Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq4686 217 4e-54
seq716 197 4e-48
seq5066 167 7e-39
seq826 159 1e-36
seq1136 154 4e-35
seq2881 122 3e-25
seq7361 104 7e-20
seq3284 98.7 3e-18
seq128 84.2 7e-14
seq11174 77.0 1e-11
seq2777 77.0 1e-11
>seq4686
Length=25276
Score = 217 bits (240), Expect = 4e-54
Identities = 157/180 (87%), Gaps = 1/180 (1%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
|||||||||| |||||| || | ||| ||| || ||||| |||| | | |||||||||
Sbjct 9659 GTACTCATTCAAATTACGGAGCCTCAATTGAGTCCCGTATCCGTATATTTCGTCACTACC 9600
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
|||||||| ||||| |||||||||| ||||||||||||| |||||||||||||||||| |
Sbjct 9599 TCCCCGTGCCGGGAATGGGTAATTTTCGCGCCTGCTGCCGTCCTTGGATGTGGTAGCCAT 9540
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179
||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 9539 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTATCATCATGGT 9480
>seq716
Length=71623
Score = 197 bits (218), Expect = 4e-48
Identities = 280/387 (72%), Gaps = 34/387 (9%)
Strand=Plus/Minus
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
|| |||||| ||||| ||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 7901 TTAGATGTGTTAGCCATTTATCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTA 7842
Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222
| |||| |||||||||| | | | || || | || ||| |||| |||| |||||
Sbjct 7841 CACGTTATCGTCATGGTAGGCAAATCACATATCAAC--AAATTGGTAGGACAGACATTTG 7784
Query 223 AATGAACCATCGCCGGCTCAAGGCC--ATGCGATTCGTTAAGTTATTATGAATCACCAAG 280
|| || |||||||| | ||||||| ||||| || ||||||| || ||| ||
Sbjct 7783 AAAGATCCATCGCCAACCCAAGGCCGACTGCGACCGGTAAAGTTATCCAGAGTCATCACA 7724
Query 281 GA---------GCCC---CGAAGG-----GCGTTGGTTTTTTATCTAATAAATACA---- 319
|| || | |||||| || | | || | |||||||||| ||
Sbjct 7723 GAATGTAACAGGCACAGTCGAAGGCTCACCCGATTGGTTCTGCTCTAATAAATGCACCTG 7664
Query 320 -CCCCTTCCGAAGTCGGGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCC 377
|||||| || |||| ||| || | |||||||||| ||||||||||| || ||||| |
Sbjct 7663 TCCCCTTGCG-AGTCAGGGATTCAAGGCATGTATTAATTCTAGAATTACTACAGTTATGC 7605
Query 378 ATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437
||||| | ||| ||| || ||| ||| ||||||||||||||||||||| |||| ||
Sbjct 7604 GTGTAG-CATTTACGATCTAAGGAACAATAGCTGATTTAATGAGCCATTCGCGGTTTAAC 7546
Query 438 TGTAT--AGATTGCTTATACTTAGACA 462
||| | |||| | ||||||||||
Sbjct 7545 TGTTTTAAGAT---ATGTACTTAGACA 7522
Score = 75.2 bits (82), Expect = 3e-11
Identities = 56/66 (85%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
||||||||| |||| ||| ||||||||| | || ||||||||||||| |||||||||||
Sbjct 33677 TTGGATGTGTAAGCCATTTATCAGGCTCCTTATCTGGAATCGAACCCTGATTCCCCGTTA 33736
Query 163 CCCGTT 168
|| ||
Sbjct 33737 GCCATT 33742
>seq5066
Length=23407
Score = 167 bits (184), Expect = 7e-39
Identities = 135/161 (84%), Gaps = 2/161 (1%)
Strand=Plus/Minus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403
|||||||| |||||||||||||| || ||||||||||||| | ||| | | || |||
Sbjct 21208 GCATGTATAAGCTCTAGAATTACTACAGTTATCCATGTAGCATT-TACGAACTAAGGAAC 21150
Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463
||| ||||||||||||||||||||| ||||||| || | | | | |||||||||||
Sbjct 21149 CATAGCTGATTTAATGAGCCATTCGCCGTTTCACCGTTTTAAG-GTATGTACTTAGACAT 21091
Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||| | ||||||||||||||||||||||||
Sbjct 21090 GCATGGCTTAATCTCTCAGACAAGCATATGACTACTGGCAG 21050
>seq826
Length=68267
Score = 159 bits (176), Expect = 1e-36
Identities = 119/138 (86%), Gaps = 1/138 (1%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
|||||||||| |||||| || | ||| ||| || ||||| |||||| |||||||||||
Sbjct 64071 GTACTCATTCGAATTACGGAGCCTCAATTGAGTCCCGTATCCGTATTTTTTGTCACTACC 64130
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
|||||||| ||||| |||||| ||| ||| |||||| || |||||||||||||||||| |
Sbjct 64131 TCCCCGTGCCGGGAGTGGGTAGTTTTCGCACCTGCTTCCGTCCTTGGATGTGGTAGCCAT 64190
Query 120 TTCTCAGGCTCCCTCTCC 137
||||||||||||||||||
Sbjct 64191 TTCTCAGGCTCCCTCTCC 64208
>seq1136
Length=60186
Score = 154 bits (170), Expect = 4e-35
Identities = 113/130 (87%), Gaps = 1/130 (1%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
|||||||||| |||||| || | ||| ||| || ||||| |||||| | |||||||||
Sbjct 34939 GTACTCATTCGAATTACGGAGCCTCAATTGAGTCCCGTATCCGTATTTTTCGTCACTACC 34880
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
|||||||| ||||| |||||||||| ||||||||||||| |||||||||||||||||| |
Sbjct 34879 TCCCCGTGCCGGGAGTGGGTAATTTTCGCGCCTGCTGCCGTCCTTGGATGTGGTAGCCAT 34820
Query 120 TTCTCAGGCT 129
||||||||||
Sbjct 34819 TTCTCAGGCT 34810
>seq2881
Length=36258
Score = 122 bits (134), Expect = 3e-25
Identities = 87/99 (88%), Gaps = 1/99 (1%)
Strand=Plus/Plus
Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465
|| ||||||||||||||||||||| ||||||| || | | | | |||||||||||||
Sbjct 30873 TAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTTTTAAG-GTATGTACTTAGACATGC 30931
Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||| ||||||||||||||||||||||||||
Sbjct 30932 ATGGCTTAATCTCTGAGACAAGCATATGACTACTGGCAG 30970
>seq7361
Length=15651
Score = 104 bits (114), Expect = 7e-20
Identities = 109/140 (78%), Gaps = 4/140 (3%)
Strand=Plus/Plus
Query 347 TGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGAT 406
||||||||||||| |||| | | |||| |||||||| | ||| ||| || |||| ||
Sbjct 10173 TGTATTAGCTCTAAAATTCCTA--GTTACCCATGTAGCATT-TACGATCTAAGAAACCAT 10229
Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466
| |||||||| |||||||||||| ||||||| || | | | | |||||||| ||| |
Sbjct 10230 ATCTGATTTAGTGAGCCATTCGCGGTTTCACCGT-TTTAAGGTATGTACTTAGATATGTA 10288
Query 467 TGGCTTAATCTTTGAGACAA 486
|||||||| || ||| ||||
Sbjct 10289 TGGCTTAACCTCTGATACAA 10308
>seq3284
Length=33240
Score = 98.7 bits (108), Expect = 3e-18
Identities = 117/156 (75%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAA 408
||| ||| |||||| ||| | ||||||||||||| ||| ||| || ||| ||
Sbjct 7739 TATAAGCACTAGAAGTACTATAGTTATCCATGTAGCGTT-TACGATCCAAGTAACTATCT 7797
Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468
||||| ||||||| | ||||| |||| || || | | | | ||||||||||| ||
Sbjct 7798 CTGATATAATGAGTCCTTCGCGGTTTTACCGTTTTAAG-GTATGTACTTAGACATATATA 7856
Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||| ||| |||||||||| ||||||| |||
Sbjct 7857 GCTTAATCTCTGATACAAGCATATTACTACTGACAG 7892
>seq128
Length=118216
Score = 84.2 bits (92), Expect = 7e-14
Identities = 85/110 (77%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 137 CGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCA 196
|||||||||||||| ||||| ||||||||||| | | |||| || | | ||||||
Sbjct 46507 CGGAATCGAACCCTGATTCCTCGTTACCCGTTATCATCTTGGTGGGGAAATCAACTACCA 46566
Query 197 TCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGC 246
| ||| |||||||||||| ||||||| || |||| ||| | ||||||
Sbjct 46567 ACAAAA--TGATAGGGCAGACATTTGAAAGATCCATTACCGACCCAAGGC 46614
>seq11174
Length=8061
Score = 77.0 bits (84), Expect = 1e-11
Identities = 48/52 (92%), Gaps = 0/52 (0%)
Strand=Plus/Minus
Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|| ||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 5254 TATTTAGACATGCATGACTTAATCTTTGAGACAAGCACATGACTACTGGAAG 5203
>seq2777
Length=37165
Score = 77.0 bits (84), Expect = 1e-11
Identities = 50/55 (91%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCC 157
|| |||||||||||| |||||||||||| |||||||||||||||||| ||||||
Sbjct 24951 TTAGATGTGGTAGCCATTTCTCAGGCTCTCTCTCCGGAATCGAACCCAGATTCCC 25005
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510047246080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |