Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq10665 188 1e-45 seq2921 188 1e-45 seq1475 176 7e-42 seq1136 168 1e-39 seq6421 163 5e-38 seq16921 154 2e-35 seq9662 136 6e-30 seq1165 123 4e-26 seq2839 118 2e-24 seq711 118 2e-24 seq63 116 6e-24 seq6931 91.5 2e-16 seq6581 89.7 8e-16 seq2456 86.0 1e-14 seq235 78.8 1e-12 seq79 78.8 1e-12 >seq10665 Length=8850 Score = 188 bits (208), Expect = 1e-45 Identities = 112/117 (96%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 8150 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 8209 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 8210 ACTAAGAACGGCCATGCACCACCATCCACCGAATCAAGAAAGAGCTATCAATCTGTC 8266 Score = 98.7 bits (108), Expect = 2e-18 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| |||||||| |||| ||||| | |||||||||||||||||||| Sbjct 7940 ACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACAGA 7999 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 8000 CCTGTTATTG-CTCAA 8014 >seq2921 Length=35972 Score = 188 bits (208), Expect = 1e-45 Identities = 112/117 (96%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 21463 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 21404 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 21403 ACTAAGAACGGCCATGCACCACCATCCACCGAATCAAGAAAGAGCTATCAATCTGTC 21347 Score = 127 bits (140), Expect = 3e-27 Identities = 73/75 (97%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 20419 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 20360 Query 202 ACTAAGAACGGCCAT 216 ||||||||||||||| Sbjct 20359 ACTAAGAACGGCCAT 20345 Score = 98.7 bits (108), Expect = 2e-18 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| |||||||| |||| ||||| | |||||||||||||||||||| Sbjct 20629 ACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACAGA 20570 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 20569 CCTGTTATTG-CTCAA 20555 Score = 98.7 bits (108), Expect = 2e-18 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| |||||||| |||| ||||| | |||||||||||||||||||| Sbjct 21673 ACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACAGA 21614 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 21613 CCTGTTATTG-CTCAA 21599 >seq1475 Length=52799 Score = 176 bits (194), Expect = 7e-42 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| Sbjct 45504 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAGTTGCTCCACCA 45563 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| |||| ||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 45564 ACTAAAAACGACCATGCACCACCATCCATCGAATCAAGAAAGAGCTATCAATCTGTC 45620 >seq1136 Length=60186 Score = 168 bits (186), Expect = 1e-39 Identities = 105/113 (93%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| Sbjct 35857 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAACTCGCTCCACCA 35798 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||| ||||||||||||||||||| || |||||||||||||||| |||||| Sbjct 35797 ACTAAAAACGGCCATGCACCACCACTCACCGAATCAAGAAAGAGCTGTCAATC 35745 Score = 93.3 bits (102), Expect = 7e-17 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| |||||||| | || ||||| | |||||||||||||||||||| Sbjct 36060 ACTCGCTGGCACCGTCATTGTAGCGCACTTGTGGCCCCGGACATCTAAGGGCATCACAGA 36001 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 36000 CCTGTTATTG-CTCAA 35986 >seq6421 Length=18482 Score = 163 bits (180), Expect = 5e-38 Identities = 208/282 (74%), Gaps = 26/282 (9%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 |||| |||| |||||| |||||||| || ||||| | || |||||| |||||||||| Sbjct 2444 ACTCATTGGCACCGTCATTGTAGCGCATATGTGGCCCCGGACGTCTAAGAGCATCACAGA 2385 Query 62 CCTGTTATTGCCTCAAA--CTTCC------ATTG-GCTG-GAAGCCAATAGTCCCTCTA- 110 ||||||||||| || | ||| | |||| || | ||| || || || | | Sbjct 2384 CCTGTTATTGC-TCGATTTCTTGCGACTTAATTGTGCGGCGAACACACTACCCCATAAAG 2326 Query 111 -------AGAAGCCAGCCACCAACC----ATAGTCGATGGGGCTA---TTTAGCAGGTTA 156 ||||||| | | || | | || || | ||| |||| ||||||| Sbjct 2325 AAGCAATAGAAGCCGCGCTCTAAGCGAGGACAGAGGACCAGTCTACTATTTATCAGGTTA 2266 Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 | |||||||||||||| |||||||||| |||||||| |||||| ||||| |||||||||| Sbjct 2265 AAGTCTCGTTCGTTATAGGAATTAACCCGACAAATCGCTCCACAAACTAGGAACGGCCAT 2206 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| | |||||||||| |||||||||||||||| Sbjct 2205 GCACCACCACCTACCGAATCAAGAATGAGCTATCAATCTGTC 2164 >seq16921 Length=2467 Score = 154 bits (170), Expect = 2e-35 Identities = 91/95 (96%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 1090 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 1149 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||||||||||||||||||| |||| ||||| Sbjct 1150 ACTAAGAACGGCCATGCACCACCATCCATCGAATC 1184 Score = 89.7 bits (98), Expect = 8e-16 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| || ||| |||||||| |||| ||| | | |||||||||||||||||||| Sbjct 880 ACTCGCTGGCACCATCATTGTAGCGCACGTGTGGCTCCGGACATCTAAGGGCATCACAGA 939 Query 62 CCTGTTATTGCCTCAA 77 |||||||||| ||||| Sbjct 940 CCTGTTATTG-CTCAA 954 >seq9662 Length=10629 Score = 136 bits (150), Expect = 6e-30 Identities = 78/80 (98%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 2013 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 1954 Query 202 ACTAAGAACGGCCATGCACC 221 |||||||||||||||||||| Sbjct 1953 ACTAAGAACGGCCATGCACC 1934 Score = 89.7 bits (98), Expect = 8e-16 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| |||||||| |||| ||||| | |||||||||||||| ||||| Sbjct 2199 ACTCGCTGGCACCGTCATTGTAGCGCACGTGTGGCCCTGGACATCTAAGGGCATAACAGA 2140 Query 62 CCTGTTATTGCCTCAA 77 ||||||| || ||||| Sbjct 2139 CCTGTTACTG-CTCAA 2125 >seq1165 Length=59347 Score = 123 bits (136), Expect = 4e-26 Identities = 82/91 (90%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 168 GTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 227 ||||||||||||||||||||||||| |||||| ||||||||| |||||||||| |||| | Sbjct 24165 GTTATCGGAATTAACCAGACAAATCGCTCCACTAACTAAGAATGGCCATGCACTACCATC 24106 Query 228 CATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||| |||||||||||||||||||| Sbjct 24105 TACTGAATCAGGAAAGAGCTATCAATCTGTC 24075 >seq2839 Length=36605 Score = 118 bits (130), Expect = 2e-24 Identities = 71/75 (95%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 85 CTATTTAGCAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 26 Query 202 ACTAAGAACGGCCAT 216 | ||||||||| ||| Sbjct 25 ATTAAGAACGGGCAT 11 >seq711 Length=71778 Score = 118 bits (130), Expect = 2e-24 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 5695 CTATTTAACAGGTTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 5636 Query 202 ACTAAGAACGGCC 214 ||||||||||||| Sbjct 5635 ACTAAGAACGGCC 5623 Score = 84.2 bits (92), Expect = 3e-14 Identities = 62/71 (87%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| |||||||| |||| | ||| | ||||||||||||| |||||| Sbjct 5888 ACTCGCTGGCACCGTCATTGTAGCGCACGTGTGACCCCGGACATCTAAGGGCA-CACAGA 5830 Query 62 CCTGTTATTGC 72 ||||||||||| Sbjct 5829 CCTGTTATTGC 5819 >seq63 Length=136814 Score = 116 bits (128), Expect = 6e-24 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 170 TATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 || |||| ||||||||| |||| ||| ||||||||| |||||||||||||||| |||||| Sbjct 112391 TAACGGAGTTAACCAGAAAAATTACTTCACCAACTATGAACGGCCATGCACCATCACCCA 112450 Query 230 TAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||| Sbjct 112451 CCAAATCAAGAAAGAGCTATCAATCTGTC 112479 >seq6931 Length=16924 Score = 91.5 bits (100), Expect = 2e-16 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 |||| |||||||||| ||||||||||||||||||||||||||||||||| || |||||| Sbjct 16242 TATTAAGCAGGTTAATGTCTCGTTCGTTATCGGAATTAACCAGACAAATTACCTCACCAA 16301 Query 203 CTAAGAAC 210 || |||| Sbjct 16302 CTGTGAAC 16309 >seq6581 Length=18018 Score = 89.7 bits (98), Expect = 8e-16 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 144 ATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAAC 203 |||||||| ||| | ||| |||||||||||||||||||||||||||||| ||||||| Sbjct 8207 ATTTAGCATGTTTAAGTCATGTTCGTTATCGGAATTAACCAGACAAATCATCTCACCAAC 8148 Query 204 TAAGAACGGCCATG 217 |||||||| | ||| Sbjct 8147 TAAGAACGACAATG 8134 >seq2456 Length=40044 Score = 86.0 bits (94), Expect = 1e-14 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||| |||||| |||||||| |||| | ||| |||||||||||||||||||| Sbjct 22004 ACTCGTTGGCACCGTCATTGTAGCGCACGTGTGTCCCCAGACATCTAAGGGCATCACAGA 22063 Query 62 CCTGTTATTGCC 73 || ||||||||| Sbjct 22064 CCCGTTATTGCC 22075 Score = 82.4 bits (90), Expect = 1e-13 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGT-CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||| |||| ||| | || |||||||||||||| |||||||||| || ||||||| Sbjct 22214 TATTTATCAGGCTAAAATTCTTGTTCGTTATCGGAACTAACCAGACATGTCTCTCCACCG 22273 Query 202 ACTAAGAACGGCCATGC 218 ||||| ||||||||||| Sbjct 22274 ACTAAAAACGGCCATGC 22290 >seq235 Length=100731 Score = 78.8 bits (86), Expect = 1e-12 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||| | || ||| ||| | |||| ||||||| ||||| |||||||| Sbjct 46090 CTATTTAGCAGGTTAAAGCCTTGTTTGTTGTTAGAATCAACCAGATAAATCGCTCCACCA 46031 Query 202 ACTAAGAACGGCCATGCA 219 | ||| || |||||| || Sbjct 46030 AATAAAAAAGGCCATCCA 46013 >seq79 Length=130873 Score = 78.8 bits (86), Expect = 1e-12 Identities = 72/90 (80%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 |||||||||| | | ||||| | || ||||||| |||||||| ||||||||||||| Sbjct 27026 TTATCGGAATCACCTGGACAATTTGCTGCACCAAC-AAGAACGGTTATGCACCACCACCG 26968 Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | ||| ||||||||||||||| || ||| Sbjct 26967 ACCAAATGAAGAAAGAGCTATCATTCCGTC 26938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796619722755