Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= AAMG01001382.1
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
seq16921 95.1 7e-18
seq2921 95.1 7e-18
seq711 95.1 7e-18
seq10665 91.5 9e-17
seq1136 87.8 1e-15
seq1733 86.0 4e-15
seq9275 80.6 2e-13
seq9662 77.0 2e-12
seq5378 77.0 2e-12
seq172 75.2 7e-12
seq1431 71.6 8e-11
>seq16921
Length=2467
Score = 95.1 bits (104), Expect = 7e-18
Identities = 69/76 (91%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 694 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 751
Query 109 TAATACAACGCAAGCT 124
|||| || ||||||||
Sbjct 752 TAAT-CAGCGCAAGCT 766
>seq2921
Length=35972
Score = 95.1 bits (104), Expect = 7e-18
Identities = 69/76 (91%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 20815 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 20758
Query 109 TAATACAACGCAAGCT 124
|||| || ||||||||
Sbjct 20757 TAAT-CAGCGCAAGCT 20743
Score = 95.1 bits (104), Expect = 7e-18
Identities = 69/76 (91%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 21859 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 21802
Query 109 TAATACAACGCAAGCT 124
|||| || ||||||||
Sbjct 21801 TAAT-CAGCGCAAGCT 21787
>seq711
Length=71778
Score = 95.1 bits (104), Expect = 7e-18
Identities = 69/76 (91%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 6074 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 6017
Query 109 TAATACAACGCAAGCT 124
|||| || ||||||||
Sbjct 6016 TAAT-CAGCGCAAGCT 6002
>seq10665
Length=8850
Score = 91.5 bits (100), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| | ||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 7754 CTCACTAAACTATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 7811
Query 109 TAATACAACGCAAGCT 124
|||| || ||||||||
Sbjct 7812 TAAT-CAGCGCAAGCT 7826
>seq1136
Length=60186
Score = 87.8 bits (96), Expect = 1e-15
Identities = 80/96 (83%), Gaps = 5/96 (5%)
Strand=Plus/Minus
Query 29 CAAAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGG 88
|||||||| | | || | |||||||| | ||| || | ||||||| |||||||||||
Sbjct 36252 CAAAGCCACTAC--AACGACCTCACTAAACTATT-CAGTTGGTAGTA-GCGACGGGCGGT 36197
Query 89 GTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124
|||||||||||||||||||||||| || ||||||||
Sbjct 36196 GTGTACAAAGGGCAGGGACGTAAT-CAGCGCAAGCT 36162
>seq1733
Length=48839
Score = 86.0 bits (94), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 28136 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGATA 28079
Query 109 TAATACAACGCAAGCT 124
|||| || ||||||||
Sbjct 28078 TAAT-CAGCGCAAGCT 28064
>seq9275
Length=11409
Score = 80.6 bits (88), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 3/75 (4%)
Strand=Plus/Plus
Query 50 TCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGT 109
||||||| ||||| || ||||||||| | |||||| || |||||||||||||||||| ||
Sbjct 2371 TCACTAAACCATT-CAATCGGTAGTA-GAGACGGGTGGTGTGTACAAAGGGCAGGGATGT 2428
Query 110 AATACAACGCAAGCT 124
||| || ||||||||
Sbjct 2429 AAT-CAGCGCAAGCT 2442
>seq9662
Length=10629
Score = 77.0 bits (84), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||| ||| ||||| || ||||||||| ||||||||||| ||||||||||| | ||||||
Sbjct 2385 CTCAATAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGACTGGGACG 2328
Query 109 TAATACAACGCAAGCT 124
|||| || | ||||||
Sbjct 2327 TAAT-CAGCTCAAGCT 2313
>seq5378
Length=22061
Score = 77.0 bits (84), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| | || ||| ||||||| ||||||||||| ||||||||| ||||||||||
Sbjct 14726 CTCACTAAACTGTTCAATT-GGTAGTA-GCGACGGGCGGTGTGTACAAACGGCAGGGACG 14783
Query 109 TAATACAACGCAAGCT 124
|||| || ||||||||
Sbjct 14784 TAAT-CAGCGCAAGCT 14798
>seq172
Length=109588
Score = 75.2 bits (82), Expect = 7e-12
Identities = 68/82 (83%), Gaps = 3/82 (4%)
Strand=Plus/Minus
Query 43 AAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCA 102
|||| |||||||| ||||| || |||||||| || ||||||| ||||||||||||||
Sbjct 31083 AAAGACCTCACTAAACCATT-CAACCGGTAGTA-GCAACGGGCGCTGTGTACAAAGGGCA 31026
Query 103 GGGACGTAATACAACGCAAGCT 124
||||| |||| || | ||||||
Sbjct 31025 GGGACATAAT-CAGCACAAGCT 31005
>seq1431
Length=53506
Score = 71.6 bits (78), Expect = 8e-11
Identities = 63/75 (84%), Gaps = 3/75 (4%)
Strand=Plus/Plus
Query 50 TCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGT 109
||||||| |||||| || |||||| ||| ||||||||| |||||||||||||| ||||
Sbjct 5380 TCACTAAACCATTTAAT-CGGTAG-AAGTGACGGGCGGTCTGTACAAAGGGCAGCAACGT 5437
Query 110 AATACAACGCAAGCT 124
|| || ||||||||
Sbjct 5438 -ATTCAGCGCAAGCT 5451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300734138900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |