Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq10665 190 4e-46 seq2921 190 4e-46 seq16921 178 2e-42 seq711 156 8e-36 seq9662 149 1e-33 seq1136 141 2e-31 seq5378 136 7e-30 seq1733 122 2e-25 seq6421 120 6e-25 seq2456 114 2e-23 seq781 114 2e-23 seq9275 84.2 4e-14 seq235 77.0 6e-12 >seq10665 Length=8850 Score = 190 bits (210), Expect = 4e-46 Identities = 202/262 (77%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| | |||| || || || ||| || ||| ||||||||||||| Sbjct 8054 CTTCTTAGAGGGACAAGCGGCACACTTAAGTCGCACGAAATT-GAG-CAATAACAGGTCT 7997 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TC 186 ||||||||||||||||| | ||||| |||| |||||||| |||| | |||| ||||| | Sbjct 7996 GTGATGCCCTTAGATGTCCGGGGCCACACGTGCGCTACAATGACGGTGCCAGCGAGTCTG 7937 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 |||| | ||| |||| |||| || || || | | | |||||| ||||| | | Sbjct 7936 GAAACCTGGCCCGAAAGGGTTGGGCAAACTGTTTCATCACCGTCGTGACTGGGATCGGGG 7877 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 ||||||||||| | | | |||||||||| ||| ||||| || ||||| ||| ||| | Sbjct 7876 CTTGCAATTATTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCT 7817 Query 307 GATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||||| Sbjct 7816 GATTACGTCCCTGCCCTTTGTA 7795 >seq2921 Length=35972 Score = 190 bits (210), Expect = 4e-46 Identities = 202/262 (77%), Gaps = 7/262 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| | |||| || || || ||| || ||| ||||||||||||| Sbjct 21559 CTTCTTAGAGGGACAAGCGGCACACTTAAGTCGCACGAAATT-GAG-CAATAACAGGTCT 21616 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TC 186 ||||||||||||||||| | ||||| |||| |||||||| |||| | |||| ||||| | Sbjct 21617 GTGATGCCCTTAGATGTCCGGGGCCACACGTGCGCTACAATGACGGTGCCAGCGAGTCTG 21676 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 |||| | ||| |||| |||| || || || | | | |||||| ||||| | | Sbjct 21677 GAAACCTGGCCCGAAAGGGTTGGGCAAACTGTTTCATCACCGTCGTGACTGGGATCGGGG 21736 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 ||||||||||| | | | |||||||||| ||| ||||| || ||||| ||| ||| | Sbjct 21737 CTTGCAATTATTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCT 21796 Query 307 GATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||||| Sbjct 21797 GATTACGTCCCTGCCCTTTGTA 21818 Score = 187 bits (206), Expect = 5e-45 Identities = 201/262 (77%), Gaps = 7/262 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||| ||| | |||| || || || ||| || ||| ||||||||||||| Sbjct 20515 CTTCTTAGAGAGACAAGCGGCACACTTAAGTCGCACGAAATT-GAG-CAATAACAGGTCT 20572 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TC 186 ||||||||||||||||| | ||||| |||| |||||||| |||| | |||| ||||| | Sbjct 20573 GTGATGCCCTTAGATGTCCGGGGCCACACGTGCGCTACAATGACGGTGCCAGCGAGTCTG 20632 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 |||| | ||| |||| |||| || || || | | | |||||| ||||| | | Sbjct 20633 GAAACCTGGCCCGAAAGGGTTGGGCAAACTGTTTCATCACCGTCGTGACTGGGATCGGGG 20692 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 ||||||||||| | | | |||||||||| ||| ||||| || ||||| ||| ||| | Sbjct 20693 CTTGCAATTATTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCT 20752 Query 307 GATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||||| Sbjct 20753 GATTACGTCCCTGCCCTTTGTA 20774 >seq16921 Length=2467 Score = 178 bits (196), Expect = 2e-42 Identities = 199/262 (76%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCA----AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| | |||| || || || ||| || ||| ||||||||||||| Sbjct 994 CTTCTTAGAGGGACAAGCGGCACACTTAAGTCGCACGAAATT-GAG-CAATAACAGGTCT 937 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TC 186 ||||||||||||||||| | | ||| |||| |||||||| ||| | |||| ||||| | Sbjct 936 GTGATGCCCTTAGATGTCCGGAGCCACACGTGCGCTACAATGATGGTGCCAGCGAGTCTG 877 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 |||| | ||| |||| || | || || || | | | |||||| ||||| | | Sbjct 876 GAAACCTGGCCCGAAAGGGTTGCGCAAACTGTTTCATCACCGTCGTGACTGGGATCGGGG 817 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 ||||||||||| | | | |||||||||| ||| ||||| || ||||| ||| ||| | Sbjct 816 CTTGCAATTATTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCT 757 Query 307 GATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||||| Sbjct 756 GATTACGTCCCTGCCCTTTGTA 735 >seq711 Length=71778 Score = 156 bits (172), Expect = 8e-36 Identities = 168/217 (77%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||| ||||||||||||| | ||| | |||| |||||||| |||| | Sbjct 5819 GCAATAACAGGTCTGTG-TGCCCTTAGATGTCCGGGGTCACACGTGCGCTACAATGACGG 5877 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAA-GGTCTGGGTAATCTTGTTAAACTCTGTCGT 232 |||| ||||| | | ||||| ||| || ||||| || || || | | | ||||| Sbjct 5878 TGCCAGCGAGTCTGGGAACCTGGCCTGAAAGGGCTGGGCAAACTGTTTTATCACCGTCGT 5937 Query 233 GCTGGGGAT-AGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 | ||||| || || |||| |||| | | | | |||||||||| ||| ||||| || | Sbjct 5938 GACTGGGATCAGGGC-TTGCGATTAATCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAG 5996 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| ||| ||||||||||||||||||||||| Sbjct 5997 TCATAAGCTTGCGCTGATTACGTCCCTGCCCTTTGTA 6033 >seq9662 Length=10629 Score = 149 bits (164), Expect = 1e-33 Identities = 167/221 (76%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| || |||||||||||| |||||||||||||| | ||||| |||| |||||||| | Sbjct 2125 TTGAG-CAGTAACAGGTCTGTTATGCCCTTAGATGTCCAGGGCCACACGTGCGCTACAAT 2183 Query 169 GACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT 227 ||| | |||| ||||| | |||| | ||| ||| |||| || || || | | | Sbjct 2184 GACGGTGCCAGCGAGTCTGGAAACCTGGCCCGAAAGTGTTGGGCAAACTGTTTCATCACC 2243 Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 |||||| ||||| | | ||| ||||||| | | | |||||||||| ||| ||||| | Sbjct 2244 GTCGTGACTGGGATCGGGGCTTGTAATTATTCCCCGTGAACGAGGAATTCCTGGTAAGTG 2303 Query 288 CGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| | | |||||||||||| | |||||||| Sbjct 2304 CAAGTCATAAGCTTGAGCTGATTACGTCCCAGTCCTTTGTA 2344 >seq1136 Length=60186 Score = 141 bits (156), Expect = 2e-31 Identities = 164/221 (74%), Gaps = 14/221 (6%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| |||||||||||||||||||||||||||||| | ||||| || | |||||||| | Sbjct 35986 TTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCCACAAGTGCGCTACAAT 36044 Query 169 GACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT 227 ||| | |||| ||||| | |||| | || |||| |||| || || | | | | Sbjct 36045 GACGGTGCCAGCGAGTCTGGAAACCTGGCTCGAAAGGGTTGGGCAAACTGTATCATCACC 36104 Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 ||||| | ||||||||||| | | | ||||||| || ||||||||| | Sbjct 36105 GTCGT------------GACTTGCAATTATTCCCCGTGAACGAGGGATTCCTAGTAAGTG 36152 Query 288 CGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| ||| ||||||||||||||||||||||| Sbjct 36153 CAAGTCATAAGCTTGCGCTGATTACGTCCCTGCCCTTTGTA 36193 >seq5378 Length=22061 Score = 136 bits (150), Expect = 7e-30 Identities = 149/197 (76%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCAC 191 |||||||||||| | || || |||| |||||||| |||| | |||| ||||| | || Sbjct 14963 GCCCTTAGATGTCCGGGACCACACGTGCGCTACAATGACGGTGCCAGCGAGTCTGGAAAC 14904 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 || | ||| |||| |||| || || || | | | |||||| | ||||| | | |||| Sbjct 14903 CTGGCCCGAAAGGGTTGGGCAAACTGTTTCATCACCGTCGTGATTGGGATCGGGGCTTGC 14844 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 ||||||| | | |||||||||| ||| ||||| || ||||| ||| ||| |||||| Sbjct 14843 AATTATTCCCTGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCTGATTA 14784 Query 312 CGTCCCTGCCCTTTGTA 328 |||||||||| |||||| Sbjct 14783 CGTCCCTGCCGTTTGTA 14767 >seq1733 Length=48839 Score = 122 bits (134), Expect = 2e-25 Identities = 143/192 (74%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCACCTTGG 196 ||||||| | ||||| |||| |||||||| |||| | |||| ||||| | |||| | Sbjct 27904 TAGATGTCCGGGGCCACACGTGCGCTACAATGACGGTGCCAGCGAGTCTGGAAACCTGGC 27963 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| |||| |||| || || || | | | |||||| ||||| | | ||||||||| Sbjct 27964 CCGAAAGGGTTGGGCAAACTGTTTCATCACCGTCGTGACTGGGATCGGGGCTTGCAATTA 28023 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 || | | | |||||||||| ||| || || || ||||| ||| ||| |||||| ||| Sbjct 28024 TTCCCCGTGAACGAGGAATTCCTGGTGAGTGCAAGTCATAAGCTTGCGCTGATTATATCC 28083 Query 317 CTGCCCTTTGTA 328 |||||||||||| Sbjct 28084 CTGCCCTTTGTA 28095 >seq6421 Length=18482 Score = 120 bits (132), Expect = 6e-25 Identities = 159/217 (73%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||| |||||| || | ||||| || |||||||| |||| | Sbjct 2374 GCAATAACAGGTCTGTGATGCTCTTAGACGTCCGGGGCCACATATGCGCTACAATGACGG 2433 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGT-CTGGGTAATCTTGTTAAACTCTGTCGT 232 ||||| |||| | | ||||| |||| | ||| || || || | | | |||| Sbjct 2434 TGCCAATGAGTCTGGAAACCTGGCCCGAAGATGTTGGCCAAACTGTTTCATCACCATCGT 2493 Query 233 G-CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 | ||||| | || ||||||||| | | | |||||||||| ||| || || || | Sbjct 2494 GACTGGGCTCATGGC-CCGCAATTATTCCCCGTGAACGAGGAATTCCTGGTCAGTGCAAG 2552 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| || |||||||||||||| |||||||| Sbjct 2553 TCATAAGCTTGCACTGATTACGTCCCTGTCCTTTGTA 2589 >seq2456 Length=40044 Score = 114 bits (126), Expect = 2e-23 Identities = 186/263 (71%), Gaps = 16/263 (6%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC----TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| | || | | ||| | ||| || | |||||||| ||||| Sbjct 22118 CTTCTTAGAGGGACAAGCGTCATGTTTAAGTGGCACGAAATTGG--GCAATAACGGGTCT 22061 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TC 186 ||||||||||||||||| ||| | |||| |||||||| |||| | |||||||||| | Sbjct 22060 GTGATGCCCTTAGATGTCTGGGGACACACGTGCGCTACAATGACGGTGCCAACGAGTCTG 22001 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT-GCTGGGGATAGAG 245 |||| |||||| |||| |||| || || || | | |||| |||||| Sbjct 22000 GACACC-TGGCCGAAAGGGTTGGGCAAACTGTTTCATCAAGTTCGTAACTGGGG------ 21948 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 ||| ||||| | | | | || |||||| || |||| || |||| ||| ||| Sbjct 21947 -TTTGTAATTAATCCCCGTGAATGAGGAACTACTGGTAAATGCAATTCATAAGCTTGCGC 21889 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 |||||| ||||||||||||| || Sbjct 21888 TGATTATGTCCCTGCCCTTTTTA 21866 >seq781 Length=69496 Score = 114 bits (126), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| |||||||| |||||| ||||| ||| |||| | ||||| |||| |||||||| | Sbjct 63088 TTGAG-CAATAACATGTCTGTCATGCCATTATATGTCCAGGGCCACACGTGCGCTACAAT 63030 Query 169 GACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT 227 ||| | | |||||||| | |||| | ||| |||| |||| || | || | | | Sbjct 63029 GACGGTGTCAACGAGTCTGGGAACCTGGCCCGAAAGGGTTGGGCAAATTGTTTCATCACA 62970 Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 |||||| ||||| | | ||||||||||| | | | ||||| ||| | | ||||| | Sbjct 62969 GTCGTGACTGGGATCGGGACTTGCAATTATTCCCCATGAACGAAAAATTCGTGGTAAGTG 62910 Query 288 CGTGTCATCAGCA-CGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| | || | ||||| ||||||| |||||| || Sbjct 62909 CAAGTCATAAACATTGATCTGATTCCGTCCCTACCCTTTATA 62868 >seq9275 Length=11409 Score = 84.2 bits (92), Expect = 4e-14 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 |||| | || |||| |||| || || || | | | |||||| | || | | || Sbjct 2549 ACCTGGCCCAAAAGGGTTGGGAAAACTGTTTCATCACCGTCGTGACTAGTATCGGGGCTT 2490 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | |||||||||| ||| ||||| || ||||| ||| ||| |||| Sbjct 2489 GCAATTATTTCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCTGAT 2430 Query 310 TACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||| Sbjct 2429 TACATCCCTGCCCTTTGTA 2411 >seq235 Length=100731 Score = 77.0 bits (84), Expect = 6e-12 Identities = 156/224 (70%), Gaps = 7/224 (3%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTG-GGCCGCACGCGCGCTACAC 167 ||||| |||||| | ||| ||||||||||||||||| | | | || |||| |||||||| Sbjct 46225 TTGAG-CAATAAAAAGTCCGTGATGCCCTTAGATGTCCAGTGACCACACGTGCGCTACAA 46283 Query 168 TGACAGAGCCAACGAGTTCATCACCTTGGCCGG--AAGGTCTGGGTAATCTTGTTAAACT 225 |||| |||| ||||| | || || | ||||| | || || || || | | Sbjct 46284 CAACAGTGCCAGTGAGTTTGGAAATCTGACCTGAAAAGGT-TTGGCAAACTGTTTTATCA 46342 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCT-TCAACGAGGAATGCCTAGTAA 284 |||||| ||||| || ||||||||||| |||| | |||||| || || ||| Sbjct 46343 TCGTCGTGACTGGGATCAAGACTTGCAATTATT-CTCTATGAACGAGATATTCCAGATAA 46401 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | || |||| ||| | | ||| | ||||||| ||||||| Sbjct 46402 GTGCAAATCATAAGCTTCAGCTAATTCCATCCCTGCTCTTTGTA 46445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946978781440