGCCTTGTTTGTTGTTAGAATCAACCAGATAAATCGCTCCACCA 46031
Query 202 ACTAAGAACGGCCATGCA 219
| ||| || |||||| ||
Sbjct 46030 AATAAAAAAGGCCATCCA 46013
>seq79
Length=130873
Score = 78.8 bits (86), Expect = 1e-12
Identities = 72/90 (80%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228
|||||||||| | | ||||| | || ||||||| |||||||| |||||||||||||
Sbjct 27026 TTATCGGAATCACCTGGACAATTTGCTGCACCAAC-AAGAACGGTTATGCACCACCACCG 26968
Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGTC 258
| ||| ||||||||||||||| || |||
Sbjct 26967 ACCAAATGAAGAAAGAGCTATCATTCCGTC 26938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796619722755
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