Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq10665 109 6e-22 seq1136 93.3 4e-17 seq128 75.2 1e-11 >seq10665 Length=8850 Score = 109 bits (120), Expect = 6e-22 Identities = 132/176 (75%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC--GAATACATTACCATG 70 ||||||||||| ||||| ||| | ||||||||||||| ||| | ||| | | |||| Sbjct 8758 TTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTGTGCGCCTGAAAATTCTTGCATG 8699 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| |||||||| | |||||||||||||| ||||| | ||| | |||||| | Sbjct 8698 GAATAATGAAATAGGAC-TTCGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGT 8641 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| || |||||| | |||| ||| | |||||||||||| |||| Sbjct 8640 TAAGAGGGACAGACGGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTGGGAT 8585 >seq1136 Length=60186 Score = 93.3 bits (102), Expect = 4e-17 Identities = 129/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC--GAATACATTACCATG 70 ||||||||||| ||||| ||| | ||||||||||||| ||| | ||| | | |||| Sbjct 35256 TTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTGTGCGCCTGAAAATTCTTGCATG 35315 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| |||||||| | |||||||||||||| ||||| | ||| | |||||| | Sbjct 35316 GAATAATGAAATAGGAC-TTCGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGT 35373 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || | || || |||| | ||| ||| | |||||||||||| ||||| Sbjct 35374 TAAGAGTGACAGACGGGAACATTTGTACGGCGGTGTTAGAGGTGAAATTCTGGGATT 35430 >seq128 Length=118216 Score = 75.2 bits (82), Expect = 1e-11 Identities = 78/100 (78%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTA--CCATG 70 ||||||||||| ||||| ||| | |||| |||| |||||| | | | |||| |||| Sbjct 46332 TTTACTTTGAATAAATTTGAGTGCCCAAAACAGGACTTTGCGCCTAAAAATTATTGCATG 46273 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||||| ||||||| | | |||||||||||| ||||| Sbjct 46272 GAATAATGAGATAGGAC-TTCAGTTCTATTTTGTTGGTTT 46234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511884159200