Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4686 217 4e-54 seq716 197 4e-48 seq5066 167 7e-39 seq826 159 1e-36 seq1136 154 4e-35 seq2881 122 3e-25 seq7361 104 7e-20 seq3284 98.7 3e-18 seq128 84.2 7e-14 seq11174 77.0 1e-11 seq2777 77.0 1e-11 >seq4686 Length=25276 Score = 217 bits (240), Expect = 4e-54 Identities = 157/180 (87%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||| |||||| || | ||| ||| || ||||| |||| | | ||||||||| Sbjct 9659 GTACTCATTCAAATTACGGAGCCTCAATTGAGTCCCGTATCCGTATATTTCGTCACTACC 9600 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| |||||||||| ||||||||||||| |||||||||||||||||| | Sbjct 9599 TCCCCGTGCCGGGAATGGGTAATTTTCGCGCCTGCTGCCGTCCTTGGATGTGGTAGCCAT 9540 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| Sbjct 9539 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTATCATCATGGT 9480 >seq716 Length=71623 Score = 197 bits (218), Expect = 4e-48 Identities = 280/387 (72%), Gaps = 34/387 (9%) Strand=Plus/Minus Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || |||||| ||||| ||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 7901 TTAGATGTGTTAGCCATTTATCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTA 7842 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 | |||| |||||||||| | | | || || | || ||| |||| |||| ||||| Sbjct 7841 CACGTTATCGTCATGGTAGGCAAATCACATATCAAC--AAATTGGTAGGACAGACATTTG 7784 Query 223 AATGAACCATCGCCGGCTCAAGGCC--ATGCGATTCGTTAAGTTATTATGAATCACCAAG 280 || || |||||||| | ||||||| ||||| || ||||||| || ||| || Sbjct 7783 AAAGATCCATCGCCAACCCAAGGCCGACTGCGACCGGTAAAGTTATCCAGAGTCATCACA 7724 Query 281 GA---------GCCC---CGAAGG-----GCGTTGGTTTTTTATCTAATAAATACA---- 319 || || | |||||| || | | || | |||||||||| || Sbjct 7723 GAATGTAACAGGCACAGTCGAAGGCTCACCCGATTGGTTCTGCTCTAATAAATGCACCTG 7664 Query 320 -CCCCTTCCGAAGTCGGGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCC 377 |||||| || |||| ||| || | |||||||||| ||||||||||| || ||||| | Sbjct 7663 TCCCCTTGCG-AGTCAGGGATTCAAGGCATGTATTAATTCTAGAATTACTACAGTTATGC 7605 Query 378 ATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 ||||| | ||| ||| || ||| ||| ||||||||||||||||||||| |||| || Sbjct 7604 GTGTAG-CATTTACGATCTAAGGAACAATAGCTGATTTAATGAGCCATTCGCGGTTTAAC 7546 Query 438 TGTAT--AGATTGCTTATACTTAGACA 462 ||| | |||| | |||||||||| Sbjct 7545 TGTTTTAAGAT---ATGTACTTAGACA 7522 Score = 75.2 bits (82), Expect = 3e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||| |||| ||| ||||||||| | || ||||||||||||| ||||||||||| Sbjct 33677 TTGGATGTGTAAGCCATTTATCAGGCTCCTTATCTGGAATCGAACCCTGATTCCCCGTTA 33736 Query 163 CCCGTT 168 || || Sbjct 33737 GCCATT 33742 >seq5066 Length=23407 Score = 167 bits (184), Expect = 7e-39 Identities = 135/161 (84%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 |||||||| |||||||||||||| || ||||||||||||| | ||| | | || ||| Sbjct 21208 GCATGTATAAGCTCTAGAATTACTACAGTTATCCATGTAGCATT-TACGAACTAAGGAAC 21150 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463 ||| ||||||||||||||||||||| ||||||| || | | | | ||||||||||| Sbjct 21149 CATAGCTGATTTAATGAGCCATTCGCCGTTTCACCGTTTTAAG-GTATGTACTTAGACAT 21091 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||| | |||||||||||||||||||||||| Sbjct 21090 GCATGGCTTAATCTCTCAGACAAGCATATGACTACTGGCAG 21050 >seq826 Length=68267 Score = 159 bits (176), Expect = 1e-36 Identities = 119/138 (86%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||| |||||| || | ||| ||| || ||||| |||||| ||||||||||| Sbjct 64071 GTACTCATTCGAATTACGGAGCCTCAATTGAGTCCCGTATCCGTATTTTTTGTCACTACC 64130 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| |||||| ||| ||| |||||| || |||||||||||||||||| | Sbjct 64131 TCCCCGTGCCGGGAGTGGGTAGTTTTCGCACCTGCTTCCGTCCTTGGATGTGGTAGCCAT 64190 Query 120 TTCTCAGGCTCCCTCTCC 137 |||||||||||||||||| Sbjct 64191 TTCTCAGGCTCCCTCTCC 64208 >seq1136 Length=60186 Score = 154 bits (170), Expect = 4e-35 Identities = 113/130 (87%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||| |||||| || | ||| ||| || ||||| |||||| | ||||||||| Sbjct 34939 GTACTCATTCGAATTACGGAGCCTCAATTGAGTCCCGTATCCGTATTTTTCGTCACTACC 34880 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| |||||||||| ||||||||||||| |||||||||||||||||| | Sbjct 34879 TCCCCGTGCCGGGAGTGGGTAATTTTCGCGCCTGCTGCCGTCCTTGGATGTGGTAGCCAT 34820 Query 120 TTCTCAGGCT 129 |||||||||| Sbjct 34819 TTCTCAGGCT 34810 >seq2881 Length=36258 Score = 122 bits (134), Expect = 3e-25 Identities = 87/99 (88%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465 || ||||||||||||||||||||| ||||||| || | | | | ||||||||||||| Sbjct 30873 TAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTTTTAAG-GTATGTACTTAGACATGC 30931 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||| |||||||||||||||||||||||||| Sbjct 30932 ATGGCTTAATCTCTGAGACAAGCATATGACTACTGGCAG 30970 >seq7361 Length=15651 Score = 104 bits (114), Expect = 7e-20 Identities = 109/140 (78%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 347 TGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGAT 406 ||||||||||||| |||| | | |||| |||||||| | ||| ||| || |||| || Sbjct 10173 TGTATTAGCTCTAAAATTCCTA--GTTACCCATGTAGCATT-TACGATCTAAGAAACCAT 10229 Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 | |||||||| |||||||||||| ||||||| || | | | | |||||||| ||| | Sbjct 10230 ATCTGATTTAGTGAGCCATTCGCGGTTTCACCGT-TTTAAGGTATGTACTTAGATATGTA 10288 Query 467 TGGCTTAATCTTTGAGACAA 486 |||||||| || ||| |||| Sbjct 10289 TGGCTTAACCTCTGATACAA 10308 >seq3284 Length=33240 Score = 98.7 bits (108), Expect = 3e-18 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAA 408 ||| ||| |||||| ||| | ||||||||||||| ||| ||| || ||| || Sbjct 7739 TATAAGCACTAGAAGTACTATAGTTATCCATGTAGCGTT-TACGATCCAAGTAACTATCT 7797 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||||| ||||||| | ||||| |||| || || | | | | ||||||||||| || Sbjct 7798 CTGATATAATGAGTCCTTCGCGGTTTTACCGTTTTAAG-GTATGTACTTAGACATATATA 7856 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||| |||||||||| ||||||| ||| Sbjct 7857 GCTTAATCTCTGATACAAGCATATTACTACTGACAG 7892 >seq128 Length=118216 Score = 84.2 bits (92), Expect = 7e-14 Identities = 85/110 (77%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 137 CGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCA 196 |||||||||||||| ||||| ||||||||||| | | |||| || | | |||||| Sbjct 46507 CGGAATCGAACCCTGATTCCTCGTTACCCGTTATCATCTTGGTGGGGAAATCAACTACCA 46566 Query 197 TCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGC 246 | ||| |||||||||||| ||||||| || |||| ||| | |||||| Sbjct 46567 ACAAAA--TGATAGGGCAGACATTTGAAAGATCCATTACCGACCCAAGGC 46614 >seq11174 Length=8061 Score = 77.0 bits (84), Expect = 1e-11 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||| |||||||||||||||||||| ||||||||||| || Sbjct 5254 TATTTAGACATGCATGACTTAATCTTTGAGACAAGCACATGACTACTGGAAG 5203 >seq2777 Length=37165 Score = 77.0 bits (84), Expect = 1e-11 Identities = 50/55 (91%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCC 157 || |||||||||||| |||||||||||| |||||||||||||||||| |||||| Sbjct 24951 TTAGATGTGGTAGCCATTTCTCAGGCTCTCTCTCCGGAATCGAACCCAGATTCCC 25005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510047246080