Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq9662 325 1e-86 seq16968 304 4e-80 seq5560 168 2e-39 seq322 165 3e-38 seq3462 161 3e-37 seq2293 161 3e-37 seq1529 158 4e-36 seq8857 152 2e-34 seq5888 145 2e-32 seq2749 145 2e-32 seq792 109 2e-21 seq502 93.3 1e-16 seq3322 82.4 2e-13 seq13854 78.8 3e-12 seq6683 78.8 3e-12 >seq9662 Length=10629 Score = 325 bits (360), Expect = 1e-86 Identities = 203/218 (93%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||||||||| ||||| | ||| ||| |||||||||||||||||||||||||||| Sbjct 2716 GCTCCCACTTATACTACATCCATCATGTCTACTCACAAAGTCGGACTAGAGTCAAGCTCA 2775 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||||| Sbjct 2776 ACAGGGTTTTCTTTCCCCGCTAATTCTGCCAGGCCCGTTCCCTTGGCTGTGGTTTCGCTA 2835 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2836 GATAATAGATAGGGACAATGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 2895 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 453 ||||||||||||| |||||||||||||||||||||||| Sbjct 2896 GACGAGGCATTTGACTACCTTAAGAGAGTCATAGTTAC 2933 >seq16968 Length=2442 Score = 304 bits (336), Expect = 4e-80 Identities = 222/258 (86%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC 234 ||| |||| ||| |||||||| |||| || | | |||||||||||| || ||| | | | Sbjct 1498 CCGTTTCACTGAATAAGTAAAGAAACAATGATAGCAGTGGTATTTCATTTTCGCTGGA-C 1556 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||| ||| | ||| ||| ||||||||||||||||||||||||||| Sbjct 1557 AGCTGG----------ACATCCATCATGTCTCCTCACAAAGTCGGACTAGAGTCAAGCTC 1606 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 1607 AACAGGGTCTTCTTTCCCCGCTAATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 1666 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1667 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 1726 Query 415 TGACGAGGCATTTGGCTA 432 |||||||||||||||||| Sbjct 1727 TGACGAGGCATTTGGCTA 1744 >seq5560 Length=21338 Score = 168 bits (186), Expect = 2e-39 Identities = 101/106 (95%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 431 TACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCAC 490 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21216 TACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCAT 21157 Query 491 TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||||||||||||||||| |||||||||| |||||| | |||| Sbjct 21156 TTTGACATTCAGAGCACTGGGGAGAAATCACACTGCGTCGAAATCA 21111 >seq322 Length=92945 Score = 165 bits (182), Expect = 3e-38 Identities = 91/91 (100%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48762 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 48821 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||||||||||||| Sbjct 48822 AGAGCACTGGGCAGAAATCACATTGCGTCAA 48852 >seq3462 Length=32090 Score = 161 bits (178), Expect = 3e-37 Identities = 89/89 (100%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10165 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 10224 Query 503 AGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||||||||||| Sbjct 10225 AGCACTGGGCAGAAATCACATTGCGTCAA 10253 >seq2293 Length=41738 Score = 161 bits (178), Expect = 3e-37 Identities = 130/157 (83%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308 ||||| | ||| ||| |||||||||| |||| |||||||||||||||||| ||||| Sbjct 6384 CTACATCCATCATGTCTCCTCACAAAGTCACACTAAAGTCAAGCTCAACAGGGTTTTCTT 6443 Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368 || | || |||||||||||||| ||||||||||||||||||||| || ||| | || Sbjct 6444 TCTCTACTAATTCCGCCAAGCCCATTCCCTTGGCTGTGGTTTCGC----TATTAGGTTGG 6499 Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 |||||| ||||||| ||||||||||| |||| ||||| Sbjct 6500 GACAGTAGGAATCTGGTTAATCCATTTATGCACGTCA 6536 >seq1529 Length=52026 Score = 158 bits (174), Expect = 4e-36 Identities = 96/102 (94%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 ||||||||| || |||||||||||||||| ||||||||||||| || |||||||||||| Sbjct 12778 CTACCTTAATGGACTCATAGTTACTCCCGCTGTTTACCCGCGCTCGGCTGAATTTCTTCA 12719 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||||||||||||||||||||||||||||||||||| Sbjct 12718 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 12677 >seq8857 Length=12258 Score = 152 bits (168), Expect = 2e-34 Identities = 86/87 (99%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 445 CATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAG 504 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2398 CATAGTTACTCCCGCCGTTAACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAG 2457 Query 505 CACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||||||||| Sbjct 2458 CACTGGGCAGAAATCACATTGCGTCAA 2484 >seq5888 Length=20222 Score = 145 bits (160), Expect = 2e-32 Identities = 140/183 (77%), Gaps = 20/183 (11%) Strand=Plus/Plus Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327 ||| | |||||||| |||| ||| | |||||||||||||| | |||| |||| | ||| Sbjct 10837 TCAGAGAGTCGGACCAGAGACAAACCTAACAGGGTCTTCTTCGCTCGCTAATTCTGTCAA 10896 Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387 ||||||||||| ||||||||||||| |||| |||||||||| Sbjct 10897 GCCCGTTCCCT-------------------TAGTAGATAGGGATAGTGATAATCTCGTTA 10937 Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447 ||||||| || || ||||||||||||||||||||||||||||||||||| || ||| | Sbjct 10938 ATCCATTTATATGCATCACTAATTAGATGACGAGGCATTTGGCTACCTTATGATGGTC-T 10996 Query 448 AGT 450 ||| Sbjct 10997 AGT 10999 >seq2749 Length=37378 Score = 145 bits (160), Expect = 2e-32 Identities = 125/155 (81%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 278 GGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCC 337 ||||||||||||| || ||||||||||||||| || ||| |||| |||||| |||| | Sbjct 24561 GGACTAGAGTCAAACTAAACAGGGTCTTCTTTTCCTGCTAATTCTACCAAGCTTGTTCTC 24620 Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 || |||||||||| | |||||||||| | | |||| ||| ||| ||||||||||||| || Sbjct 24621 TTAGCTGTGGTTTTGTTAGATAGTAGGTGGAGACATTGGAAATTTCGTTAATCCATTTAT 24680 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||| || | | |||| || |||||| ||| Sbjct 24681 ATGCGTCAATAGTGAAGTGACAAGCCATTTGACTA 24715 >seq792 Length=69236 Score = 109 bits (120), Expect = 2e-21 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 447 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 506 |||||||||||| |||||| || ||| ||||||||||| ||| |||||||||||||||| Sbjct 48540 TAGTTACTCCCGTTGTTTACTCGTGCTCGGTTGAATTTCATCAATTTGACATTCAGAGCA 48481 Query 507 CTGGGCAGAAATCACATTGCGTCAA 531 |||||| |||||| |||||||||| Sbjct 48480 ATGGGCATAAATCATATTGCGTCAA 48456 >seq502 Length=80928 Score = 93.3 bits (102), Expect = 1e-16 Identities = 117/161 (73%), Gaps = 11/161 (7%) Strand=Plus/Minus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC------ 228 ||| | || ||| |||||||| ||| || | | | |||||||||| |||||| Sbjct 66219 CCGTTCCACTGAATAAGTAAAGAAAAAATGATAGCAATGGTATTTCATTTGCGCTGGGTT 66160 Query 229 -CGAAACG----GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTA 283 |||| | |||| ||| ||| ||| | ||| ||| | |||||||||||||| Sbjct 66159 CCGAAGCACCCTGCTCTCACCTATATCACATCCATCATGTCGCCTAACAAAGTCGGACTA 66100 Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324 |||||||| ||||||||||||||||||| || | |||| || Sbjct 66099 GAGTCAAGATCAACAGGGTCTTCTTTCCTCGTTAATTCTGC 66059 >seq3322 Length=33023 Score = 82.4 bits (90), Expect = 2e-13 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 ||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 29771 TAGATGACGAGGCATTTGGATACCTTAAGAGAGTCATAGTTACTCCCACC 29722 >seq13854 Length=4830 Score = 78.8 bits (86), Expect = 3e-12 Identities = 45/46 (98%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 491 TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 4231 TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAATCA 4186 >seq6683 Length=17680 Score = 78.8 bits (86), Expect = 3e-12 Identities = 45/46 (98%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 491 TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 3412 TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAATCA 3367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634818099040