Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq9662 325 1e-86
seq16968 304 4e-80
seq5560 168 2e-39
seq322 165 3e-38
seq3462 161 3e-37
seq2293 161 3e-37
seq1529 158 4e-36
seq8857 152 2e-34
seq5888 145 2e-32
seq2749 145 2e-32
seq792 109 2e-21
seq502 93.3 1e-16
seq3322 82.4 2e-13
seq13854 78.8 3e-12
seq6683 78.8 3e-12
>seq9662
Length=10629
Score = 325 bits (360), Expect = 1e-86
Identities = 203/218 (93%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295
|||||||||||| ||||| | ||| ||| ||||||||||||||||||||||||||||
Sbjct 2716 GCTCCCACTTATACTACATCCATCATGTCTACTCACAAAGTCGGACTAGAGTCAAGCTCA 2775
Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355
||||||| ||||||||||||| |||| |||| ||||||||||||||||||||||||||||
Sbjct 2776 ACAGGGTTTTCTTTCCCCGCTAATTCTGCCAGGCCCGTTCCCTTGGCTGTGGTTTCGCTA 2835
Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2836 GATAATAGATAGGGACAATGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 2895
Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 453
||||||||||||| ||||||||||||||||||||||||
Sbjct 2896 GACGAGGCATTTGACTACCTTAAGAGAGTCATAGTTAC 2933
>seq16968
Length=2442
Score = 304 bits (336), Expect = 4e-80
Identities = 222/258 (86%), Gaps = 11/258 (4%)
Strand=Plus/Plus
Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC 234
||| |||| ||| |||||||| |||| || | | |||||||||||| || ||| | | |
Sbjct 1498 CCGTTTCACTGAATAAGTAAAGAAACAATGATAGCAGTGGTATTTCATTTTCGCTGGA-C 1556
Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294
||| ||| | ||| ||| |||||||||||||||||||||||||||
Sbjct 1557 AGCTGG----------ACATCCATCATGTCTCCTCACAAAGTCGGACTAGAGTCAAGCTC 1606
Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1607 AACAGGGTCTTCTTTCCCCGCTAATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 1666
Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 1726
Query 415 TGACGAGGCATTTGGCTA 432
||||||||||||||||||
Sbjct 1727 TGACGAGGCATTTGGCTA 1744
>seq5560
Length=21338
Score = 168 bits (186), Expect = 2e-39
Identities = 101/106 (95%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 431 TACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCAC 490
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21216 TACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCAT 21157
Query 491 TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536
||||||||||||||||||||| |||||||||| |||||| | ||||
Sbjct 21156 TTTGACATTCAGAGCACTGGGGAGAAATCACACTGCGTCGAAATCA 21111
>seq322
Length=92945
Score = 165 bits (182), Expect = 3e-38
Identities = 91/91 (100%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 48762 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 48821
Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAA 531
|||||||||||||||||||||||||||||||
Sbjct 48822 AGAGCACTGGGCAGAAATCACATTGCGTCAA 48852
>seq3462
Length=32090
Score = 161 bits (178), Expect = 3e-37
Identities = 89/89 (100%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10165 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 10224
Query 503 AGCACTGGGCAGAAATCACATTGCGTCAA 531
|||||||||||||||||||||||||||||
Sbjct 10225 AGCACTGGGCAGAAATCACATTGCGTCAA 10253
>seq2293
Length=41738
Score = 161 bits (178), Expect = 3e-37
Identities = 130/157 (83%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308
||||| | ||| ||| |||||||||| |||| |||||||||||||||||| |||||
Sbjct 6384 CTACATCCATCATGTCTCCTCACAAAGTCACACTAAAGTCAAGCTCAACAGGGTTTTCTT 6443
Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368
|| | || |||||||||||||| ||||||||||||||||||||| || ||| | ||
Sbjct 6444 TCTCTACTAATTCCGCCAAGCCCATTCCCTTGGCTGTGGTTTCGC----TATTAGGTTGG 6499
Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405
|||||| ||||||| ||||||||||| |||| |||||
Sbjct 6500 GACAGTAGGAATCTGGTTAATCCATTTATGCACGTCA 6536
>seq1529
Length=52026
Score = 158 bits (174), Expect = 4e-36
Identities = 96/102 (94%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489
||||||||| || |||||||||||||||| ||||||||||||| || ||||||||||||
Sbjct 12778 CTACCTTAATGGACTCATAGTTACTCCCGCTGTTTACCCGCGCTCGGCTGAATTTCTTCA 12719
Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531
||||||||||||||||||||||||||||||||||||||||||
Sbjct 12718 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 12677
>seq8857
Length=12258
Score = 152 bits (168), Expect = 2e-34
Identities = 86/87 (99%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 445 CATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAG 504
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 CATAGTTACTCCCGCCGTTAACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAG 2457
Query 505 CACTGGGCAGAAATCACATTGCGTCAA 531
|||||||||||||||||||||||||||
Sbjct 2458 CACTGGGCAGAAATCACATTGCGTCAA 2484
>seq5888
Length=20222
Score = 145 bits (160), Expect = 2e-32
Identities = 140/183 (77%), Gaps = 20/183 (11%)
Strand=Plus/Plus
Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327
||| | |||||||| |||| ||| | |||||||||||||| | |||| |||| | |||
Sbjct 10837 TCAGAGAGTCGGACCAGAGACAAACCTAACAGGGTCTTCTTCGCTCGCTAATTCTGTCAA 10896
Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387
||||||||||| ||||||||||||| |||| ||||||||||
Sbjct 10897 GCCCGTTCCCT-------------------TAGTAGATAGGGATAGTGATAATCTCGTTA 10937
Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447
||||||| || || ||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 10938 ATCCATTTATATGCATCACTAATTAGATGACGAGGCATTTGGCTACCTTATGATGGTC-T 10996
Query 448 AGT 450
|||
Sbjct 10997 AGT 10999
>seq2749
Length=37378
Score = 145 bits (160), Expect = 2e-32
Identities = 125/155 (81%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 278 GGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCC 337
||||||||||||| || ||||||||||||||| || ||| |||| |||||| |||| |
Sbjct 24561 GGACTAGAGTCAAACTAAACAGGGTCTTCTTTTCCTGCTAATTCTACCAAGCTTGTTCTC 24620
Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397
|| |||||||||| | |||||||||| | | |||| ||| ||| ||||||||||||| ||
Sbjct 24621 TTAGCTGTGGTTTTGTTAGATAGTAGGTGGAGACATTGGAAATTTCGTTAATCCATTTAT 24680
Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
|||||| || | | |||| || |||||| |||
Sbjct 24681 ATGCGTCAATAGTGAAGTGACAAGCCATTTGACTA 24715
>seq792
Length=69236
Score = 109 bits (120), Expect = 2e-21
Identities = 75/85 (88%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 447 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 506
|||||||||||| |||||| || ||| ||||||||||| ||| ||||||||||||||||
Sbjct 48540 TAGTTACTCCCGTTGTTTACTCGTGCTCGGTTGAATTTCATCAATTTGACATTCAGAGCA 48481
Query 507 CTGGGCAGAAATCACATTGCGTCAA 531
|||||| |||||| ||||||||||
Sbjct 48480 ATGGGCATAAATCATATTGCGTCAA 48456
>seq502
Length=80928
Score = 93.3 bits (102), Expect = 1e-16
Identities = 117/161 (73%), Gaps = 11/161 (7%)
Strand=Plus/Minus
Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC------ 228
||| | || ||| |||||||| ||| || | | | |||||||||| ||||||
Sbjct 66219 CCGTTCCACTGAATAAGTAAAGAAAAAATGATAGCAATGGTATTTCATTTGCGCTGGGTT 66160
Query 229 -CGAAACG----GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTA 283
|||| | |||| ||| ||| ||| | ||| ||| | ||||||||||||||
Sbjct 66159 CCGAAGCACCCTGCTCTCACCTATATCACATCCATCATGTCGCCTAACAAAGTCGGACTA 66100
Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324
|||||||| ||||||||||||||||||| || | |||| ||
Sbjct 66099 GAGTCAAGATCAACAGGGTCTTCTTTCCTCGTTAATTCTGC 66059
>seq3322
Length=33023
Score = 82.4 bits (90), Expect = 2e-13
Identities = 48/50 (96%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460
||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 29771 TAGATGACGAGGCATTTGGATACCTTAAGAGAGTCATAGTTACTCCCACC 29722
>seq13854
Length=4830
Score = 78.8 bits (86), Expect = 3e-12
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Minus
Query 491 TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 4231 TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAATCA 4186
>seq6683
Length=17680
Score = 78.8 bits (86), Expect = 3e-12
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Minus
Query 491 TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 3412 TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAATCA 3367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634818099040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |