Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq10467 248 1e-63
seq13507 233 3e-59
seq10746 233 3e-59
seq4 181 2e-43
seq4862 159 6e-37
seq1752 122 1e-25
seq151 122 1e-25
seq974 96.9 6e-18
seq7649 86.0 1e-14
>seq10467
Length=9193
Score = 248 bits (274), Expect = 1e-63
Identities = 172/195 (88%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 7336 TCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 7395
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||||||||| ||||||| |||| || |||| || ||||||
Sbjct 7396 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTACTTCACAATCATAGAAACAGCCGA 7455
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|||||||| |||||||| | |||||||||||||| |||||| ||||||||| | |||||
Sbjct 7456 CATCGAAGAATCAAAAACCGACGTCGCTATGAACACTTGGCCGCCACAAGCTATTTATCA 7515
Query 211 CTGTGGTAACTTTTC 225
||||||| | ||||
Sbjct 7516 CTGTGGTGCCCTTTC 7530
>seq13507
Length=5189
Score = 233 bits (258), Expect = 3e-59
Identities = 165/189 (87%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 37 GTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 96
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 3082 GTAGGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCACGTTCCTTATTAGTG 3023
Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156
| ||| ||||||||| ||| ||||||| |||| ||||||| |||||| ||||||||
Sbjct 3022 GATGAGCAATCCAACACTTGGTGAATTCTACTTCACAATGATAGAAAGAGCGGACATCGA 2963
Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216
||||||||||| | |||||||||||||| |||| ||||||||||| ||||||| ||||||
Sbjct 2962 AGGATCAAAAACCGACGTCGCTATGAACACTTGCCTGCCACAAGCTAGTTATCACTGTGG 2903
Query 217 TAACTTTTC 225
| | ||||
Sbjct 2902 TGCCCTTTC 2894
>seq10746
Length=8719
Score = 233 bits (258), Expect = 3e-59
Identities = 165/189 (87%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 37 GTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 96
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1845 GTAGGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 1786
Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156
| ||||||||||||| ||| ||||||| |||| ||||||| |||||| |||||||
Sbjct 1785 GATGAACAATCCAACACTTGGTGAATTCTACTTCACAATGATAGAAAGAGCGAACATCGA 1726
Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216
||||||||||| | |||||||||||||| |||||| ||||||||| | ||||| ||||||
Sbjct 1725 AGGATCAAAAACCGACGTCGCTATGAACACTTGGCCGCCACAAGCTATTTATCACTGTGG 1666
Query 217 TAACTTTTC 225
| | ||||
Sbjct 1665 TGCCCTTTC 1657
>seq4
Length=281048
Score = 181 bits (200), Expect = 2e-43
Identities = 126/143 (88%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 50 AACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCA 109
|||||||||| | ||| |||||| | ||||| ||||| ||||||||||||||||||||
Sbjct 135990 AACCTGTCTCGCGGCGGATTAAACCTAACTCACTTTCCCCATTAGTGGGTGAACAATCCA 135931
Query 110 ACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
|||||| | |||||| ||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 135930 ACGCTTGCTGAATTCCGCTTCACAATGATAGGAAGAGCCGACATCAAAGGATCAAAAAGC 135871
Query 170 AACGTCGCTATGAACGCTTGGCT 192
||||||||||||||||||||||
Sbjct 135870 GACGTCGCTATGAACGCTTGGCT 135848
>seq4862
Length=24419
Score = 159 bits (176), Expect = 6e-37
Identities = 115/133 (86%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| |||| |||||||||||||||||||| | |||||| || ||| ||||||||||||
Sbjct 17284 TCATTAGTAAGGTAAAACTAACCTGTCTCACAATGGTCTATACTCAGTTCACGTTCCCTA 17343
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||||| |||| |||||||||||| || || ||| ||||||
Sbjct 17344 TTAGTGGGTGAACAATCCAACACTTAGTGAATTCTGCTTCACAATAGTAAGAATAGCCGA 17403
Query 151 CATCGAAGGATCA 163
|||||||||||||
Sbjct 17404 CATCGAAGGATCA 17416
>seq1752
Length=48526
Score = 122 bits (134), Expect = 1e-25
Identities = 78/85 (92%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| ||||||||||||||||| ||||||| ||| ||||||||||| |||| ||||||||
Sbjct 20734 TCATTAGTAGGGTAAAACTAACTTGTCTCACGACAGTCTAAACCCAACTCATGTTCCCTA 20675
Query 91 TTAGTGGGTGAACAATCCAACGCTT 115
|||||| ||||||||||||||||||
Sbjct 20674 TTAGTGAGTGAACAATCCAACGCTT 20650
>seq151
Length=112427
Score = 122 bits (134), Expect = 1e-25
Identities = 105/130 (81%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| | || |||| |||||||||||||||| || |||||| |||||||||||||||| |
Sbjct 45891 TCATTATTAAGGTAGAACTAACCTGTCTCATTACTGTCTAAGCCCAGCTCACGTTCCCAA 45950
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||| |||||| |||| ||| ||||| ||||| ||||| ||||||||| |
Sbjct 45951 TTAGTGAACGAACAAACCAATACTTCGTGAATTTCGCTTCACAATGATCGGAAGAGCCTA 46010
Query 151 CATCGAAGGA 160
||| ||||||
Sbjct 46011 CATTGAAGGA 46020
>seq974
Length=63997
Score = 96.9 bits (106), Expect = 6e-18
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164
||||||||||| ||| | || ||| ||||| | | | || | ||| |||||| ||
Sbjct 18040 ATCCAACGCTTGTTGAACTATGTTTCACAATGATGGATATAACCAATATCAAAGGATTAA 17981
Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217
||||| ||||||| |||||||||||| |||||||| |||||| |||||||||
Sbjct 17980 AAAGCGACGTCGCCATGAACGCTTGGAAGCCACAAGTCAGTTACCCCTGTGGT 17928
>seq7649
Length=14954
Score = 86.0 bits (94), Expect = 1e-14
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198
||||| |||||| |||||||||||||| | | | ||||||||||| |||||||| ||| |
Sbjct 2940 AGGAAAAGCCGATATCGAAGGATCAAATAACCATGTCGCTATGAATGCTTGGCTACCATA 2881
Query 199 AGCCAGTTAT 208
||||||||||
Sbjct 2880 AGCCAGTTAT 2871
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854200454880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |