Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq16921 95.1 7e-18 seq2921 95.1 7e-18 seq711 95.1 7e-18 seq10665 91.5 9e-17 seq1136 87.8 1e-15 seq1733 86.0 4e-15 seq9275 80.6 2e-13 seq9662 77.0 2e-12 seq5378 77.0 2e-12 seq172 75.2 7e-12 seq1431 71.6 8e-11 >seq16921 Length=2467 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 694 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 751 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 752 TAAT-CAGCGCAAGCT 766 >seq2921 Length=35972 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 20815 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 20758 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 20757 TAAT-CAGCGCAAGCT 20743 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 21859 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 21802 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 21801 TAAT-CAGCGCAAGCT 21787 >seq711 Length=71778 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 6074 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 6017 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 6016 TAAT-CAGCGCAAGCT 6002 >seq10665 Length=8850 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| | ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 7754 CTCACTAAACTATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 7811 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 7812 TAAT-CAGCGCAAGCT 7826 >seq1136 Length=60186 Score = 87.8 bits (96), Expect = 1e-15 Identities = 80/96 (83%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 29 CAAAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGG 88 |||||||| | | || | |||||||| | ||| || | ||||||| ||||||||||| Sbjct 36252 CAAAGCCACTAC--AACGACCTCACTAAACTATT-CAGTTGGTAGTA-GCGACGGGCGGT 36197 Query 89 GTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||||||||||||| || |||||||| Sbjct 36196 GTGTACAAAGGGCAGGGACGTAAT-CAGCGCAAGCT 36162 >seq1733 Length=48839 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||| Sbjct 28136 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGATA 28079 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 28078 TAAT-CAGCGCAAGCT 28064 >seq9275 Length=11409 Score = 80.6 bits (88), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 50 TCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGT 109 ||||||| ||||| || ||||||||| | |||||| || |||||||||||||||||| || Sbjct 2371 TCACTAAACCATT-CAATCGGTAGTA-GAGACGGGTGGTGTGTACAAAGGGCAGGGATGT 2428 Query 110 AATACAACGCAAGCT 124 ||| || |||||||| Sbjct 2429 AAT-CAGCGCAAGCT 2442 >seq9662 Length=10629 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||| ||| ||||| || ||||||||| ||||||||||| ||||||||||| | |||||| Sbjct 2385 CTCAATAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGACTGGGACG 2328 Query 109 TAATACAACGCAAGCT 124 |||| || | |||||| Sbjct 2327 TAAT-CAGCTCAAGCT 2313 >seq5378 Length=22061 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| | || ||| ||||||| ||||||||||| ||||||||| |||||||||| Sbjct 14726 CTCACTAAACTGTTCAATT-GGTAGTA-GCGACGGGCGGTGTGTACAAACGGCAGGGACG 14783 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 14784 TAAT-CAGCGCAAGCT 14798 >seq172 Length=109588 Score = 75.2 bits (82), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 3/82 (4%) Strand=Plus/Minus Query 43 AAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCA 102 |||| |||||||| ||||| || |||||||| || ||||||| |||||||||||||| Sbjct 31083 AAAGACCTCACTAAACCATT-CAACCGGTAGTA-GCAACGGGCGCTGTGTACAAAGGGCA 31026 Query 103 GGGACGTAATACAACGCAAGCT 124 ||||| |||| || | |||||| Sbjct 31025 GGGACATAAT-CAGCACAAGCT 31005 >seq1431 Length=53506 Score = 71.6 bits (78), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 50 TCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGT 109 ||||||| |||||| || |||||| ||| ||||||||| |||||||||||||| |||| Sbjct 5380 TCACTAAACCATTTAAT-CGGTAG-AAGTGACGGGCGGTCTGTACAAAGGGCAGCAACGT 5437 Query 110 AATACAACGCAAGCT 124 || || |||||||| Sbjct 5438 -ATTCAGCGCAAGCT 5451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300734138900