Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq10467 248 1e-63 seq13507 233 3e-59 seq10746 233 3e-59 seq4 181 2e-43 seq4862 159 6e-37 seq1752 122 1e-25 seq151 122 1e-25 seq974 96.9 6e-18 seq7649 86.0 1e-14 >seq10467 Length=9193 Score = 248 bits (274), Expect = 1e-63 Identities = 172/195 (88%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 7336 TCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 7395 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| ||||||| |||| || |||| || |||||| Sbjct 7396 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTACTTCACAATCATAGAAACAGCCGA 7455 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||| |||||||| | |||||||||||||| |||||| ||||||||| | ||||| Sbjct 7456 CATCGAAGAATCAAAAACCGACGTCGCTATGAACACTTGGCCGCCACAAGCTATTTATCA 7515 Query 211 CTGTGGTAACTTTTC 225 ||||||| | |||| Sbjct 7516 CTGTGGTGCCCTTTC 7530 >seq13507 Length=5189 Score = 233 bits (258), Expect = 3e-59 Identities = 165/189 (87%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 37 GTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 96 |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct 3082 GTAGGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCACGTTCCTTATTAGTG 3023 Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 | ||| ||||||||| ||| ||||||| |||| ||||||| |||||| |||||||| Sbjct 3022 GATGAGCAATCCAACACTTGGTGAATTCTACTTCACAATGATAGAAAGAGCGGACATCGA 2963 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216 ||||||||||| | |||||||||||||| |||| ||||||||||| ||||||| |||||| Sbjct 2962 AGGATCAAAAACCGACGTCGCTATGAACACTTGCCTGCCACAAGCTAGTTATCACTGTGG 2903 Query 217 TAACTTTTC 225 | | |||| Sbjct 2902 TGCCCTTTC 2894 >seq10746 Length=8719 Score = 233 bits (258), Expect = 3e-59 Identities = 165/189 (87%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 37 GTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 96 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1845 GTAGGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 1786 Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 | ||||||||||||| ||| ||||||| |||| ||||||| |||||| ||||||| Sbjct 1785 GATGAACAATCCAACACTTGGTGAATTCTACTTCACAATGATAGAAAGAGCGAACATCGA 1726 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216 ||||||||||| | |||||||||||||| |||||| ||||||||| | ||||| |||||| Sbjct 1725 AGGATCAAAAACCGACGTCGCTATGAACACTTGGCCGCCACAAGCTATTTATCACTGTGG 1666 Query 217 TAACTTTTC 225 | | |||| Sbjct 1665 TGCCCTTTC 1657 >seq4 Length=281048 Score = 181 bits (200), Expect = 2e-43 Identities = 126/143 (88%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 50 AACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCA 109 |||||||||| | ||| |||||| | ||||| ||||| |||||||||||||||||||| Sbjct 135990 AACCTGTCTCGCGGCGGATTAAACCTAACTCACTTTCCCCATTAGTGGGTGAACAATCCA 135931 Query 110 ACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 |||||| | |||||| ||||| ||||||||||||||||||||| |||||||||||||| Sbjct 135930 ACGCTTGCTGAATTCCGCTTCACAATGATAGGAAGAGCCGACATCAAAGGATCAAAAAGC 135871 Query 170 AACGTCGCTATGAACGCTTGGCT 192 |||||||||||||||||||||| Sbjct 135870 GACGTCGCTATGAACGCTTGGCT 135848 >seq4862 Length=24419 Score = 159 bits (176), Expect = 6e-37 Identities = 115/133 (86%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| |||| |||||||||||||||||||| | |||||| || ||| |||||||||||| Sbjct 17284 TCATTAGTAAGGTAAAACTAACCTGTCTCACAATGGTCTATACTCAGTTCACGTTCCCTA 17343 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| |||| |||||||||||| || || ||| |||||| Sbjct 17344 TTAGTGGGTGAACAATCCAACACTTAGTGAATTCTGCTTCACAATAGTAAGAATAGCCGA 17403 Query 151 CATCGAAGGATCA 163 ||||||||||||| Sbjct 17404 CATCGAAGGATCA 17416 >seq1752 Length=48526 Score = 122 bits (134), Expect = 1e-25 Identities = 78/85 (92%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||||||||||||||| ||||||| ||| ||||||||||| |||| |||||||| Sbjct 20734 TCATTAGTAGGGTAAAACTAACTTGTCTCACGACAGTCTAAACCCAACTCATGTTCCCTA 20675 Query 91 TTAGTGGGTGAACAATCCAACGCTT 115 |||||| |||||||||||||||||| Sbjct 20674 TTAGTGAGTGAACAATCCAACGCTT 20650 >seq151 Length=112427 Score = 122 bits (134), Expect = 1e-25 Identities = 105/130 (81%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| | || |||| |||||||||||||||| || |||||| |||||||||||||||| | Sbjct 45891 TCATTATTAAGGTAGAACTAACCTGTCTCATTACTGTCTAAGCCCAGCTCACGTTCCCAA 45950 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||| |||||| |||| ||| ||||| ||||| ||||| ||||||||| | Sbjct 45951 TTAGTGAACGAACAAACCAATACTTCGTGAATTTCGCTTCACAATGATCGGAAGAGCCTA 46010 Query 151 CATCGAAGGA 160 ||| |||||| Sbjct 46011 CATTGAAGGA 46020 >seq974 Length=63997 Score = 96.9 bits (106), Expect = 6e-18 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 ||||||||||| ||| | || ||| ||||| | | | || | ||| |||||| || Sbjct 18040 ATCCAACGCTTGTTGAACTATGTTTCACAATGATGGATATAACCAATATCAAAGGATTAA 17981 Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217 ||||| ||||||| |||||||||||| |||||||| |||||| ||||||||| Sbjct 17980 AAAGCGACGTCGCCATGAACGCTTGGAAGCCACAAGTCAGTTACCCCTGTGGT 17928 >seq7649 Length=14954 Score = 86.0 bits (94), Expect = 1e-14 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198 ||||| |||||| |||||||||||||| | | | ||||||||||| |||||||| ||| | Sbjct 2940 AGGAAAAGCCGATATCGAAGGATCAAATAACCATGTCGCTATGAATGCTTGGCTACCATA 2881 Query 199 AGCCAGTTAT 208 |||||||||| Sbjct 2880 AGCCAGTTAT 2871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854200454880